Wall clock time and date at job start Tue Mar 31 2020 13:23:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35250 * 126.07128 * 2 1 4 4 C 1.40402 * 107.86370 * 179.97438 * 3 2 1 5 5 N 1.40201 * 125.96643 * 180.02562 * 4 3 2 6 6 C 1.34775 * 120.00011 * 359.97438 * 5 4 3 7 7 O 1.21589 * 120.00245 * 0.02562 * 6 5 4 8 8 N 1.34784 * 119.99583 * 179.97438 * 6 5 4 9 9 C 1.46498 * 119.99802 * 179.97438 * 8 6 5 10 10 C 1.52999 * 109.47204 * 180.02562 * 9 8 6 11 11 H 1.08998 * 109.73726 * 60.60777 * 10 9 8 12 12 C 1.53509 * 109.69951 * 181.22542 * 10 9 8 13 13 C 1.53260 * 108.15484 * 182.08880 * 12 10 9 14 14 C 1.50444 * 109.44098 * 313.18149 * 13 12 10 15 15 C 1.30677 * 122.49463 * 17.45684 * 14 13 12 16 16 O 1.35134 * 123.34591 * 359.59531 * 15 14 13 17 17 N 1.31202 * 108.06095 * 0.25916 * 4 3 2 18 18 N 1.34972 * 126.07211 * 179.97438 * 2 1 3 19 19 C 1.46501 * 125.97165 * 0.02562 * 18 2 1 20 20 C 1.50695 * 109.47226 * 90.00150 * 19 18 2 21 21 H 1.07995 * 120.00294 * 359.97438 * 20 19 18 22 22 C 1.37878 * 120.00054 * 179.97438 * 20 19 18 23 23 N 1.31514 * 119.99834 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 120.00242 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.46645 * 60.00547 * 24 22 20 26 26 H 1.48501 * 109.47137 * 179.97438 * 24 22 20 27 27 H 1.48498 * 109.47429 * 300.00529 * 24 22 20 28 28 H 1.09001 * 109.46918 * 90.02385 * 1 2 3 29 29 H 1.08998 * 109.47128 * 210.02391 * 1 2 3 30 30 H 1.08997 * 109.47096 * 330.02316 * 1 2 3 31 31 H 1.07997 * 126.06348 * 359.97438 * 3 2 1 32 32 H 0.97003 * 119.99973 * 179.97438 * 5 4 3 33 33 H 0.96997 * 119.99931 * 0.02562 * 8 6 5 34 34 H 1.09002 * 109.47258 * 59.99861 * 9 8 6 35 35 H 1.09005 * 109.47155 * 300.00244 * 9 8 6 36 36 H 1.08988 * 109.72682 * 62.42798 * 12 10 9 37 37 H 1.08998 * 109.76519 * 301.77363 * 12 10 9 38 38 H 1.09000 * 109.47270 * 193.18619 * 13 12 10 39 39 H 1.08998 * 109.48236 * 73.17334 * 13 12 10 40 40 H 1.07994 * 118.74879 * 197.48337 * 14 13 12 41 41 H 1.07997 * 118.32862 * 179.61777 * 15 14 13 42 42 H 1.09004 * 109.46589 * 209.99676 * 19 18 2 43 43 H 1.08998 * 109.47026 * 329.99255 * 19 18 2 44 44 H 0.97001 * 120.00075 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3033 1.0932 0.0000 4 6 3.6370 0.6545 0.0006 5 7 4.7738 1.4751 0.0013 6 6 4.6370 2.8159 0.0009 7 8 3.5277 3.3139 0.0005 8 7 5.7299 3.6048 0.0021 9 6 5.5812 5.0622 0.0011 10 6 6.9645 5.7159 0.0022 11 1 7.5134 5.4175 -0.8910 12 6 6.8149 7.2434 0.0321 13 6 8.2163 7.8616 -0.0208 14 6 9.1107 7.1597 0.9644 15 6 8.8162 5.9920 1.4720 16 8 7.6871 5.3140 1.1693 17 7 3.6337 -0.6575 -0.0047 18 7 2.3017 -1.0909 0.0005 19 6 1.8500 -2.4846 0.0006 20 6 1.6957 -2.9627 -1.4201 21 1 1.9120 -2.2952 -2.2411 22 6 1.2784 -4.2525 -1.6720 23 7 1.0146 -5.0653 -0.6723 24 14 1.0864 -4.8450 -3.4331 25 1 2.3924 -4.7474 -4.1333 26 1 0.6299 -6.2581 -3.4329 27 1 0.0851 -4.0009 -4.1331 28 1 -0.3633 -0.0004 -1.0277 29 1 -0.3633 -0.8898 0.5142 30 1 -0.3633 0.8902 0.5135 31 1 1.9720 2.1211 -0.0004 32 1 5.6587 1.0779 0.0021 33 1 6.6147 3.2075 0.0029 34 1 5.0318 5.3720 0.8902 35 1 5.0344 5.3711 -0.8898 36 1 6.3139 7.5461 0.9514 37 1 6.2344 7.5739 -0.8292 38 1 8.1564 8.9200 0.2327 39 1 8.6248 7.7511 -1.0253 40 1 10.0309 7.6391 1.2638 41 1 9.5102 5.5464 2.1691 42 1 2.5846 -3.1045 0.5148 43 1 0.8913 -2.5558 0.5142 44 1 0.7213 -5.9728 -0.8494 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000782059461.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:23:21 Heat of formation + Delta-G solvation = 1.694014 kcal Electronic energy + Delta-G solvation = -25875.398702 eV Core-core repulsion = 22022.274707 eV Total energy + Delta-G solvation = -3853.123995 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.30108 -41.30800 -40.65036 -36.59291 -35.96259 -35.28800 -34.85199 -33.23627 -32.67507 -32.27885 -28.86253 -28.09167 -27.81827 -25.28239 -24.71082 -23.81539 -22.70079 -21.36412 -21.09473 -19.93419 -19.12828 -18.76180 -17.86427 -17.67167 -17.28951 -17.01654 -16.64113 -16.38651 -16.05042 -15.80613 -15.64435 -15.03071 -14.92553 -14.61313 -14.47259 -14.22995 -13.84004 -13.78327 -13.71563 -13.56986 -13.45680 -13.20261 -13.09247 -12.83954 -12.64651 -12.23043 -12.10564 -11.81505 -11.72212 -11.59078 -11.44162 -11.35147 -11.11657 -10.71902 -10.24060 -9.54707 -9.31424 -9.06214 -8.30884 -6.48729 1.02905 1.11705 1.39045 1.40772 1.42427 1.49785 1.67516 2.08058 2.36150 2.37949 2.44410 2.98311 3.11866 3.59965 3.77915 3.88467 3.96439 4.13172 4.18762 4.29359 4.45731 4.47251 4.55395 4.65890 4.73899 4.78863 4.80781 4.87095 4.91373 4.99403 5.02895 5.03240 5.14230 5.20422 5.22157 5.40175 5.44627 5.55216 5.65786 5.82737 5.85920 5.98748 6.28979 6.62780 6.65987 6.74688 7.13724 7.21909 7.41671 8.74542 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.028308 B = 0.002075 C = 0.002035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.865177 B =13489.511086 C =13755.303055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.087 3.913 3 C -0.298 4.298 4 C 0.292 3.708 5 N -0.636 5.636 6 C 0.712 3.288 7 O -0.600 6.600 8 N -0.720 5.720 9 C 0.148 3.852 10 C 0.082 3.918 11 H 0.092 0.908 12 C -0.151 4.151 13 C -0.084 4.084 14 C -0.286 4.286 15 C 0.039 3.961 16 O -0.336 6.336 17 N -0.361 5.361 18 N -0.343 5.343 19 C 0.275 3.725 20 C -0.553 4.553 21 H 0.049 0.951 22 C 0.022 3.978 23 N -0.918 5.918 24 Si 0.971 3.029 25 H -0.276 1.276 26 H -0.273 1.273 27 H -0.265 1.265 28 H 0.083 0.917 29 H 0.068 0.932 30 H 0.105 0.895 31 H 0.167 0.833 32 H 0.421 0.579 33 H 0.414 0.586 34 H 0.067 0.933 35 H 0.095 0.905 36 H 0.072 0.928 37 H 0.101 0.899 38 H 0.086 0.914 39 H 0.079 0.921 40 H 0.131 0.869 41 H 0.171 0.829 42 H 0.024 0.976 43 H 0.053 0.947 44 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.643 25.216 1.504 28.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.044 4.044 3 C -0.329 4.329 4 C 0.037 3.963 5 N -0.288 5.288 6 C 0.412 3.588 7 O -0.478 6.478 8 N -0.376 5.376 9 C 0.025 3.975 10 C 0.026 3.974 11 H 0.109 0.891 12 C -0.189 4.189 13 C -0.121 4.121 14 C -0.305 4.305 15 C -0.023 4.023 16 O -0.251 6.251 17 N -0.191 5.191 18 N -0.126 5.126 19 C 0.156 3.844 20 C -0.591 4.591 21 H 0.068 0.932 22 C -0.179 4.179 23 N -0.556 5.556 24 Si 0.795 3.205 25 H -0.201 1.201 26 H -0.198 1.198 27 H -0.190 1.190 28 H 0.102 0.898 29 H 0.087 0.913 30 H 0.124 0.876 31 H 0.184 0.816 32 H 0.258 0.742 33 H 0.251 0.749 34 H 0.085 0.915 35 H 0.113 0.887 36 H 0.091 0.909 37 H 0.119 0.881 38 H 0.104 0.896 39 H 0.097 0.903 40 H 0.148 0.852 41 H 0.188 0.812 42 H 0.042 0.958 43 H 0.070 0.930 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 13.202 24.203 1.666 27.619 hybrid contribution 0.576 -0.277 -0.673 0.928 sum 13.778 23.926 0.993 27.627 Atomic orbital electron populations 1.20463 0.85344 1.04188 1.03931 1.21745 0.96652 0.86445 0.99509 1.21406 0.89921 0.99893 1.21654 1.18946 0.88066 0.88901 1.00374 1.41373 1.07091 1.03829 1.76490 1.15752 0.85210 0.80101 0.77780 1.90840 1.25154 1.73912 1.57911 1.44768 1.07273 1.06494 1.79101 1.21403 0.95478 0.77054 1.03591 1.22768 0.91356 0.95490 0.87825 0.89057 1.22211 0.98847 0.93171 1.04650 1.20409 0.92790 1.00117 0.98800 1.22773 1.03982 0.97525 1.06228 1.22342 0.87616 0.92955 0.99386 1.85940 1.36499 1.57884 1.44766 1.77167 1.00077 1.09742 1.32143 1.48763 1.01657 1.07469 1.54708 1.19241 0.94911 0.72435 0.97779 1.21406 1.47544 0.98345 0.91781 0.93232 1.25742 0.93983 0.95945 1.02247 1.69997 1.45064 1.07524 1.33027 0.85409 0.78728 0.77652 0.78712 1.20104 1.19768 1.18992 0.89810 0.91278 0.87601 0.81586 0.74195 0.74949 0.91507 0.88658 0.90899 0.88070 0.89561 0.90297 0.85155 0.81180 0.95800 0.92975 0.91755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.78 10.11 71.24 0.72 -2.06 16 2 C 0.09 3.75 6.93 41.39 0.29 4.04 16 3 C -0.30 -12.56 9.52 22.11 0.21 -12.35 16 4 C 0.29 12.25 8.11 133.31 1.08 13.33 16 5 N -0.64 -20.08 5.46 -321.23 -1.75 -21.83 16 6 C 0.71 20.92 8.53 179.05 1.53 22.45 16 7 O -0.60 -21.76 13.47 -4.00 -0.05 -21.82 16 8 N -0.72 -14.05 5.46 -478.52 -2.61 -16.66 16 9 C 0.15 2.40 5.39 86.38 0.47 2.87 16 10 C 0.08 0.99 2.94 30.76 0.09 1.08 16 11 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 12 C -0.15 -1.44 5.54 30.85 0.17 -1.27 16 13 C -0.08 -0.74 6.23 29.85 0.19 -0.55 16 14 C -0.29 -3.00 9.97 25.90 0.26 -2.74 16 15 C 0.04 0.47 10.88 68.11 0.74 1.21 16 16 O -0.34 -5.12 9.81 -84.11 -0.82 -5.95 16 17 N -0.36 -17.33 12.59 -54.43 -0.69 -18.01 16 18 N -0.34 -16.98 3.59 -338.44 -1.22 -18.20 16 19 C 0.28 14.77 5.99 85.63 0.51 15.29 16 20 C -0.55 -31.30 9.39 25.60 0.24 -31.06 16 21 H 0.05 2.89 7.81 -2.91 -0.02 2.87 16 22 C 0.02 1.20 5.46 84.65 0.46 1.66 16 23 N -0.92 -52.22 13.29 21.45 0.28 -51.94 16 24 Si 0.97 43.32 29.54 68.60 2.03 45.35 16 25 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 26 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 27 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 28 H 0.08 2.76 8.14 -2.39 -0.02 2.74 16 29 H 0.07 2.40 7.07 -2.39 -0.02 2.38 16 30 H 0.11 2.88 8.14 -2.39 -0.02 2.86 16 31 H 0.17 6.81 5.91 -2.91 -0.02 6.79 16 32 H 0.42 10.55 8.84 -92.71 -0.82 9.73 16 33 H 0.41 6.04 8.37 -92.71 -0.78 5.27 16 34 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.10 1.45 8.14 -2.38 -0.02 1.43 16 36 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 38 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 39 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 40 H 0.13 1.05 8.06 -2.91 -0.02 1.03 16 41 H 0.17 1.39 8.06 -2.91 -0.02 1.37 16 42 H 0.02 1.39 8.14 -2.38 -0.02 1.37 16 43 H 0.05 2.77 7.04 -2.39 -0.02 2.75 16 44 H 0.27 14.54 8.31 -92.71 -0.77 13.77 16 Total: -1.00 -72.74 370.38 1.56 -71.18 By element: Atomic # 1 Polarization: 26.53 SS G_CDS: -0.56 Total: 25.97 kcal Atomic # 6 Polarization: 4.94 SS G_CDS: 6.95 Total: 11.90 kcal Atomic # 7 Polarization: -120.65 SS G_CDS: -5.98 Total: -126.63 kcal Atomic # 8 Polarization: -26.89 SS G_CDS: -0.88 Total: -27.76 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Total: -72.74 1.56 -71.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782059461.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.875 kcal (2) G-P(sol) polarization free energy of solvation -72.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.181 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds