Wall clock time and date at job start Tue Mar 31 2020 13:23:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35242 * 126.07061 * 2 1 4 4 C 1.40403 * 107.86573 * 179.88575 * 3 2 1 5 5 N 1.40197 * 125.97076 * 180.17694 * 4 3 2 6 6 C 1.34779 * 119.99933 * 0.27046 * 5 4 3 7 7 O 1.21587 * 120.00087 * 0.02562 * 6 5 4 8 8 N 1.34773 * 119.99884 * 180.02562 * 6 5 4 9 9 C 1.46496 * 120.00351 * 180.02562 * 8 6 5 10 10 C 1.52996 * 109.47432 * 180.02562 * 9 8 6 11 11 H 1.08997 * 109.70528 * 305.57880 * 10 9 8 12 12 C 1.53509 * 109.70698 * 184.99832 * 10 9 8 13 13 C 1.53258 * 108.15513 * 177.91281 * 12 10 9 14 14 C 1.50437 * 109.44087 * 46.82511 * 13 12 10 15 15 C 1.30684 * 122.49935 * 342.53494 * 14 13 12 16 16 O 1.35135 * 123.34056 * 0.39650 * 15 14 13 17 17 N 1.31207 * 108.05321 * 0.38632 * 4 3 2 18 18 N 1.34966 * 126.06879 * 180.31555 * 2 1 3 19 19 C 1.46505 * 125.97595 * 359.97438 * 18 2 1 20 20 C 1.50697 * 109.46937 * 90.00029 * 19 18 2 21 21 H 1.07995 * 120.00373 * 359.97438 * 20 19 18 22 22 C 1.37875 * 119.99518 * 179.97438 * 20 19 18 23 23 N 1.31519 * 120.00606 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99959 * 179.97438 * 22 20 19 25 25 H 1.48494 * 109.47308 * 90.00198 * 24 22 20 26 26 H 1.48500 * 109.47469 * 210.00098 * 24 22 20 27 27 H 1.48504 * 109.47047 * 329.99981 * 24 22 20 28 28 H 1.09001 * 109.46953 * 269.68381 * 1 2 3 29 29 H 1.09000 * 109.47318 * 29.67979 * 1 2 3 30 30 H 1.09000 * 109.47161 * 149.68610 * 1 2 3 31 31 H 1.08001 * 126.06674 * 0.03004 * 3 2 1 32 32 H 0.96995 * 119.99530 * 180.27892 * 5 4 3 33 33 H 0.97005 * 119.99816 * 0.02562 * 8 6 5 34 34 H 1.09013 * 109.46927 * 300.00308 * 9 8 6 35 35 H 1.08998 * 109.47045 * 59.99894 * 9 8 6 36 36 H 1.09002 * 109.72309 * 297.57639 * 12 10 9 37 37 H 1.09001 * 109.72114 * 58.24689 * 12 10 9 38 38 H 1.09003 * 109.47284 * 166.81814 * 13 12 10 39 39 H 1.09003 * 109.47398 * 286.83169 * 13 12 10 40 40 H 1.08003 * 118.74994 * 162.52159 * 14 13 12 41 41 H 1.07996 * 118.32939 * 180.42881 * 15 14 13 42 42 H 1.09004 * 109.46742 * 210.00004 * 19 18 2 43 43 H 1.08993 * 109.46661 * 329.99390 * 19 18 2 44 44 H 0.97000 * 120.00161 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3033 1.0932 0.0000 4 6 3.6371 0.6545 0.0027 5 7 4.7738 1.4751 0.0070 6 6 4.6370 2.8159 0.0146 7 8 3.5278 3.3138 0.0180 8 7 5.7298 3.6047 0.0182 9 6 5.5812 5.0621 0.0270 10 6 6.9645 5.7158 0.0290 11 1 7.5530 5.3282 0.8605 12 6 6.8175 7.2379 0.1640 13 6 8.2214 7.8505 0.2149 14 6 9.0670 7.2563 -0.8782 15 6 8.7463 6.1466 -1.4894 16 8 7.6311 5.4381 -1.2058 17 7 3.6336 -0.6575 -0.0042 18 7 2.3017 -1.0909 -0.0060 19 6 1.8500 -2.4846 -0.0132 20 6 1.6947 -2.9550 -1.4364 21 1 1.9103 -2.2830 -2.2538 22 6 1.2772 -4.2433 -1.6949 23 7 1.0141 -5.0616 -0.6994 24 14 1.0839 -4.8263 -3.4590 25 1 2.3647 -5.4117 -3.9301 26 1 0.0152 -5.8551 -3.5262 27 1 0.7181 -3.6754 -4.3234 28 1 -0.3633 -0.0057 1.0277 29 1 -0.3634 0.8928 -0.5088 30 1 -0.3633 -0.8872 -0.5187 31 1 1.9721 2.1211 0.0005 32 1 5.6587 1.0778 0.0045 33 1 6.6147 3.2074 0.0151 34 1 5.0323 5.3767 -0.8608 35 1 5.0340 5.3662 0.9192 36 1 6.2748 7.6327 -0.6949 37 1 6.2788 7.4755 1.0813 38 1 8.1523 8.9294 0.0753 39 1 8.6759 7.6376 1.1825 40 1 9.9735 7.7663 -1.1691 41 1 9.4063 5.7767 -2.2600 42 1 2.5849 -3.1073 0.4972 43 1 0.8917 -2.5585 0.5007 44 1 0.7201 -5.9679 -0.8814 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000782059462.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:23:24 Heat of formation + Delta-G solvation = 1.237944 kcal Electronic energy + Delta-G solvation = -25871.414400 eV Core-core repulsion = 22018.270628 eV Total energy + Delta-G solvation = -3853.143772 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.30123 -41.30611 -40.65641 -36.60055 -35.97266 -35.29185 -34.84914 -33.23345 -32.67330 -32.28182 -28.86510 -28.08495 -27.81705 -25.27735 -24.71354 -23.81719 -22.71356 -21.37175 -21.10764 -19.93125 -19.11538 -18.76349 -17.85453 -17.67027 -17.28188 -17.05383 -16.65970 -16.29815 -16.15059 -15.78752 -15.63773 -15.02965 -14.91226 -14.59766 -14.43269 -14.25779 -13.84227 -13.78735 -13.69368 -13.55902 -13.47522 -13.21944 -13.11421 -12.82096 -12.68358 -12.24713 -12.08829 -11.81946 -11.72039 -11.58977 -11.44014 -11.34023 -11.11693 -10.72860 -10.24812 -9.54537 -9.31692 -9.06362 -8.31523 -6.49313 1.03221 1.11044 1.38305 1.39145 1.42032 1.50787 1.67544 2.08414 2.35443 2.38610 2.43870 2.97579 3.11118 3.59430 3.78504 3.88609 3.96432 4.13029 4.17802 4.29019 4.47124 4.49104 4.54239 4.65905 4.78478 4.79001 4.80589 4.86954 4.89047 4.99228 5.02963 5.03710 5.14104 5.20299 5.22874 5.40895 5.43922 5.54927 5.65465 5.82295 5.85492 5.98727 6.28973 6.62819 6.66306 6.74329 7.13628 7.21541 7.41365 8.74013 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.025374 B = 0.002127 C = 0.002035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.206858 B =13158.560641 C =13755.933721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.087 3.913 3 C -0.298 4.298 4 C 0.292 3.708 5 N -0.636 5.636 6 C 0.712 3.288 7 O -0.600 6.600 8 N -0.720 5.720 9 C 0.148 3.852 10 C 0.082 3.918 11 H 0.093 0.907 12 C -0.151 4.151 13 C -0.084 4.084 14 C -0.285 4.285 15 C 0.038 3.962 16 O -0.337 6.337 17 N -0.361 5.361 18 N -0.344 5.344 19 C 0.276 3.724 20 C -0.552 4.552 21 H 0.049 0.951 22 C 0.022 3.978 23 N -0.917 5.917 24 Si 0.971 3.029 25 H -0.275 1.275 26 H -0.270 1.270 27 H -0.270 1.270 28 H 0.093 0.907 29 H 0.101 0.899 30 H 0.067 0.933 31 H 0.167 0.833 32 H 0.421 0.579 33 H 0.414 0.586 34 H 0.065 0.935 35 H 0.097 0.903 36 H 0.072 0.928 37 H 0.102 0.898 38 H 0.086 0.914 39 H 0.079 0.921 40 H 0.131 0.869 41 H 0.170 0.830 42 H 0.025 0.975 43 H 0.053 0.947 44 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.678 25.135 2.883 28.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.043 4.043 3 C -0.329 4.329 4 C 0.037 3.963 5 N -0.288 5.288 6 C 0.412 3.588 7 O -0.478 6.478 8 N -0.377 5.377 9 C 0.024 3.976 10 C 0.025 3.975 11 H 0.111 0.889 12 C -0.189 4.189 13 C -0.121 4.121 14 C -0.305 4.305 15 C -0.024 4.024 16 O -0.252 6.252 17 N -0.191 5.191 18 N -0.126 5.126 19 C 0.157 3.843 20 C -0.591 4.591 21 H 0.067 0.933 22 C -0.179 4.179 23 N -0.556 5.556 24 Si 0.795 3.205 25 H -0.200 1.200 26 H -0.195 1.195 27 H -0.195 1.195 28 H 0.112 0.888 29 H 0.120 0.880 30 H 0.086 0.914 31 H 0.184 0.816 32 H 0.258 0.742 33 H 0.250 0.750 34 H 0.083 0.917 35 H 0.115 0.885 36 H 0.091 0.909 37 H 0.120 0.880 38 H 0.105 0.895 39 H 0.098 0.902 40 H 0.149 0.851 41 H 0.187 0.813 42 H 0.043 0.957 43 H 0.070 0.930 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 13.230 24.135 2.831 27.668 hybrid contribution 0.579 -0.281 -0.715 0.963 sum 13.809 23.854 2.116 27.644 Atomic orbital electron populations 1.20497 0.85366 1.04336 1.04113 1.21745 0.96667 0.86426 0.99476 1.21408 0.89947 0.99896 1.21644 1.18947 0.88061 0.88902 1.00392 1.41370 1.07095 1.03822 1.76486 1.15747 0.85208 0.80101 0.77776 1.90841 1.25168 1.73916 1.57882 1.44796 1.07269 1.06493 1.79141 1.21385 0.95554 0.77012 1.03600 1.22766 0.92225 0.96431 0.86031 0.88924 1.22216 0.98799 0.93172 1.04688 1.20412 0.93100 1.00776 0.97808 1.22778 1.04378 0.98885 1.04414 1.22339 0.87765 0.92485 0.99785 1.85957 1.38874 1.60938 1.39454 1.77162 1.00099 1.09738 1.32120 1.48764 1.01645 1.07469 1.54737 1.19240 0.94921 0.72444 0.97724 1.21439 1.47474 0.98339 0.91805 0.93315 1.25729 0.93994 0.95908 1.02232 1.70001 1.45117 1.07381 1.33065 0.85364 0.78263 0.78177 0.78733 1.20012 1.19477 1.19488 0.88836 0.88014 0.91434 0.81614 0.74184 0.74968 0.91681 0.88452 0.90935 0.87993 0.89544 0.90219 0.85144 0.81282 0.95734 0.92967 0.91741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.90 9.89 71.24 0.70 -2.20 16 2 C 0.09 3.77 6.93 41.39 0.29 4.05 16 3 C -0.30 -12.58 9.52 22.11 0.21 -12.37 16 4 C 0.29 12.23 8.11 133.31 1.08 13.31 16 5 N -0.64 -20.00 5.46 -321.23 -1.75 -21.76 16 6 C 0.71 20.87 8.53 179.05 1.53 22.40 16 7 O -0.60 -21.77 13.47 -3.99 -0.05 -21.82 16 8 N -0.72 -13.95 5.53 -478.54 -2.64 -16.59 16 9 C 0.15 2.40 5.36 86.38 0.46 2.87 16 10 C 0.08 0.99 2.88 30.76 0.09 1.07 16 11 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 12 C -0.15 -1.44 5.54 30.85 0.17 -1.27 16 13 C -0.08 -0.73 6.23 29.85 0.19 -0.55 16 14 C -0.29 -3.03 9.97 25.89 0.26 -2.78 16 15 C 0.04 0.48 10.88 68.11 0.74 1.22 16 16 O -0.34 -5.31 10.02 -84.12 -0.84 -6.16 16 17 N -0.36 -17.29 12.59 -54.43 -0.69 -17.98 16 18 N -0.34 -16.97 3.59 -338.44 -1.22 -18.19 16 19 C 0.28 14.78 5.81 85.63 0.50 15.27 16 20 C -0.55 -31.36 9.39 25.60 0.24 -31.12 16 21 H 0.05 2.87 7.81 -2.91 -0.02 2.84 16 22 C 0.02 1.23 5.46 84.65 0.46 1.70 16 23 N -0.92 -52.15 13.29 21.45 0.28 -51.86 16 24 Si 0.97 43.53 29.54 68.60 2.03 45.55 16 25 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 26 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 27 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 28 H 0.09 2.75 8.14 -2.39 -0.02 2.73 16 29 H 0.10 2.90 8.14 -2.39 -0.02 2.88 16 30 H 0.07 2.51 7.71 -2.39 -0.02 2.49 16 31 H 0.17 6.81 5.91 -2.91 -0.02 6.79 16 32 H 0.42 10.48 8.84 -92.71 -0.82 9.66 16 33 H 0.41 5.87 8.49 -92.70 -0.79 5.08 16 34 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 35 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 38 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 39 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 40 H 0.13 1.07 8.06 -2.91 -0.02 1.04 16 41 H 0.17 1.47 8.06 -2.91 -0.02 1.45 16 42 H 0.02 1.42 8.14 -2.39 -0.02 1.40 16 43 H 0.05 2.76 7.65 -2.39 -0.02 2.74 16 44 H 0.27 14.49 8.31 -92.71 -0.77 13.72 16 Total: -1.00 -73.08 371.55 1.46 -71.62 By element: Atomic # 1 Polarization: 26.14 SS G_CDS: -0.57 Total: 25.56 kcal Atomic # 6 Polarization: 4.70 SS G_CDS: 6.92 Total: 11.62 kcal Atomic # 7 Polarization: -120.36 SS G_CDS: -6.01 Total: -126.38 kcal Atomic # 8 Polarization: -27.08 SS G_CDS: -0.90 Total: -27.98 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.55 kcal Total: -73.08 1.46 -71.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782059462.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.860 kcal (2) G-P(sol) polarization free energy of solvation -73.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.622 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds