Wall clock time and date at job start Tue Mar 31 2020 12:40:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 112.84589 * 2 1 4 4 C 1.53784 * 113.61435 * 131.18750 * 2 1 3 5 5 C 1.53780 * 87.08001 * 89.11979 * 4 2 1 6 6 C 1.52996 * 113.61383 * 139.97940 * 5 4 2 7 7 N 1.46507 * 109.47159 * 176.53017 * 6 5 4 8 8 C 1.34769 * 120.00057 * 180.02562 * 7 6 5 9 9 O 1.21363 * 120.00278 * 359.97438 * 8 7 6 10 10 C 1.49315 * 119.99908 * 180.02562 * 8 7 6 11 11 O 1.21403 * 119.99839 * 359.97438 * 10 8 7 12 12 N 1.34777 * 119.99715 * 180.27494 * 10 8 7 13 13 C 1.40290 * 119.99707 * 179.72627 * 12 10 8 14 14 C 1.40724 * 126.10136 * 359.68012 * 13 12 10 15 15 N 1.30879 * 108.37752 * 179.82042 * 14 13 12 16 16 N 1.40060 * 108.43476 * 0.44399 * 15 14 13 17 17 C 1.37298 * 126.05775 * 179.71586 * 16 15 14 18 18 H 1.07999 * 120.00047 * 180.02562 * 17 16 15 19 19 C 1.39005 * 119.99629 * 0.02562 * 17 16 15 20 20 N 1.31277 * 120.00165 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 119.99668 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.47452 * 90.00486 * 21 19 17 23 23 H 1.48505 * 109.46764 * 210.00070 * 21 19 17 24 24 H 1.48500 * 109.47244 * 329.99852 * 21 19 17 25 25 C 1.35790 * 126.09984 * 179.97438 * 13 12 10 26 26 C 1.53786 * 87.17314 * 25.39008 * 5 4 2 27 27 H 1.08998 * 109.47334 * 288.80473 * 1 2 3 28 28 H 1.08989 * 109.47128 * 48.81306 * 1 2 3 29 29 H 1.09003 * 109.46417 * 168.81065 * 1 2 3 30 30 H 1.09001 * 109.46794 * 191.19858 * 3 2 1 31 31 H 1.09003 * 109.46690 * 311.18723 * 3 2 1 32 32 H 1.08995 * 109.47583 * 71.18900 * 3 2 1 33 33 H 1.09006 * 113.61641 * 334.56968 * 4 2 1 34 34 H 1.09002 * 113.61342 * 203.66550 * 4 2 1 35 35 H 1.08999 * 113.61253 * 270.80011 * 5 4 2 36 36 H 1.08994 * 109.47190 * 56.53287 * 6 5 4 37 37 H 1.08998 * 109.47408 * 296.52975 * 6 5 4 38 38 H 0.97000 * 119.99595 * 0.02562 * 7 6 5 39 39 H 0.97001 * 120.00485 * 359.71506 * 12 10 8 40 40 H 1.08003 * 125.81096 * 359.97438 * 14 13 12 41 41 H 0.97001 * 120.00185 * 179.97438 * 20 19 17 42 42 H 1.07995 * 126.25130 * 359.97332 * 25 13 12 43 43 H 1.08995 * 113.61322 * 89.15753 * 26 5 4 44 44 H 1.09000 * 113.61058 * 220.06094 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1241 1.4100 0.0000 4 6 2.1461 -0.9279 1.0604 5 6 2.0931 -2.0425 0.0023 6 6 3.3266 -2.9477 0.0032 7 7 3.1453 -4.0212 -0.9771 8 6 4.1108 -4.9453 -1.1507 9 8 5.1306 -4.8879 -0.4953 10 6 3.9263 -6.0391 -2.1502 11 8 2.9063 -6.0963 -2.8061 12 7 4.8895 -6.9664 -2.3198 13 6 4.7136 -7.9974 -3.2548 14 6 3.5865 -8.1895 -4.0752 15 7 3.7904 -9.2497 -4.8150 16 7 5.0453 -9.7809 -4.4914 17 6 5.6179 -10.8979 -5.0477 18 1 6.5955 -11.2222 -4.7230 19 6 4.9392 -11.6114 -6.0287 20 7 3.7510 -11.2169 -6.4238 21 14 5.7179 -13.1317 -6.7851 22 1 5.3316 -14.3297 -5.9974 23 1 5.2451 -13.2858 -8.1844 24 1 7.1959 -12.9880 -6.7749 25 6 5.5984 -8.9913 -3.5257 26 6 2.1449 -0.9318 -1.0601 27 1 -0.3634 0.3312 0.9728 28 1 -0.3633 0.6767 -0.7733 29 1 -0.3632 -1.0082 -0.1994 30 1 3.1942 1.3534 -0.1996 31 1 1.6414 2.0075 -0.7734 32 1 1.9598 1.8735 0.9727 33 1 1.4945 -1.1066 1.9159 34 1 3.1591 -0.6484 1.3497 35 1 1.1575 -2.6019 0.0038 36 1 3.4592 -3.3799 0.9950 37 1 4.2075 -2.3616 -0.2585 38 1 2.3303 -4.0669 -1.5011 39 1 5.7044 -6.9209 -1.7956 40 1 2.7045 -7.5665 -4.0932 41 1 3.2776 -11.7146 -7.1086 42 1 6.5635 -9.1312 -3.0617 43 1 3.1576 -0.6533 -1.3515 44 1 1.4925 -1.1137 -1.9141 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000782167541.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:04 Heat of formation + Delta-G solvation = 2.338989 kcal Electronic energy + Delta-G solvation = -25708.375225 eV Core-core repulsion = 21855.279198 eV Total energy + Delta-G solvation = -3853.096027 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.03576 -41.27416 -40.60298 -39.33060 -36.49639 -35.68530 -34.92339 -32.30607 -32.07387 -29.92618 -28.30625 -28.11643 -26.92583 -26.61876 -24.89222 -22.91020 -22.00761 -21.68270 -21.18712 -19.60554 -19.17970 -19.06265 -17.68907 -17.45257 -17.08726 -16.76869 -16.64313 -16.06624 -15.73518 -15.56832 -15.25382 -15.17429 -14.87020 -14.85390 -14.63817 -14.27907 -13.64463 -13.51724 -13.51232 -13.38302 -12.96669 -12.91005 -12.86657 -12.67954 -12.52159 -12.27597 -12.08623 -11.97084 -11.82131 -11.45815 -11.06979 -11.00551 -10.93291 -10.87360 -10.53752 -10.26666 -10.14323 -8.62532 -8.49024 -6.26806 0.28990 1.29471 1.31724 1.42543 1.58799 1.72605 2.04425 2.12120 2.53523 2.59004 2.94042 3.07528 3.50972 3.58855 3.66759 3.69933 3.83280 4.19709 4.38986 4.39573 4.44323 4.52191 4.63773 4.77763 4.81366 4.85433 4.93482 4.95655 4.98061 4.98462 5.02977 5.06191 5.15559 5.21669 5.23352 5.29950 5.30597 5.33614 5.56607 5.66705 5.90150 6.01043 6.25001 6.48831 6.67271 6.80878 7.07376 7.41064 7.62569 8.50217 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.039400 B = 0.001946 C = 0.001884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.486101 B =14382.801453 C =14854.901147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.089 4.089 3 C -0.135 4.135 4 C -0.115 4.115 5 C -0.120 4.120 6 C 0.128 3.872 7 N -0.685 5.685 8 C 0.523 3.477 9 O -0.543 6.543 10 C 0.485 3.515 11 O -0.544 6.544 12 N -0.583 5.583 13 C -0.057 4.057 14 C -0.048 4.048 15 N -0.308 5.308 16 N -0.163 5.163 17 C -0.353 4.353 18 H 0.142 0.858 19 C -0.005 4.005 20 N -0.821 5.821 21 Si 1.020 2.980 22 H -0.264 1.264 23 H -0.276 1.276 24 H -0.245 1.245 25 C -0.075 4.075 26 C -0.132 4.132 27 H 0.063 0.937 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.061 0.939 33 H 0.077 0.923 34 H 0.089 0.911 35 H 0.103 0.897 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.419 0.581 39 H 0.423 0.577 40 H 0.176 0.824 41 H 0.278 0.722 42 H 0.188 0.812 43 H 0.081 0.919 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.857 19.715 13.548 23.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.089 4.089 3 C -0.193 4.193 4 C -0.153 4.153 5 C -0.139 4.139 6 C 0.006 3.994 7 N -0.338 5.338 8 C 0.303 3.697 9 O -0.421 6.421 10 C 0.267 3.733 11 O -0.422 6.422 12 N -0.228 5.228 13 C -0.163 4.163 14 C -0.224 4.224 15 N -0.139 5.139 16 N 0.069 4.931 17 C -0.484 4.484 18 H 0.159 0.841 19 C -0.218 4.218 20 N -0.449 5.449 21 Si 0.839 3.161 22 H -0.189 1.189 23 H -0.201 1.201 24 H -0.168 1.168 25 C -0.226 4.226 26 C -0.169 4.169 27 H 0.082 0.918 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.096 0.904 34 H 0.107 0.893 35 H 0.121 0.879 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.256 0.744 39 H 0.261 0.739 40 H 0.193 0.807 41 H 0.088 0.912 42 H 0.205 0.795 43 H 0.100 0.900 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -2.514 18.953 12.526 22.857 hybrid contribution 0.382 -0.118 0.109 0.415 sum -2.131 18.835 12.635 22.780 Atomic orbital electron populations 1.21614 0.92794 1.02042 1.02228 1.21812 0.95862 0.94692 0.96559 1.21724 1.00447 0.95113 1.01982 1.23026 1.01983 0.94005 0.96296 1.22775 0.97424 0.94586 0.99111 1.21670 0.99061 0.87077 0.91608 1.45764 1.20334 1.26635 1.41063 1.19654 0.84223 0.82886 0.82952 1.90734 1.28428 1.75244 1.47692 1.20319 0.84012 0.83905 0.85051 1.90643 1.28605 1.75027 1.47908 1.42092 1.20410 1.23352 1.36896 1.17304 0.98558 0.96874 1.03607 1.24253 1.00255 0.98951 0.98915 1.78157 0.99167 1.12277 1.24343 1.44846 1.10111 1.16654 1.21520 1.20661 1.04536 1.01776 1.21468 0.84077 1.26889 0.95682 1.02792 0.96389 1.70373 1.12246 1.37703 1.24541 0.84581 0.79324 0.75159 0.77082 1.18870 1.20115 1.16787 1.22005 1.02058 0.96807 1.01694 1.23255 1.01423 0.95571 0.96667 0.91792 0.92337 0.92456 0.92572 0.92648 0.92046 0.90393 0.89263 0.87877 0.90774 0.90883 0.74425 0.73916 0.80734 0.91230 0.79492 0.90024 0.91494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.29 9.07 71.98 0.65 -0.63 16 2 C -0.09 -0.94 1.39 -51.59 -0.07 -1.01 16 3 C -0.14 -1.33 9.20 71.98 0.66 -0.67 16 4 C -0.12 -1.17 6.79 31.12 0.21 -0.95 16 5 C -0.12 -1.48 3.40 -10.27 -0.03 -1.51 16 6 C 0.13 2.14 5.50 86.38 0.47 2.61 16 7 N -0.69 -15.09 5.55 -464.56 -2.58 -17.67 16 8 C 0.52 15.21 7.88 87.23 0.69 15.90 16 9 O -0.54 -17.21 16.47 -3.29 -0.05 -17.26 16 10 C 0.49 17.32 7.85 87.23 0.69 18.01 16 11 O -0.54 -22.01 13.62 -3.41 -0.05 -22.06 16 12 N -0.58 -21.64 5.45 -305.32 -1.66 -23.31 16 13 C -0.06 -2.65 6.90 37.83 0.26 -2.39 16 14 C -0.05 -2.58 10.85 85.44 0.93 -1.66 16 15 N -0.31 -18.31 10.39 -56.43 -0.59 -18.89 16 16 N -0.16 -9.02 3.73 -189.98 -0.71 -9.73 16 17 C -0.35 -18.56 10.25 84.02 0.86 -17.69 16 18 H 0.14 6.42 7.83 -2.91 -0.02 6.40 16 19 C -0.01 -0.28 5.50 84.96 0.47 0.19 16 20 N -0.82 -46.77 11.81 21.66 0.26 -46.52 16 21 Si 1.02 38.13 29.55 68.60 2.03 40.16 16 22 H -0.26 -9.52 7.11 99.48 0.71 -8.81 16 23 H -0.28 -10.22 7.11 99.48 0.71 -9.51 16 24 H -0.24 -8.32 7.11 99.48 0.71 -7.62 16 25 C -0.07 -3.49 11.50 83.41 0.96 -2.53 16 26 C -0.13 -1.65 6.76 31.18 0.21 -1.44 16 27 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.06 0.59 7.34 -2.39 -0.02 0.57 16 30 H 0.06 0.56 7.96 -2.39 -0.02 0.54 16 31 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.08 0.71 8.10 -2.38 -0.02 0.69 16 34 H 0.09 0.86 8.06 -2.39 -0.02 0.84 16 35 H 0.10 1.22 7.66 -2.39 -0.02 1.20 16 36 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.07 1.26 7.87 -2.39 -0.02 1.24 16 38 H 0.42 8.60 7.94 -92.71 -0.74 7.86 16 39 H 0.42 13.24 8.29 -92.71 -0.77 12.47 16 40 H 0.18 9.15 5.92 -2.91 -0.02 9.13 16 41 H 0.28 14.51 8.31 -92.71 -0.77 13.74 16 42 H 0.19 6.97 8.06 -2.91 -0.02 6.94 16 43 H 0.08 1.08 7.75 -2.39 -0.02 1.06 16 44 H 0.07 0.90 8.10 -2.39 -0.02 0.88 16 Total: -1.00 -71.16 370.62 3.13 -68.03 By element: Atomic # 1 Polarization: 41.48 SS G_CDS: -0.47 Total: 41.01 kcal Atomic # 6 Polarization: -0.73 SS G_CDS: 6.95 Total: 6.22 kcal Atomic # 7 Polarization: -110.83 SS G_CDS: -5.28 Total: -116.11 kcal Atomic # 8 Polarization: -39.21 SS G_CDS: -0.10 Total: -39.32 kcal Atomic # 14 Polarization: 38.13 SS G_CDS: 2.03 Total: 40.16 kcal Total: -71.16 3.13 -68.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782167541.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.366 kcal (2) G-P(sol) polarization free energy of solvation -71.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds