Wall clock time and date at job start Tue Mar 31 2020 13:23:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35241 * 126.07259 * 2 1 4 4 C 1.40398 * 107.87159 * 180.15508 * 3 2 1 5 5 N 1.40190 * 125.97722 * 179.82653 * 4 3 2 6 6 C 1.34784 * 119.99939 * 359.71364 * 5 4 3 7 7 O 1.21590 * 119.99467 * 359.97438 * 6 5 4 8 8 N 1.34770 * 120.00193 * 180.02562 * 6 5 4 9 9 C 1.48151 * 127.83726 * 0.02593 * 8 6 5 10 10 C 1.54397 * 104.61301 * 219.56382 * 9 8 6 11 11 H 1.08998 * 117.61075 * 195.02919 * 10 9 8 12 12 C 1.52997 * 118.12359 * 39.46110 * 10 9 8 13 13 C 1.53000 * 60.55346 * 268.45627 * 12 10 9 14 14 C 1.53002 * 119.53941 * 248.23291 * 13 12 10 15 15 O 1.42905 * 109.47298 * 250.70490 * 14 13 12 16 16 C 1.48144 * 127.84040 * 179.97438 * 8 6 5 17 17 N 1.31214 * 108.05543 * 359.56122 * 4 3 2 18 18 N 1.34966 * 126.07288 * 179.67107 * 2 1 3 19 19 C 1.46507 * 125.97632 * 359.97438 * 18 2 1 20 20 C 1.50700 * 109.46759 * 269.99848 * 19 18 2 21 21 H 1.08003 * 120.00380 * 0.02562 * 20 19 18 22 22 C 1.37877 * 120.00090 * 179.97438 * 20 19 18 23 23 N 1.31507 * 120.00550 * 180.02562 * 22 20 19 24 24 Si 1.86797 * 119.99863 * 359.97438 * 22 20 19 25 25 H 1.48498 * 109.47044 * 89.99924 * 24 22 20 26 26 H 1.48500 * 109.47316 * 210.00234 * 24 22 20 27 27 H 1.48508 * 109.47391 * 330.00390 * 24 22 20 28 28 H 1.09003 * 109.47329 * 270.32181 * 1 2 3 29 29 H 1.08996 * 109.46806 * 30.32915 * 1 2 3 30 30 H 1.09007 * 109.46801 * 150.32465 * 1 2 3 31 31 H 1.07999 * 126.06456 * 359.97438 * 3 2 1 32 32 H 0.96997 * 120.00633 * 179.71872 * 5 4 3 33 33 H 1.08992 * 110.40889 * 100.78113 * 9 8 6 34 34 H 1.09000 * 110.40506 * 338.34433 * 9 8 6 35 35 H 1.09000 * 117.44564 * 16.10256 * 12 10 9 36 36 H 1.08999 * 117.44475 * 160.85568 * 12 10 9 37 37 H 1.08998 * 109.47146 * 10.70412 * 14 13 12 38 38 H 1.09001 * 109.46921 * 130.70456 * 14 13 12 39 39 H 0.96699 * 114.00126 * 179.97438 * 15 14 13 40 40 H 1.09004 * 110.40486 * 21.64718 * 16 8 6 41 41 H 1.09003 * 110.50809 * 259.27426 * 16 8 6 42 42 H 1.09001 * 109.47010 * 29.99045 * 19 18 2 43 43 H 1.08996 * 109.47248 * 149.99769 * 19 18 2 44 44 H 0.96998 * 120.00667 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3033 1.0931 0.0000 4 6 3.6370 0.6546 -0.0036 5 7 4.7737 1.4751 -0.0082 6 6 4.6370 2.8159 -0.0154 7 8 3.5277 3.3138 -0.0183 8 7 5.7297 3.6047 -0.0203 9 6 7.1514 3.1880 -0.0195 10 6 7.8501 4.1884 0.9264 11 1 8.9384 4.2391 0.8935 12 6 7.1132 4.6137 2.1980 13 6 6.9470 5.4393 0.9206 14 6 7.5279 6.8532 0.8553 15 8 6.4633 7.8065 0.8646 16 6 5.7818 5.0852 -0.0288 17 7 3.6337 -0.6575 0.0039 18 7 2.3017 -1.0909 0.0063 19 6 1.8501 -2.4846 0.0148 20 6 1.6959 -2.9539 1.4385 21 1 1.9121 -2.2812 2.2553 22 6 1.2777 -4.2417 1.6985 23 7 1.1426 -4.6512 2.9409 24 14 0.9017 -5.4046 0.2858 25 1 2.1337 -6.1449 -0.0873 26 1 -0.1476 -6.3686 0.7041 27 1 0.4199 -4.6247 -0.8826 28 1 -0.3634 0.0058 1.0277 29 1 -0.3633 0.8870 -0.5189 30 1 -0.3633 -0.8929 -0.5088 31 1 1.9720 2.1210 -0.0004 32 1 5.6587 1.0779 -0.0064 33 1 7.5690 3.2594 -1.0238 34 1 7.2493 2.1718 0.3625 35 1 6.2671 4.0045 2.5160 36 1 7.7078 5.0476 3.0019 37 1 8.1734 7.0210 1.7175 38 1 8.1083 6.9656 -0.0604 39 1 6.7588 8.7264 0.8256 40 1 4.8463 5.5006 0.3460 41 1 5.9847 5.4544 -1.0342 42 1 0.8912 -2.5590 -0.4981 43 1 2.5846 -3.1076 -0.4956 44 1 0.8480 -5.5571 3.1238 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000782803201.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:23:07 Heat of formation + Delta-G solvation = 56.593874 kcal Electronic energy + Delta-G solvation = -26522.649597 eV Core-core repulsion = 22671.906239 eV Total energy + Delta-G solvation = -3850.743358 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.11931 -40.44652 -38.81917 -36.79523 -34.83552 -33.83217 -33.14728 -31.44862 -31.05443 -29.28346 -27.47634 -26.56909 -26.41580 -26.11459 -22.67818 -21.69498 -20.87238 -19.71072 -19.52689 -19.19895 -17.81453 -17.47089 -17.09799 -16.53813 -16.28703 -15.56236 -15.32654 -15.10674 -14.63982 -14.48233 -13.99518 -13.86831 -13.68288 -13.53417 -13.19720 -13.14022 -12.59745 -12.39901 -12.29743 -12.25954 -12.08587 -11.84065 -11.60538 -11.54213 -11.20591 -10.80197 -10.78103 -10.55851 -10.37323 -10.05614 -9.94116 -9.89677 -9.70412 -9.55699 -8.98703 -8.76581 -7.94823 -7.40844 -6.24397 -4.27241 2.19619 2.59698 3.00294 3.06508 3.16660 3.22447 3.23443 3.36176 3.72223 3.80911 4.00382 4.09555 4.22996 4.35321 4.43496 4.65627 4.86419 4.95577 5.04129 5.09041 5.10321 5.24181 5.34228 5.43825 5.51285 5.51386 5.64614 5.68522 5.81224 5.84874 5.91599 6.08310 6.24766 6.39787 6.50770 6.55718 6.62641 6.83066 7.04237 7.21948 7.31109 7.48348 7.87105 7.90154 8.33795 8.56501 8.62803 8.81519 9.30865 10.88182 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.026871 B = 0.002479 C = 0.002394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.764342 B =11293.780175 C =11691.977926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.095 3.905 3 C -0.286 4.286 4 C 0.287 3.713 5 N -0.641 5.641 6 C 0.740 3.260 7 O -0.559 6.559 8 N -0.644 5.644 9 C 0.125 3.875 10 C -0.168 4.168 11 H 0.129 0.871 12 C -0.132 4.132 13 C -0.151 4.151 14 C 0.128 3.872 15 O -0.566 6.566 16 C 0.171 3.829 17 N -0.321 5.321 18 N -0.319 5.319 19 C 0.232 3.768 20 C -0.540 4.540 21 H 0.081 0.919 22 C 0.078 3.922 23 N -0.887 5.887 24 Si 0.874 3.126 25 H -0.271 1.271 26 H -0.280 1.280 27 H -0.264 1.264 28 H 0.081 0.919 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.162 0.838 32 H 0.405 0.595 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.097 0.903 36 H 0.105 0.895 37 H 0.051 0.949 38 H 0.052 0.948 39 H 0.381 0.619 40 H 0.092 0.908 41 H 0.077 0.923 42 H 0.050 0.950 43 H 0.045 0.955 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.263 21.493 -6.815 26.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.036 4.036 3 C -0.317 4.317 4 C 0.033 3.967 5 N -0.292 5.292 6 C 0.441 3.559 7 O -0.434 6.434 8 N -0.384 5.384 9 C 0.001 3.999 10 C -0.187 4.187 11 H 0.147 0.853 12 C -0.169 4.169 13 C -0.153 4.153 14 C 0.050 3.950 15 O -0.372 6.372 16 C 0.048 3.952 17 N -0.152 5.152 18 N -0.101 5.101 19 C 0.113 3.887 20 C -0.578 4.578 21 H 0.099 0.901 22 C -0.126 4.126 23 N -0.524 5.524 24 Si 0.700 3.300 25 H -0.197 1.197 26 H -0.206 1.206 27 H -0.189 1.189 28 H 0.099 0.901 29 H 0.094 0.906 30 H 0.089 0.911 31 H 0.179 0.821 32 H 0.241 0.759 33 H 0.101 0.899 34 H 0.100 0.900 35 H 0.115 0.885 36 H 0.123 0.877 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.228 0.772 40 H 0.110 0.890 41 H 0.095 0.905 42 H 0.068 0.932 43 H 0.063 0.937 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 13.589 19.893 -6.689 25.003 hybrid contribution 0.503 0.117 -0.472 0.700 sum 14.092 20.010 -7.161 25.500 Atomic orbital electron populations 1.20352 0.87793 1.02691 1.03455 1.21044 0.94893 0.86939 1.00684 1.21249 0.89641 0.99879 1.20887 1.18634 0.86563 0.89186 1.02285 1.41369 1.07607 1.03524 1.76663 1.14923 0.83027 0.80076 0.77861 1.90889 1.22565 1.73307 1.56633 1.47843 1.04470 1.07310 1.78728 1.21904 0.80719 0.98354 0.98901 1.23682 0.98407 0.96212 1.00378 0.85327 1.23018 1.02239 1.01095 0.90500 1.22608 0.99802 0.91413 1.01442 1.21325 0.88195 0.85683 0.99830 1.86533 1.34355 1.18748 1.97534 1.21365 0.98467 0.77676 0.97716 1.77249 0.99431 1.08370 1.30115 1.48484 1.01151 1.06973 1.53447 1.19988 0.95268 0.73771 0.99667 1.21186 1.47207 0.99011 0.90373 0.90114 1.24809 0.94512 0.97484 0.95765 1.69870 1.45793 1.18330 1.18424 0.86889 0.78957 0.81495 0.82650 1.19664 1.20561 1.18875 0.90078 0.90641 0.91141 0.82053 0.75926 0.89869 0.90024 0.88479 0.87681 0.93065 0.93013 0.77226 0.88965 0.90483 0.93224 0.93705 0.92145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.46 10.11 36.00 0.36 -1.09 16 2 C 0.10 2.03 6.92 -82.28 -0.57 1.46 16 3 C -0.29 -6.07 9.52 -39.84 -0.38 -6.45 16 4 C 0.29 6.03 8.11 -154.37 -1.25 4.77 16 5 N -0.64 -10.67 5.43 -15.51 -0.08 -10.75 16 6 C 0.74 12.03 8.54 -86.92 -0.74 11.28 16 7 O -0.56 -11.01 13.74 5.29 0.07 -10.93 16 8 N -0.64 -7.70 2.90 -174.99 -0.51 -8.20 16 9 C 0.12 1.00 6.82 -2.40 -0.02 0.99 16 10 C -0.17 -1.14 7.08 -89.22 -0.63 -1.77 16 11 H 0.13 0.57 8.14 -51.93 -0.42 0.15 16 12 C -0.13 -1.11 9.62 -26.73 -0.26 -1.36 16 13 C -0.15 -1.23 2.79 -153.10 -0.43 -1.66 16 14 C 0.13 0.76 7.37 37.16 0.27 1.03 16 15 O -0.57 -4.08 13.36 -35.23 -0.47 -4.55 16 16 C 0.17 1.82 6.41 -2.40 -0.02 1.81 16 17 N -0.32 -7.48 12.59 31.44 0.40 -7.08 16 18 N -0.32 -7.55 3.59 -58.32 -0.21 -7.76 16 19 C 0.23 5.67 5.06 -5.19 -0.03 5.64 16 20 C -0.54 -15.29 9.94 -34.44 -0.34 -15.63 16 21 H 0.08 2.59 8.06 -52.48 -0.42 2.17 16 22 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 23 N -0.89 -26.56 13.96 55.43 0.77 -25.78 16 24 Si 0.87 20.32 27.47 -169.99 -4.67 15.65 16 25 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 26 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 27 H -0.26 -5.75 6.54 56.52 0.37 -5.38 16 28 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 29 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 30 H 0.07 1.17 7.07 -51.93 -0.37 0.80 16 31 H 0.16 3.40 5.91 -52.49 -0.31 3.09 16 32 H 0.41 5.54 7.22 -40.82 -0.29 5.24 16 33 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.08 0.62 6.87 -51.93 -0.36 0.26 16 35 H 0.10 1.07 8.00 -51.93 -0.42 0.65 16 36 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.05 0.24 8.04 -51.93 -0.42 -0.18 16 38 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 39 H 0.38 0.91 9.12 45.56 0.42 1.33 16 40 H 0.09 1.21 7.88 -51.93 -0.41 0.80 16 41 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 42 H 0.05 1.13 6.09 -51.93 -0.32 0.81 16 43 H 0.04 1.08 7.57 -51.93 -0.39 0.69 16 44 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 364.70 15.07 5.50 5.50 Total: -1.00 -36.27 364.70 -8.74 -45.01 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: -5.41 Total: 7.78 kcal Atomic # 6 Polarization: 5.25 SS G_CDS: -4.12 Total: 1.13 kcal Atomic # 7 Polarization: -59.95 SS G_CDS: 0.37 Total: -59.58 kcal Atomic # 8 Polarization: -15.09 SS G_CDS: -0.40 Total: -15.48 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -4.67 Total: 15.65 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -36.27 -8.74 -45.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782803201.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.602 kcal (2) G-P(sol) polarization free energy of solvation -36.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.008 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds