Wall clock time and date at job start Tue Mar 31 2020 13:23:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35250 * 126.07128 * 2 1 4 4 C 1.40402 * 107.86370 * 179.97438 * 3 2 1 5 5 N 1.40201 * 125.96643 * 180.02562 * 4 3 2 6 6 C 1.34775 * 120.00011 * 359.97438 * 5 4 3 7 7 O 1.21589 * 120.00245 * 0.02562 * 6 5 4 8 8 N 1.34784 * 119.99583 * 179.97438 * 6 5 4 9 9 C 1.46498 * 119.99802 * 179.97438 * 8 6 5 10 10 C 1.52999 * 109.47204 * 180.02562 * 9 8 6 11 11 H 1.08998 * 109.73726 * 60.60777 * 10 9 8 12 12 C 1.53509 * 109.69951 * 181.22542 * 10 9 8 13 13 C 1.53260 * 108.15484 * 182.08880 * 12 10 9 14 14 C 1.50444 * 109.44098 * 313.18149 * 13 12 10 15 15 C 1.30677 * 122.49463 * 17.45684 * 14 13 12 16 16 O 1.35134 * 123.34591 * 359.59531 * 15 14 13 17 17 N 1.31202 * 108.06095 * 0.25916 * 4 3 2 18 18 N 1.34972 * 126.07211 * 179.97438 * 2 1 3 19 19 C 1.46501 * 125.97165 * 0.02562 * 18 2 1 20 20 C 1.50695 * 109.47226 * 90.00150 * 19 18 2 21 21 H 1.07995 * 120.00294 * 359.97438 * 20 19 18 22 22 C 1.37878 * 120.00054 * 179.97438 * 20 19 18 23 23 N 1.31514 * 119.99834 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 120.00242 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.46645 * 60.00547 * 24 22 20 26 26 H 1.48501 * 109.47137 * 179.97438 * 24 22 20 27 27 H 1.48498 * 109.47429 * 300.00529 * 24 22 20 28 28 H 1.09001 * 109.46918 * 90.02385 * 1 2 3 29 29 H 1.08998 * 109.47128 * 210.02391 * 1 2 3 30 30 H 1.08997 * 109.47096 * 330.02316 * 1 2 3 31 31 H 1.07997 * 126.06348 * 359.97438 * 3 2 1 32 32 H 0.97003 * 119.99973 * 179.97438 * 5 4 3 33 33 H 0.96997 * 119.99931 * 0.02562 * 8 6 5 34 34 H 1.09002 * 109.47258 * 59.99861 * 9 8 6 35 35 H 1.09005 * 109.47155 * 300.00244 * 9 8 6 36 36 H 1.08988 * 109.72682 * 62.42798 * 12 10 9 37 37 H 1.08998 * 109.76519 * 301.77363 * 12 10 9 38 38 H 1.09000 * 109.47270 * 193.18619 * 13 12 10 39 39 H 1.08998 * 109.48236 * 73.17334 * 13 12 10 40 40 H 1.07994 * 118.74879 * 197.48337 * 14 13 12 41 41 H 1.07997 * 118.32862 * 179.61777 * 15 14 13 42 42 H 1.09004 * 109.46589 * 209.99676 * 19 18 2 43 43 H 1.08998 * 109.47026 * 329.99255 * 19 18 2 44 44 H 0.97001 * 120.00075 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3033 1.0932 0.0000 4 6 3.6370 0.6545 0.0006 5 7 4.7738 1.4751 0.0013 6 6 4.6370 2.8159 0.0009 7 8 3.5277 3.3139 0.0005 8 7 5.7299 3.6048 0.0021 9 6 5.5812 5.0622 0.0011 10 6 6.9645 5.7159 0.0022 11 1 7.5134 5.4175 -0.8910 12 6 6.8149 7.2434 0.0321 13 6 8.2163 7.8616 -0.0208 14 6 9.1107 7.1597 0.9644 15 6 8.8162 5.9920 1.4720 16 8 7.6871 5.3140 1.1693 17 7 3.6337 -0.6575 -0.0047 18 7 2.3017 -1.0909 0.0005 19 6 1.8500 -2.4846 0.0006 20 6 1.6957 -2.9627 -1.4201 21 1 1.9120 -2.2952 -2.2411 22 6 1.2784 -4.2525 -1.6720 23 7 1.0146 -5.0653 -0.6723 24 14 1.0864 -4.8450 -3.4331 25 1 2.3924 -4.7474 -4.1333 26 1 0.6299 -6.2581 -3.4329 27 1 0.0851 -4.0009 -4.1331 28 1 -0.3633 -0.0004 -1.0277 29 1 -0.3633 -0.8898 0.5142 30 1 -0.3633 0.8902 0.5135 31 1 1.9720 2.1211 -0.0004 32 1 5.6587 1.0779 0.0021 33 1 6.6147 3.2075 0.0029 34 1 5.0318 5.3720 0.8902 35 1 5.0344 5.3711 -0.8898 36 1 6.3139 7.5461 0.9514 37 1 6.2344 7.5739 -0.8292 38 1 8.1564 8.9200 0.2327 39 1 8.6248 7.7511 -1.0253 40 1 10.0309 7.6391 1.2638 41 1 9.5102 5.5464 2.1691 42 1 2.5846 -3.1045 0.5148 43 1 0.8913 -2.5558 0.5142 44 1 0.7213 -5.9728 -0.8494 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000782059461.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:23:22 Heat of formation + Delta-G solvation = 23.942910 kcal Electronic energy + Delta-G solvation = -25874.433918 eV Core-core repulsion = 22022.274707 eV Total energy + Delta-G solvation = -3852.159211 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.83662 -40.51220 -39.44858 -35.45070 -34.62628 -34.37288 -33.35377 -32.12407 -31.25945 -30.69018 -27.82725 -26.50702 -26.25625 -24.45562 -23.37306 -22.80612 -21.44796 -19.95089 -19.59823 -19.29658 -17.92866 -17.08761 -16.70943 -16.64176 -16.25380 -15.71077 -15.41746 -15.13530 -14.72775 -14.42707 -14.25587 -14.14841 -14.01754 -13.64607 -13.39009 -12.94851 -12.91905 -12.65244 -12.43986 -12.23896 -12.10504 -11.63291 -11.38441 -11.35840 -11.20438 -11.08424 -10.95893 -10.78946 -10.42831 -10.21852 -9.98125 -9.62765 -9.51975 -9.22317 -8.83206 -8.61339 -7.86788 -7.35978 -6.22540 -4.30054 1.88116 2.39025 2.69332 2.93072 3.14410 3.25068 3.28702 3.33006 3.61983 3.88398 4.14524 4.19425 4.31840 4.40937 4.46910 4.62099 4.77413 4.90451 5.10904 5.12525 5.18649 5.28919 5.42848 5.43352 5.50994 5.65959 5.75520 5.86379 5.96357 6.09558 6.15673 6.23337 6.27532 6.50190 6.63291 6.66709 6.98541 7.09147 7.15845 7.18388 7.57052 7.70100 7.92311 7.98903 8.11409 8.62793 8.71534 8.79430 9.35916 10.84538 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.028308 B = 0.002075 C = 0.002035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.865177 B =13489.511086 C =13755.303055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.090 3.910 3 C -0.289 4.289 4 C 0.283 3.717 5 N -0.643 5.643 6 C 0.714 3.286 7 O -0.568 6.568 8 N -0.741 5.741 9 C 0.150 3.850 10 C 0.077 3.923 11 H 0.080 0.920 12 C -0.153 4.153 13 C -0.081 4.081 14 C -0.285 4.285 15 C 0.057 3.943 16 O -0.317 6.317 17 N -0.324 5.324 18 N -0.319 5.319 19 C 0.259 3.741 20 C -0.535 4.535 21 H 0.064 0.936 22 C 0.065 3.935 23 N -0.892 5.892 24 Si 0.906 3.094 25 H -0.275 1.275 26 H -0.284 1.284 27 H -0.274 1.274 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.160 0.840 32 H 0.406 0.594 33 H 0.400 0.600 34 H 0.078 0.922 35 H 0.088 0.912 36 H 0.080 0.920 37 H 0.086 0.914 38 H 0.077 0.923 39 H 0.071 0.929 40 H 0.120 0.880 41 H 0.157 0.843 42 H 0.051 0.949 43 H 0.054 0.946 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.051 23.682 2.554 27.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.041 4.041 3 C -0.320 4.320 4 C 0.029 3.971 5 N -0.293 5.293 6 C 0.413 3.587 7 O -0.443 6.443 8 N -0.398 5.398 9 C 0.026 3.974 10 C 0.020 3.980 11 H 0.098 0.902 12 C -0.191 4.191 13 C -0.118 4.118 14 C -0.305 4.305 15 C -0.006 4.006 16 O -0.231 6.231 17 N -0.155 5.155 18 N -0.101 5.101 19 C 0.141 3.859 20 C -0.573 4.573 21 H 0.082 0.918 22 C -0.138 4.138 23 N -0.530 5.530 24 Si 0.733 3.267 25 H -0.200 1.200 26 H -0.210 1.210 27 H -0.199 1.199 28 H 0.095 0.905 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.178 0.822 32 H 0.241 0.759 33 H 0.235 0.765 34 H 0.096 0.904 35 H 0.106 0.894 36 H 0.099 0.901 37 H 0.104 0.896 38 H 0.096 0.904 39 H 0.089 0.911 40 H 0.138 0.862 41 H 0.174 0.826 42 H 0.069 0.931 43 H 0.072 0.928 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 12.549 22.627 2.705 26.015 hybrid contribution 0.671 0.048 -1.057 1.253 sum 13.220 22.675 1.648 26.300 Atomic orbital electron populations 1.20324 0.87946 1.02771 1.03116 1.21059 0.94872 0.87182 1.00994 1.21233 0.89697 0.99802 1.21302 1.18658 0.86552 0.89248 1.02623 1.41370 1.07623 1.03699 1.76613 1.15587 0.84632 0.80432 0.78045 1.90872 1.23518 1.73510 1.56402 1.44858 1.07881 1.06062 1.81017 1.21249 0.93990 0.78428 1.03763 1.22797 0.92564 0.94925 0.87664 0.90211 1.22205 0.98364 0.94167 1.04334 1.20335 0.93202 0.99742 0.98515 1.22527 1.03591 0.97757 1.06614 1.22029 0.87624 0.92413 0.98505 1.85977 1.35756 1.57188 1.44200 1.77248 0.99925 1.08330 1.29962 1.48958 1.00899 1.07713 1.52532 1.19665 0.95941 0.71402 0.98852 1.21289 1.46739 0.97900 0.91422 0.91828 1.24928 0.94726 0.96092 0.98077 1.69912 1.44963 1.07111 1.31038 0.86414 0.78781 0.77646 0.83826 1.20027 1.20987 1.19943 0.90477 0.90908 0.90847 0.82236 0.75903 0.76549 0.90381 0.89380 0.90099 0.89577 0.90421 0.91102 0.86219 0.82585 0.93053 0.92809 0.92238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.46 10.11 36.00 0.36 -1.09 16 2 C 0.09 1.95 6.93 -82.28 -0.57 1.38 16 3 C -0.29 -6.13 9.52 -39.83 -0.38 -6.51 16 4 C 0.28 5.91 8.11 -154.36 -1.25 4.66 16 5 N -0.64 -10.36 5.46 -15.50 -0.08 -10.44 16 6 C 0.71 10.83 8.53 -86.91 -0.74 10.09 16 7 O -0.57 -10.49 13.47 5.29 0.07 -10.42 16 8 N -0.74 -7.78 5.46 -65.22 -0.36 -8.13 16 9 C 0.15 1.32 5.39 -4.04 -0.02 1.30 16 10 C 0.08 0.53 2.94 -26.47 -0.08 0.45 16 11 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 12 C -0.15 -0.87 5.54 -26.33 -0.15 -1.02 16 13 C -0.08 -0.44 6.23 -27.87 -0.17 -0.62 16 14 C -0.29 -1.77 9.97 -36.06 -0.36 -2.13 16 15 C 0.06 0.39 10.88 29.10 0.32 0.71 16 16 O -0.32 -2.64 9.81 -17.10 -0.17 -2.81 16 17 N -0.32 -7.63 12.59 31.44 0.40 -7.24 16 18 N -0.32 -7.70 3.59 -58.32 -0.21 -7.91 16 19 C 0.26 6.74 5.99 -5.20 -0.03 6.70 16 20 C -0.53 -14.89 9.39 -34.44 -0.32 -15.21 16 21 H 0.06 1.82 7.81 -52.49 -0.41 1.41 16 22 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 23 N -0.89 -25.24 13.29 55.43 0.74 -24.50 16 24 Si 0.91 21.27 29.54 -169.99 -5.02 16.25 16 25 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 26 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 27 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 28 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 29 H 0.07 1.28 7.07 -51.93 -0.37 0.91 16 30 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.16 3.32 5.91 -52.49 -0.31 3.01 16 32 H 0.41 5.27 8.84 -40.82 -0.36 4.91 16 33 H 0.40 3.29 8.37 -40.82 -0.34 2.95 16 34 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.08 0.51 8.14 -51.94 -0.42 0.09 16 37 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.12 0.60 8.06 -52.49 -0.42 0.18 16 41 H 0.16 0.75 8.06 -52.49 -0.42 0.32 16 42 H 0.05 1.42 8.14 -51.93 -0.42 1.00 16 43 H 0.05 1.38 7.04 -51.93 -0.37 1.01 16 44 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 370.38 15.07 5.58 5.58 Total: -1.00 -33.71 370.38 -8.91 -42.62 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: -6.36 Total: 6.60 kcal Atomic # 6 Polarization: 3.90 SS G_CDS: -3.49 Total: 0.41 kcal Atomic # 7 Polarization: -58.71 SS G_CDS: 0.48 Total: -58.23 kcal Atomic # 8 Polarization: -13.13 SS G_CDS: -0.10 Total: -13.23 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.71 -8.91 -42.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782059461.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.562 kcal (2) G-P(sol) polarization free energy of solvation -33.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.619 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds