Wall clock time and date at job start Tue Mar 31 2020 12:13:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86802 * 119.99916 * 2 1 4 4 H 1.48497 * 109.47017 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46975 * 299.99853 * 3 2 1 6 6 H 1.48502 * 109.46792 * 59.99891 * 3 2 1 7 7 C 1.37877 * 120.00182 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00121 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99915 * 0.02562 * 7 2 1 10 10 C 1.53034 * 109.45749 * 180.02562 * 9 7 2 11 11 C 1.53195 * 109.30987 * 181.37051 * 10 9 7 12 12 N 1.46920 * 108.89195 * 305.29089 * 11 10 9 13 13 C 1.34777 * 120.62966 * 233.67449 * 12 11 10 14 14 O 1.21583 * 120.00198 * 174.77556 * 13 12 11 15 15 N 1.34781 * 120.00020 * 354.77097 * 13 12 11 16 16 C 1.46501 * 120.00112 * 184.98394 * 15 13 12 17 17 C 1.50694 * 109.46984 * 180.02562 * 16 15 13 18 18 N 1.31137 * 126.55033 * 89.71181 * 17 16 15 19 19 C 1.34494 * 105.61288 * 179.91391 * 18 17 16 20 20 C 1.50698 * 126.28780 * 180.12662 * 19 18 17 21 21 C 1.52998 * 117.50035 * 188.90980 * 20 19 18 22 22 C 1.52997 * 60.00176 * 252.50963 * 21 20 19 23 23 N 1.29948 * 107.42461 * 0.35049 * 19 18 17 24 24 O 1.21294 * 110.25346 * 359.77912 * 23 19 18 25 25 C 1.47201 * 118.55840 * 53.54059 * 12 11 10 26 26 C 1.53041 * 109.44503 * 300.05963 * 9 7 2 27 27 H 0.96997 * 120.00090 * 0.02562 * 1 2 3 28 28 H 1.08993 * 109.45712 * 60.02524 * 9 7 2 29 29 H 1.08998 * 109.50639 * 61.41570 * 10 9 7 30 30 H 1.09008 * 109.52381 * 301.33323 * 10 9 7 31 31 H 1.09008 * 109.58625 * 65.14919 * 11 10 9 32 32 H 1.09004 * 109.58299 * 185.42928 * 11 10 9 33 33 H 0.96996 * 119.99952 * 4.98544 * 15 13 12 34 34 H 1.09007 * 109.46767 * 300.00070 * 16 15 13 35 35 H 1.09002 * 109.47181 * 59.99860 * 16 15 13 36 36 H 1.08997 * 115.55014 * 334.62376 * 20 19 18 37 37 H 1.08998 * 117.49941 * 0.02562 * 21 20 19 38 38 H 1.09004 * 117.49591 * 145.01908 * 21 20 19 39 39 H 1.08996 * 117.50344 * 252.50777 * 22 21 20 40 40 H 1.09004 * 117.51404 * 107.48031 * 22 21 20 41 41 H 1.09000 * 109.53945 * 186.66968 * 25 12 11 42 42 H 1.09004 * 109.67937 * 66.36696 * 25 12 11 43 43 H 1.08997 * 109.50104 * 298.57584 * 26 9 7 44 44 H 1.09006 * 109.49750 * 58.67472 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2459 -3.6621 0.0018 11 6 1.4768 -4.9866 -0.0328 12 7 0.5221 -5.0117 1.0837 13 6 0.5134 -6.0383 1.9568 14 8 -0.2151 -6.0030 2.9296 15 7 1.3122 -7.1044 1.7515 16 6 1.2244 -8.2671 2.6385 17 6 2.2162 -9.3120 2.1965 18 7 3.4609 -9.4248 2.5935 19 6 3.9537 -10.4926 1.9408 20 6 5.3524 -11.0413 2.0566 21 6 5.7658 -12.1358 1.0707 22 6 5.5073 -12.4854 2.5376 23 7 3.0035 -10.9614 1.1885 24 8 1.9970 -10.2974 1.3206 25 6 -0.4209 -3.8907 1.2285 26 6 0.3699 -2.5787 1.2492 27 1 -0.4850 0.8400 -0.0004 28 1 0.6252 -2.5571 -0.8899 29 1 2.8553 -3.6188 0.9045 30 1 2.8893 -3.5921 -0.8753 31 1 0.9378 -5.0717 -0.9764 32 1 2.1756 -5.8175 0.0651 33 1 1.9452 -7.1017 1.0166 34 1 1.4496 -7.9622 3.6605 35 1 0.2169 -8.6810 2.5964 36 1 6.1147 -10.3246 2.3622 37 1 5.0262 -12.4588 0.3381 38 1 6.8003 -12.1392 0.7273 39 1 6.3716 -12.7189 3.1593 40 1 4.5974 -13.0386 2.7706 41 1 -0.9746 -3.9983 2.1612 42 1 -1.1164 -3.8853 0.3893 43 1 0.9972 -2.5456 2.1400 44 1 -0.3227 -1.7370 1.2600 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000781800731.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:24 Heat of formation + Delta-G solvation = 52.793419 kcal Electronic energy + Delta-G solvation = -26424.282017 eV Core-core repulsion = 22573.373858 eV Total energy + Delta-G solvation = -3850.908159 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -46.82469 -41.42340 -38.72953 -38.65163 -36.95753 -35.94201 -35.34892 -33.44671 -32.73811 -31.68412 -28.89705 -27.63436 -26.43260 -24.83983 -24.40129 -23.76670 -23.37389 -21.85954 -21.65553 -20.54162 -19.42916 -19.26828 -18.68981 -18.31176 -17.38940 -16.76186 -16.68621 -16.57571 -16.22200 -15.56700 -15.33109 -15.01994 -14.93562 -14.71634 -14.48798 -14.09013 -13.93757 -13.51692 -13.43926 -13.40352 -13.15374 -12.98184 -12.82420 -12.52933 -12.43611 -12.30598 -12.15997 -12.03807 -11.89952 -11.56772 -11.43553 -11.37640 -10.94779 -10.81475 -10.77314 -10.41138 -10.38830 -9.43922 -8.06350 -6.19651 -0.21125 0.87449 1.40563 1.40900 1.43910 1.53444 1.80704 2.07278 2.33213 2.44833 2.69165 2.85990 2.97741 3.20438 3.55451 3.74562 3.92548 4.02697 4.04356 4.25432 4.30932 4.33639 4.40398 4.50973 4.54760 4.60035 4.66558 4.74094 4.74823 4.89913 4.90947 4.99707 5.00837 5.12806 5.16884 5.20162 5.23430 5.46655 5.48990 5.65975 5.93098 6.01875 6.14886 6.40683 6.86406 6.91803 6.95003 7.45023 7.48327 8.97113 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.021032 B = 0.002415 C = 0.002244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.015979 B =11591.207940 C =12474.797561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.013 3.987 3 Si 0.948 3.052 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.284 1.284 7 C -0.531 4.531 8 H 0.050 0.950 9 C 0.045 3.955 10 C -0.117 4.117 11 C 0.118 3.882 12 N -0.619 5.619 13 C 0.714 3.286 14 O -0.625 6.625 15 N -0.736 5.736 16 C 0.240 3.760 17 C 0.179 3.821 18 N -0.476 5.476 19 C 0.196 3.804 20 C -0.103 4.103 21 C -0.150 4.150 22 C -0.145 4.145 23 N -0.393 5.393 24 O 0.087 5.913 25 C 0.139 3.861 26 C -0.113 4.113 27 H 0.260 0.740 28 H 0.006 0.994 29 H 0.044 0.956 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.094 0.906 33 H 0.408 0.592 34 H 0.116 0.884 35 H 0.125 0.875 36 H 0.147 0.853 37 H 0.091 0.909 38 H 0.131 0.869 39 H 0.132 0.868 40 H 0.089 0.911 41 H 0.073 0.927 42 H 0.065 0.935 43 H 0.021 0.979 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.220 -24.173 2.042 25.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.185 4.185 3 Si 0.775 3.225 4 H -0.194 1.194 5 H -0.207 1.207 6 H -0.211 1.211 7 C -0.569 4.569 8 H 0.069 0.931 9 C 0.026 3.974 10 C -0.155 4.155 11 C -0.005 4.005 12 N -0.355 5.355 13 C 0.416 3.584 14 O -0.506 6.506 15 N -0.398 5.398 16 C 0.115 3.885 17 C -0.042 4.042 18 N -0.211 5.211 19 C -0.076 4.076 20 C -0.123 4.123 21 C -0.187 4.187 22 C -0.184 4.184 23 N -0.099 5.099 24 O 0.028 5.972 25 C 0.017 3.983 26 C -0.152 4.152 27 H 0.069 0.931 28 H 0.025 0.975 29 H 0.063 0.937 30 H 0.090 0.910 31 H 0.097 0.903 32 H 0.112 0.888 33 H 0.246 0.754 34 H 0.134 0.866 35 H 0.142 0.858 36 H 0.164 0.836 37 H 0.110 0.890 38 H 0.149 0.851 39 H 0.150 0.850 40 H 0.107 0.893 41 H 0.091 0.909 42 H 0.084 0.916 43 H 0.040 0.960 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 7.992 -24.629 2.430 26.007 hybrid contribution 0.328 1.557 -0.282 1.616 sum 8.321 -23.072 2.149 24.620 Atomic orbital electron populations 1.69972 1.06927 1.26983 1.51466 1.25681 0.95664 1.02130 0.95053 0.85654 0.79131 0.80292 0.77441 1.19361 1.20654 1.21053 1.21603 0.92979 0.92227 1.50086 0.93143 1.18614 0.93126 0.92369 0.93285 1.21869 0.98188 0.94362 1.01069 1.21787 0.91203 0.98226 0.89245 1.47439 1.38010 1.20953 1.29081 1.15668 0.80514 0.80042 0.82217 1.90880 1.47050 1.81539 1.31121 1.44925 1.43190 1.16036 1.35631 1.19499 0.95485 0.78992 0.94551 1.28714 0.93047 0.92807 0.89625 1.71937 1.06861 1.17288 1.24990 1.25374 0.98760 0.91123 0.92295 1.20358 0.87710 0.93994 1.10238 1.23161 1.04189 0.98455 0.92944 1.23179 1.04560 0.92669 0.97944 1.74607 0.95062 1.17880 1.22398 1.85330 1.31400 1.32267 1.48213 1.21523 0.90672 0.84634 1.01504 1.21788 0.99360 0.95825 0.98194 0.93056 0.97548 0.93730 0.91014 0.90272 0.88821 0.75408 0.86602 0.85750 0.83564 0.89001 0.85101 0.84953 0.89293 0.90891 0.91627 0.96035 0.90789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.31 11.30 21.45 0.24 -51.07 16 2 C 0.01 0.72 5.30 84.65 0.45 1.17 16 3 Si 0.95 43.01 29.54 68.60 2.03 45.04 16 4 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 5 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 6 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 7 C -0.53 -28.24 8.56 25.60 0.22 -28.02 16 8 H 0.05 2.66 7.74 -2.91 -0.02 2.63 16 9 C 0.04 2.09 2.07 -11.51 -0.02 2.07 16 10 C -0.12 -4.27 5.30 30.67 0.16 -4.11 16 11 C 0.12 3.37 6.38 86.36 0.55 3.92 16 12 N -0.62 -20.56 2.98 -836.18 -2.50 -23.05 16 13 C 0.71 22.60 8.30 179.05 1.49 24.08 16 14 O -0.62 -23.87 15.79 -3.98 -0.06 -23.94 16 15 N -0.74 -16.74 5.46 -482.29 -2.63 -19.37 16 16 C 0.24 4.42 6.30 85.63 0.54 4.96 16 17 C 0.18 3.48 7.88 88.38 0.70 4.17 16 18 N -0.48 -10.59 11.55 -303.20 -3.50 -14.09 16 19 C 0.20 4.07 7.74 138.46 1.07 5.14 16 20 C -0.10 -1.51 6.33 -11.54 -0.07 -1.58 16 21 C -0.15 -1.63 10.14 30.59 0.31 -1.32 16 22 C -0.15 -1.52 10.23 30.59 0.31 -1.20 16 23 N -0.39 -8.58 11.77 -60.32 -0.71 -9.29 16 24 O 0.09 1.77 11.31 74.82 0.85 2.61 16 25 C 0.14 5.40 6.45 86.31 0.56 5.95 16 26 C -0.11 -5.23 5.15 30.67 0.16 -5.07 16 27 H 0.26 13.97 8.31 -92.71 -0.77 13.20 16 28 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 29 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.07 2.46 8.14 -2.38 -0.02 2.44 16 31 H 0.08 2.11 8.14 -2.38 -0.02 2.09 16 32 H 0.09 2.00 5.64 -2.38 -0.01 1.99 16 33 H 0.41 7.99 5.95 -92.71 -0.55 7.43 16 34 H 0.12 2.20 8.14 -2.38 -0.02 2.18 16 35 H 0.12 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.15 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.09 1.24 7.91 -2.39 -0.02 1.22 16 38 H 0.13 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.13 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.09 1.10 8.14 -2.38 -0.02 1.08 16 41 H 0.07 2.90 7.01 -2.39 -0.02 2.88 16 42 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 43 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 44 H 0.07 3.89 6.03 -2.38 -0.01 3.88 16 Total: -1.00 -66.97 363.47 0.61 -66.36 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: 0.48 Total: 16.61 kcal Atomic # 6 Polarization: 3.76 SS G_CDS: 6.42 Total: 10.18 kcal Atomic # 7 Polarization: -107.77 SS G_CDS: -9.10 Total: -116.87 kcal Atomic # 8 Polarization: -22.11 SS G_CDS: 0.78 Total: -21.32 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Total: -66.97 0.61 -66.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781800731.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.153 kcal (2) G-P(sol) polarization free energy of solvation -66.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.360 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds