Wall clock time and date at job start Tue Mar 31 2020 12:40:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 112.84589 * 2 1 4 4 C 1.53784 * 113.61435 * 131.18750 * 2 1 3 5 5 C 1.53780 * 87.08001 * 89.11979 * 4 2 1 6 6 C 1.52996 * 113.61383 * 139.97940 * 5 4 2 7 7 N 1.46507 * 109.47159 * 176.53017 * 6 5 4 8 8 C 1.34769 * 120.00057 * 180.02562 * 7 6 5 9 9 O 1.21363 * 120.00278 * 359.97438 * 8 7 6 10 10 C 1.49315 * 119.99908 * 180.02562 * 8 7 6 11 11 O 1.21403 * 119.99839 * 359.97438 * 10 8 7 12 12 N 1.34777 * 119.99715 * 180.27494 * 10 8 7 13 13 C 1.40290 * 119.99707 * 179.72627 * 12 10 8 14 14 C 1.40724 * 126.10136 * 359.68012 * 13 12 10 15 15 N 1.30879 * 108.37752 * 179.82042 * 14 13 12 16 16 N 1.40060 * 108.43476 * 0.44399 * 15 14 13 17 17 C 1.37298 * 126.05775 * 179.71586 * 16 15 14 18 18 H 1.07999 * 120.00047 * 180.02562 * 17 16 15 19 19 C 1.39005 * 119.99629 * 0.02562 * 17 16 15 20 20 N 1.31277 * 120.00165 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 119.99668 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.47452 * 90.00486 * 21 19 17 23 23 H 1.48505 * 109.46764 * 210.00070 * 21 19 17 24 24 H 1.48500 * 109.47244 * 329.99852 * 21 19 17 25 25 C 1.35790 * 126.09984 * 179.97438 * 13 12 10 26 26 C 1.53786 * 87.17314 * 25.39008 * 5 4 2 27 27 H 1.08998 * 109.47334 * 288.80473 * 1 2 3 28 28 H 1.08989 * 109.47128 * 48.81306 * 1 2 3 29 29 H 1.09003 * 109.46417 * 168.81065 * 1 2 3 30 30 H 1.09001 * 109.46794 * 191.19858 * 3 2 1 31 31 H 1.09003 * 109.46690 * 311.18723 * 3 2 1 32 32 H 1.08995 * 109.47583 * 71.18900 * 3 2 1 33 33 H 1.09006 * 113.61641 * 334.56968 * 4 2 1 34 34 H 1.09002 * 113.61342 * 203.66550 * 4 2 1 35 35 H 1.08999 * 113.61253 * 270.80011 * 5 4 2 36 36 H 1.08994 * 109.47190 * 56.53287 * 6 5 4 37 37 H 1.08998 * 109.47408 * 296.52975 * 6 5 4 38 38 H 0.97000 * 119.99595 * 0.02562 * 7 6 5 39 39 H 0.97001 * 120.00485 * 359.71506 * 12 10 8 40 40 H 1.08003 * 125.81096 * 359.97438 * 14 13 12 41 41 H 0.97001 * 120.00185 * 179.97438 * 20 19 17 42 42 H 1.07995 * 126.25130 * 359.97332 * 25 13 12 43 43 H 1.08995 * 113.61322 * 89.15753 * 26 5 4 44 44 H 1.09000 * 113.61058 * 220.06094 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1241 1.4100 0.0000 4 6 2.1461 -0.9279 1.0604 5 6 2.0931 -2.0425 0.0023 6 6 3.3266 -2.9477 0.0032 7 7 3.1453 -4.0212 -0.9771 8 6 4.1108 -4.9453 -1.1507 9 8 5.1306 -4.8879 -0.4953 10 6 3.9263 -6.0391 -2.1502 11 8 2.9063 -6.0963 -2.8061 12 7 4.8895 -6.9664 -2.3198 13 6 4.7136 -7.9974 -3.2548 14 6 3.5865 -8.1895 -4.0752 15 7 3.7904 -9.2497 -4.8150 16 7 5.0453 -9.7809 -4.4914 17 6 5.6179 -10.8979 -5.0477 18 1 6.5955 -11.2222 -4.7230 19 6 4.9392 -11.6114 -6.0287 20 7 3.7510 -11.2169 -6.4238 21 14 5.7179 -13.1317 -6.7851 22 1 5.3316 -14.3297 -5.9974 23 1 5.2451 -13.2858 -8.1844 24 1 7.1959 -12.9880 -6.7749 25 6 5.5984 -8.9913 -3.5257 26 6 2.1449 -0.9318 -1.0601 27 1 -0.3634 0.3312 0.9728 28 1 -0.3633 0.6767 -0.7733 29 1 -0.3632 -1.0082 -0.1994 30 1 3.1942 1.3534 -0.1996 31 1 1.6414 2.0075 -0.7734 32 1 1.9598 1.8735 0.9727 33 1 1.4945 -1.1066 1.9159 34 1 3.1591 -0.6484 1.3497 35 1 1.1575 -2.6019 0.0038 36 1 3.4592 -3.3799 0.9950 37 1 4.2075 -2.3616 -0.2585 38 1 2.3303 -4.0669 -1.5011 39 1 5.7044 -6.9209 -1.7956 40 1 2.7045 -7.5665 -4.0932 41 1 3.2776 -11.7146 -7.1086 42 1 6.5635 -9.1312 -3.0617 43 1 3.1576 -0.6533 -1.3515 44 1 1.4925 -1.1137 -1.9141 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000782167541.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:05 Heat of formation + Delta-G solvation = 24.171851 kcal Electronic energy + Delta-G solvation = -25707.428481 eV Core-core repulsion = 21855.279198 eV Total energy + Delta-G solvation = -3852.149283 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.63744 -40.08683 -39.36081 -37.87190 -35.24379 -34.15909 -33.15829 -31.40416 -30.32201 -28.16353 -27.81437 -27.11909 -26.10018 -25.16413 -23.50101 -21.29012 -21.03015 -20.22874 -19.45665 -18.61885 -18.12992 -17.43068 -16.46238 -15.96927 -15.62360 -15.48456 -15.20273 -15.04881 -14.66096 -14.44385 -14.17218 -13.97272 -13.62532 -13.47677 -13.16145 -13.11497 -12.98389 -12.71648 -12.30358 -12.20558 -11.77179 -11.73818 -11.57741 -11.33222 -11.29165 -11.17558 -10.92865 -10.86186 -10.55700 -10.42439 -10.39847 -10.28764 -9.26054 -9.22479 -9.11246 -8.87446 -8.12834 -6.77694 -6.60446 -4.27726 1.67379 2.61870 2.93378 3.03829 3.08678 3.33837 3.72238 3.75332 3.94573 4.10821 4.22644 4.25340 4.37283 4.40629 4.62575 4.76401 4.96129 4.98184 5.01278 5.03642 5.22497 5.25867 5.38318 5.41910 5.44277 5.53450 5.54687 5.57475 5.67983 5.78972 5.81904 6.04586 6.13156 6.20275 6.25572 6.36269 6.76037 6.88891 6.92475 7.16371 7.23870 7.76943 7.86856 8.11240 8.18664 8.49268 8.69820 9.31322 9.59961 10.35377 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.039400 B = 0.001946 C = 0.001884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.486101 B =14382.801453 C =14854.901147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.091 4.091 3 C -0.136 4.136 4 C -0.121 4.121 5 C -0.125 4.125 6 C 0.129 3.871 7 N -0.703 5.703 8 C 0.514 3.486 9 O -0.530 6.530 10 C 0.483 3.517 11 O -0.524 6.524 12 N -0.584 5.584 13 C -0.069 4.069 14 C -0.027 4.027 15 N -0.261 5.261 16 N -0.139 5.139 17 C -0.322 4.322 18 H 0.118 0.882 19 C 0.046 3.954 20 N -0.768 5.768 21 Si 0.936 3.064 22 H -0.270 1.270 23 H -0.276 1.276 24 H -0.263 1.263 25 C -0.077 4.077 26 C -0.128 4.128 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.070 0.930 34 H 0.085 0.915 35 H 0.099 0.901 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.413 0.587 39 H 0.409 0.591 40 H 0.178 0.822 41 H 0.276 0.724 42 H 0.149 0.851 43 H 0.084 0.916 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.982 19.068 12.217 22.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.091 4.091 3 C -0.193 4.193 4 C -0.158 4.158 5 C -0.144 4.144 6 C 0.006 3.994 7 N -0.356 5.356 8 C 0.295 3.705 9 O -0.406 6.406 10 C 0.264 3.736 11 O -0.401 6.401 12 N -0.226 5.226 13 C -0.175 4.175 14 C -0.202 4.202 15 N -0.091 5.091 16 N 0.095 4.905 17 C -0.454 4.454 18 H 0.136 0.864 19 C -0.171 4.171 20 N -0.394 5.394 21 Si 0.760 3.240 22 H -0.195 1.195 23 H -0.200 1.200 24 H -0.187 1.187 25 C -0.229 4.229 26 C -0.166 4.166 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.089 0.911 34 H 0.103 0.897 35 H 0.117 0.883 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.250 0.750 39 H 0.244 0.756 40 H 0.194 0.806 41 H 0.086 0.914 42 H 0.167 0.833 43 H 0.103 0.897 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.637 18.251 11.153 21.696 hybrid contribution 0.786 -0.111 0.407 0.892 sum -2.851 18.140 11.561 21.699 Atomic orbital electron populations 1.21606 0.93099 1.02107 1.01835 1.21812 0.95632 0.94557 0.97088 1.21728 1.00549 0.95389 1.01634 1.23028 1.01552 0.94889 0.96378 1.22790 0.98373 0.94857 0.98373 1.21458 0.97817 0.87738 0.92428 1.45716 1.21239 1.27333 1.41352 1.20292 0.83611 0.83028 0.83557 1.90729 1.27772 1.74896 1.47251 1.19671 0.84865 0.83802 0.85252 1.90652 1.27787 1.74541 1.47131 1.42150 1.19324 1.23932 1.37214 1.17260 0.99878 0.96370 1.04019 1.24147 0.99193 0.98959 0.97948 1.78260 0.97398 1.10885 1.22588 1.44565 1.10143 1.15614 1.20211 1.19925 1.03316 1.01491 1.20682 0.86432 1.25667 0.95492 0.99537 0.96448 1.70205 1.10176 1.35644 1.23375 0.85803 0.79594 0.80079 0.78553 1.19532 1.20044 1.18739 1.21308 1.00870 0.97781 1.02914 1.23231 1.01532 0.95212 0.96580 0.92412 0.92354 0.92255 0.92484 0.92636 0.92618 0.91105 0.89658 0.88316 0.91042 0.91007 0.75028 0.75595 0.80562 0.91356 0.83344 0.89741 0.91078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.75 9.07 37.16 0.34 -0.41 16 2 C -0.09 -0.56 1.39 -153.60 -0.21 -0.77 16 3 C -0.14 -0.78 9.20 37.16 0.34 -0.44 16 4 C -0.12 -0.74 6.79 -25.92 -0.18 -0.92 16 5 C -0.13 -0.89 3.40 -89.81 -0.31 -1.19 16 6 C 0.13 1.20 5.50 -4.04 -0.02 1.18 16 7 N -0.70 -8.30 5.55 -60.78 -0.34 -8.64 16 8 C 0.51 7.85 7.88 -11.65 -0.09 7.76 16 9 O -0.53 -8.88 16.47 5.49 0.09 -8.79 16 10 C 0.48 8.81 7.85 -11.65 -0.09 8.72 16 11 O -0.52 -10.61 13.62 5.45 0.07 -10.54 16 12 N -0.58 -11.12 5.45 -10.45 -0.06 -11.18 16 13 C -0.07 -1.61 6.90 -83.92 -0.58 -2.19 16 14 C -0.03 -0.70 10.85 -17.02 -0.18 -0.88 16 15 N -0.26 -7.50 10.39 30.81 0.32 -7.18 16 16 N -0.14 -3.78 3.73 -11.40 -0.04 -3.82 16 17 C -0.32 -8.44 10.25 -14.82 -0.15 -8.59 16 18 H 0.12 2.75 7.83 -52.49 -0.41 2.34 16 19 C 0.05 1.18 5.50 -17.50 -0.10 1.08 16 20 N -0.77 -21.20 11.81 55.50 0.66 -20.55 16 21 Si 0.94 18.72 29.55 -169.99 -5.02 13.70 16 22 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 23 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 24 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 25 C -0.08 -1.83 11.50 -16.38 -0.19 -2.01 16 26 C -0.13 -0.90 6.76 -25.83 -0.17 -1.07 16 27 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 28 H 0.06 0.33 8.14 -51.94 -0.42 -0.10 16 29 H 0.06 0.35 7.34 -51.93 -0.38 -0.03 16 30 H 0.06 0.33 7.96 -51.93 -0.41 -0.09 16 31 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 33 H 0.07 0.41 8.10 -51.93 -0.42 -0.01 16 34 H 0.08 0.51 8.06 -51.93 -0.42 0.09 16 35 H 0.10 0.68 7.66 -51.93 -0.40 0.28 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.69 7.87 -51.93 -0.41 0.28 16 38 H 0.41 4.54 7.94 -40.82 -0.32 4.22 16 39 H 0.41 6.74 8.29 -40.82 -0.34 6.40 16 40 H 0.18 4.45 5.92 -52.48 -0.31 4.14 16 41 H 0.28 6.95 8.31 -40.82 -0.34 6.61 16 42 H 0.15 2.94 8.06 -52.49 -0.42 2.52 16 43 H 0.08 0.62 7.75 -51.93 -0.40 0.21 16 44 H 0.07 0.52 8.10 -51.93 -0.42 0.10 16 LS Contribution 370.62 15.07 5.59 5.59 Total: -1.00 -32.24 370.62 -6.65 -38.89 By element: Atomic # 1 Polarization: 18.57 SS G_CDS: -6.32 Total: 12.25 kcal Atomic # 6 Polarization: 1.86 SS G_CDS: -1.60 Total: 0.27 kcal Atomic # 7 Polarization: -51.90 SS G_CDS: 0.54 Total: -51.36 kcal Atomic # 8 Polarization: -19.49 SS G_CDS: 0.16 Total: -19.33 kcal Atomic # 14 Polarization: 18.72 SS G_CDS: -5.02 Total: 13.70 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.24 -6.65 -38.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782167541.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.062 kcal (2) G-P(sol) polarization free energy of solvation -32.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds