Wall clock time and date at job start Tue Mar 31 2020 13:23:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35242 * 126.07061 * 2 1 4 4 C 1.40403 * 107.86573 * 179.88575 * 3 2 1 5 5 N 1.40197 * 125.97076 * 180.17694 * 4 3 2 6 6 C 1.34779 * 119.99933 * 0.27046 * 5 4 3 7 7 O 1.21587 * 120.00087 * 0.02562 * 6 5 4 8 8 N 1.34773 * 119.99884 * 180.02562 * 6 5 4 9 9 C 1.46496 * 120.00351 * 180.02562 * 8 6 5 10 10 C 1.52996 * 109.47432 * 180.02562 * 9 8 6 11 11 H 1.08997 * 109.70528 * 305.57880 * 10 9 8 12 12 C 1.53509 * 109.70698 * 184.99832 * 10 9 8 13 13 C 1.53258 * 108.15513 * 177.91281 * 12 10 9 14 14 C 1.50437 * 109.44087 * 46.82511 * 13 12 10 15 15 C 1.30684 * 122.49935 * 342.53494 * 14 13 12 16 16 O 1.35135 * 123.34056 * 0.39650 * 15 14 13 17 17 N 1.31207 * 108.05321 * 0.38632 * 4 3 2 18 18 N 1.34966 * 126.06879 * 180.31555 * 2 1 3 19 19 C 1.46505 * 125.97595 * 359.97438 * 18 2 1 20 20 C 1.50697 * 109.46937 * 90.00029 * 19 18 2 21 21 H 1.07995 * 120.00373 * 359.97438 * 20 19 18 22 22 C 1.37875 * 119.99518 * 179.97438 * 20 19 18 23 23 N 1.31519 * 120.00606 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99959 * 179.97438 * 22 20 19 25 25 H 1.48494 * 109.47308 * 90.00198 * 24 22 20 26 26 H 1.48500 * 109.47469 * 210.00098 * 24 22 20 27 27 H 1.48504 * 109.47047 * 329.99981 * 24 22 20 28 28 H 1.09001 * 109.46953 * 269.68381 * 1 2 3 29 29 H 1.09000 * 109.47318 * 29.67979 * 1 2 3 30 30 H 1.09000 * 109.47161 * 149.68610 * 1 2 3 31 31 H 1.08001 * 126.06674 * 0.03004 * 3 2 1 32 32 H 0.96995 * 119.99530 * 180.27892 * 5 4 3 33 33 H 0.97005 * 119.99816 * 0.02562 * 8 6 5 34 34 H 1.09013 * 109.46927 * 300.00308 * 9 8 6 35 35 H 1.08998 * 109.47045 * 59.99894 * 9 8 6 36 36 H 1.09002 * 109.72309 * 297.57639 * 12 10 9 37 37 H 1.09001 * 109.72114 * 58.24689 * 12 10 9 38 38 H 1.09003 * 109.47284 * 166.81814 * 13 12 10 39 39 H 1.09003 * 109.47398 * 286.83169 * 13 12 10 40 40 H 1.08003 * 118.74994 * 162.52159 * 14 13 12 41 41 H 1.07996 * 118.32939 * 180.42881 * 15 14 13 42 42 H 1.09004 * 109.46742 * 210.00004 * 19 18 2 43 43 H 1.08993 * 109.46661 * 329.99390 * 19 18 2 44 44 H 0.97000 * 120.00161 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3033 1.0932 0.0000 4 6 3.6371 0.6545 0.0027 5 7 4.7738 1.4751 0.0070 6 6 4.6370 2.8159 0.0146 7 8 3.5278 3.3138 0.0180 8 7 5.7298 3.6047 0.0182 9 6 5.5812 5.0621 0.0270 10 6 6.9645 5.7158 0.0290 11 1 7.5530 5.3282 0.8605 12 6 6.8175 7.2379 0.1640 13 6 8.2214 7.8505 0.2149 14 6 9.0670 7.2563 -0.8782 15 6 8.7463 6.1466 -1.4894 16 8 7.6311 5.4381 -1.2058 17 7 3.6336 -0.6575 -0.0042 18 7 2.3017 -1.0909 -0.0060 19 6 1.8500 -2.4846 -0.0132 20 6 1.6947 -2.9550 -1.4364 21 1 1.9103 -2.2830 -2.2538 22 6 1.2772 -4.2433 -1.6949 23 7 1.0141 -5.0616 -0.6994 24 14 1.0839 -4.8263 -3.4590 25 1 2.3647 -5.4117 -3.9301 26 1 0.0152 -5.8551 -3.5262 27 1 0.7181 -3.6754 -4.3234 28 1 -0.3633 -0.0057 1.0277 29 1 -0.3634 0.8928 -0.5088 30 1 -0.3633 -0.8872 -0.5187 31 1 1.9721 2.1211 0.0005 32 1 5.6587 1.0778 0.0045 33 1 6.6147 3.2074 0.0151 34 1 5.0323 5.3767 -0.8608 35 1 5.0340 5.3662 0.9192 36 1 6.2748 7.6327 -0.6949 37 1 6.2788 7.4755 1.0813 38 1 8.1523 8.9294 0.0753 39 1 8.6759 7.6376 1.1825 40 1 9.9735 7.7663 -1.1691 41 1 9.4063 5.7767 -2.2600 42 1 2.5849 -3.1073 0.4972 43 1 0.8917 -2.5585 0.5007 44 1 0.7201 -5.9679 -0.8814 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000782059462.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:23:25 Heat of formation + Delta-G solvation = 23.624449 kcal Electronic energy + Delta-G solvation = -25870.443648 eV Core-core repulsion = 22018.270628 eV Total energy + Delta-G solvation = -3852.173020 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.83515 -40.51004 -39.45543 -35.46295 -34.63290 -34.36503 -33.35741 -32.12477 -31.25381 -30.69227 -27.82132 -26.50466 -26.25562 -24.45555 -23.37294 -22.80400 -21.46398 -19.96930 -19.61691 -19.26424 -17.92101 -17.08668 -16.70323 -16.63514 -16.28489 -15.72222 -15.37876 -15.15299 -14.73666 -14.43531 -14.26899 -14.12831 -13.99595 -13.60469 -13.38697 -12.96168 -12.90394 -12.67011 -12.44698 -12.27588 -12.07394 -11.63471 -11.38583 -11.37122 -11.20325 -11.06810 -10.94384 -10.81723 -10.40802 -10.22705 -9.98016 -9.63086 -9.50739 -9.23160 -8.82779 -8.62087 -7.86976 -7.36194 -6.22981 -4.30556 1.88659 2.38919 2.68464 2.93702 3.13918 3.23527 3.29650 3.34576 3.61555 3.88058 4.14369 4.19577 4.31874 4.40700 4.46615 4.62300 4.77074 4.90714 5.10392 5.12757 5.18406 5.28317 5.43147 5.43451 5.51314 5.65968 5.76117 5.87000 5.98679 6.09902 6.14243 6.22553 6.27257 6.53374 6.62376 6.68287 6.99113 7.08221 7.16449 7.17447 7.56861 7.70112 7.91930 7.98225 8.11413 8.62207 8.71508 8.79572 9.35721 10.84047 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.025374 B = 0.002127 C = 0.002035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.206858 B =13158.560641 C =13755.933721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.091 3.909 3 C -0.289 4.289 4 C 0.282 3.718 5 N -0.643 5.643 6 C 0.714 3.286 7 O -0.567 6.567 8 N -0.742 5.742 9 C 0.149 3.851 10 C 0.077 3.923 11 H 0.080 0.920 12 C -0.153 4.153 13 C -0.081 4.081 14 C -0.286 4.286 15 C 0.057 3.943 16 O -0.317 6.317 17 N -0.324 5.324 18 N -0.319 5.319 19 C 0.259 3.741 20 C -0.535 4.535 21 H 0.064 0.936 22 C 0.065 3.935 23 N -0.892 5.892 24 Si 0.906 3.094 25 H -0.278 1.278 26 H -0.283 1.283 27 H -0.272 1.272 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.160 0.840 32 H 0.406 0.594 33 H 0.400 0.600 34 H 0.079 0.921 35 H 0.089 0.911 36 H 0.081 0.919 37 H 0.086 0.914 38 H 0.077 0.923 39 H 0.070 0.930 40 H 0.120 0.880 41 H 0.157 0.843 42 H 0.051 0.949 43 H 0.054 0.946 44 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.041 23.625 3.200 27.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.041 4.041 3 C -0.320 4.320 4 C 0.029 3.971 5 N -0.293 5.293 6 C 0.413 3.587 7 O -0.443 6.443 8 N -0.399 5.399 9 C 0.025 3.975 10 C 0.021 3.979 11 H 0.098 0.902 12 C -0.191 4.191 13 C -0.118 4.118 14 C -0.305 4.305 15 C -0.006 4.006 16 O -0.231 6.231 17 N -0.155 5.155 18 N -0.101 5.101 19 C 0.141 3.859 20 C -0.574 4.574 21 H 0.083 0.917 22 C -0.138 4.138 23 N -0.530 5.530 24 Si 0.733 3.267 25 H -0.204 1.204 26 H -0.209 1.209 27 H -0.196 1.196 28 H 0.089 0.911 29 H 0.094 0.906 30 H 0.100 0.900 31 H 0.178 0.822 32 H 0.241 0.759 33 H 0.234 0.766 34 H 0.097 0.903 35 H 0.107 0.893 36 H 0.099 0.901 37 H 0.104 0.896 38 H 0.096 0.904 39 H 0.089 0.911 40 H 0.138 0.862 41 H 0.174 0.826 42 H 0.069 0.931 43 H 0.072 0.928 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 12.530 22.587 3.138 26.019 hybrid contribution 0.693 0.035 -0.854 1.100 sum 13.223 22.622 2.284 26.302 Atomic orbital electron populations 1.20370 0.87983 1.03822 1.02469 1.21056 0.94881 0.87151 1.00983 1.21239 0.89709 0.99819 1.21230 1.18659 0.86550 0.89246 1.02658 1.41369 1.07624 1.03699 1.76615 1.15581 0.84629 0.80428 0.78047 1.90873 1.23510 1.73508 1.56364 1.44891 1.07851 1.06096 1.81064 1.21237 0.94081 0.78343 1.03827 1.22783 0.93407 0.95767 0.85986 0.90228 1.22208 0.98370 0.94256 1.04232 1.20335 0.93491 1.00321 0.97630 1.22527 1.04075 0.99248 1.04687 1.22038 0.87743 0.91941 0.98833 1.85997 1.38102 1.60226 1.38765 1.77241 0.99966 1.08337 1.29931 1.48960 1.00883 1.07717 1.52553 1.19670 0.95942 0.71414 0.98857 1.21338 1.46652 0.97932 0.91436 0.91738 1.24932 0.94724 0.96070 0.98110 1.69923 1.45028 1.06936 1.31118 0.86359 0.77983 0.78549 0.83816 1.20366 1.20908 1.19650 0.91138 0.90648 0.89955 0.82242 0.75913 0.76635 0.90277 0.89333 0.90079 0.89588 0.90420 0.91114 0.86216 0.82588 0.93053 0.92811 0.92292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.54 9.89 36.01 0.36 -1.19 16 2 C 0.09 1.96 6.93 -82.28 -0.57 1.39 16 3 C -0.29 -6.12 9.52 -39.83 -0.38 -6.50 16 4 C 0.28 5.90 8.11 -154.36 -1.25 4.65 16 5 N -0.64 -10.33 5.46 -15.51 -0.08 -10.41 16 6 C 0.71 10.81 8.53 -86.92 -0.74 10.07 16 7 O -0.57 -10.48 13.47 5.29 0.07 -10.41 16 8 N -0.74 -7.74 5.53 -65.23 -0.36 -8.10 16 9 C 0.15 1.32 5.36 -4.05 -0.02 1.29 16 10 C 0.08 0.53 2.88 -26.47 -0.08 0.46 16 11 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 12 C -0.15 -0.87 5.54 -26.33 -0.15 -1.02 16 13 C -0.08 -0.44 6.23 -27.88 -0.17 -0.62 16 14 C -0.29 -1.79 9.97 -36.07 -0.36 -2.15 16 15 C 0.06 0.40 10.88 29.10 0.32 0.72 16 16 O -0.32 -2.71 10.02 -17.11 -0.17 -2.88 16 17 N -0.32 -7.62 12.59 31.44 0.40 -7.23 16 18 N -0.32 -7.69 3.59 -58.32 -0.21 -7.90 16 19 C 0.26 6.72 5.81 -5.19 -0.03 6.69 16 20 C -0.53 -14.88 9.39 -34.44 -0.32 -15.21 16 21 H 0.06 1.86 7.81 -52.49 -0.41 1.45 16 22 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 23 N -0.89 -25.21 13.29 55.43 0.74 -24.48 16 24 Si 0.91 21.29 29.54 -169.99 -5.02 16.27 16 25 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 26 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 27 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 28 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 29 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.08 1.54 7.71 -51.93 -0.40 1.14 16 31 H 0.16 3.32 5.91 -52.49 -0.31 3.01 16 32 H 0.41 5.24 8.84 -40.82 -0.36 4.88 16 33 H 0.40 3.22 8.49 -40.82 -0.35 2.87 16 34 H 0.08 0.80 8.14 -51.92 -0.42 0.38 16 35 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.12 0.61 8.06 -52.48 -0.42 0.19 16 41 H 0.16 0.78 8.06 -52.49 -0.42 0.36 16 42 H 0.05 1.42 8.14 -51.93 -0.42 0.99 16 43 H 0.05 1.38 7.65 -51.93 -0.40 0.98 16 44 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 371.55 15.07 5.60 5.60 Total: -1.00 -33.77 371.55 -8.97 -42.75 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: -6.43 Total: 6.53 kcal Atomic # 6 Polarization: 3.76 SS G_CDS: -3.50 Total: 0.26 kcal Atomic # 7 Polarization: -58.60 SS G_CDS: 0.48 Total: -58.12 kcal Atomic # 8 Polarization: -13.19 SS G_CDS: -0.10 Total: -13.29 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.77 -8.97 -42.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782059462.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.370 kcal (2) G-P(sol) polarization free energy of solvation -33.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.745 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds