Wall clock time and date at job start Tue Mar 31 2020 13:23:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35241 * 126.07259 * 2 1 4 4 C 1.40398 * 107.87159 * 180.15508 * 3 2 1 5 5 N 1.40190 * 125.97722 * 179.82653 * 4 3 2 6 6 C 1.34784 * 119.99939 * 359.71364 * 5 4 3 7 7 O 1.21590 * 119.99467 * 359.97438 * 6 5 4 8 8 N 1.34770 * 120.00193 * 180.02562 * 6 5 4 9 9 C 1.48151 * 127.83726 * 0.02593 * 8 6 5 10 10 C 1.54397 * 104.61301 * 219.56382 * 9 8 6 11 11 H 1.08998 * 117.61075 * 195.02919 * 10 9 8 12 12 C 1.52997 * 118.12359 * 39.46110 * 10 9 8 13 13 C 1.53000 * 60.55346 * 268.45627 * 12 10 9 14 14 C 1.53002 * 119.53941 * 248.23291 * 13 12 10 15 15 O 1.42905 * 109.47298 * 250.70490 * 14 13 12 16 16 C 1.48144 * 127.84040 * 179.97438 * 8 6 5 17 17 N 1.31214 * 108.05543 * 359.56122 * 4 3 2 18 18 N 1.34966 * 126.07288 * 179.67107 * 2 1 3 19 19 C 1.46507 * 125.97632 * 359.97438 * 18 2 1 20 20 C 1.50700 * 109.46759 * 269.99848 * 19 18 2 21 21 H 1.08003 * 120.00380 * 0.02562 * 20 19 18 22 22 C 1.37877 * 120.00090 * 179.97438 * 20 19 18 23 23 N 1.31507 * 120.00550 * 180.02562 * 22 20 19 24 24 Si 1.86797 * 119.99863 * 359.97438 * 22 20 19 25 25 H 1.48498 * 109.47044 * 89.99924 * 24 22 20 26 26 H 1.48500 * 109.47316 * 210.00234 * 24 22 20 27 27 H 1.48508 * 109.47391 * 330.00390 * 24 22 20 28 28 H 1.09003 * 109.47329 * 270.32181 * 1 2 3 29 29 H 1.08996 * 109.46806 * 30.32915 * 1 2 3 30 30 H 1.09007 * 109.46801 * 150.32465 * 1 2 3 31 31 H 1.07999 * 126.06456 * 359.97438 * 3 2 1 32 32 H 0.96997 * 120.00633 * 179.71872 * 5 4 3 33 33 H 1.08992 * 110.40889 * 100.78113 * 9 8 6 34 34 H 1.09000 * 110.40506 * 338.34433 * 9 8 6 35 35 H 1.09000 * 117.44564 * 16.10256 * 12 10 9 36 36 H 1.08999 * 117.44475 * 160.85568 * 12 10 9 37 37 H 1.08998 * 109.47146 * 10.70412 * 14 13 12 38 38 H 1.09001 * 109.46921 * 130.70456 * 14 13 12 39 39 H 0.96699 * 114.00126 * 179.97438 * 15 14 13 40 40 H 1.09004 * 110.40486 * 21.64718 * 16 8 6 41 41 H 1.09003 * 110.50809 * 259.27426 * 16 8 6 42 42 H 1.09001 * 109.47010 * 29.99045 * 19 18 2 43 43 H 1.08996 * 109.47248 * 149.99769 * 19 18 2 44 44 H 0.96998 * 120.00667 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3033 1.0931 0.0000 4 6 3.6370 0.6546 -0.0036 5 7 4.7737 1.4751 -0.0082 6 6 4.6370 2.8159 -0.0154 7 8 3.5277 3.3138 -0.0183 8 7 5.7297 3.6047 -0.0203 9 6 7.1514 3.1880 -0.0195 10 6 7.8501 4.1884 0.9264 11 1 8.9384 4.2391 0.8935 12 6 7.1132 4.6137 2.1980 13 6 6.9470 5.4393 0.9206 14 6 7.5279 6.8532 0.8553 15 8 6.4633 7.8065 0.8646 16 6 5.7818 5.0852 -0.0288 17 7 3.6337 -0.6575 0.0039 18 7 2.3017 -1.0909 0.0063 19 6 1.8501 -2.4846 0.0148 20 6 1.6959 -2.9539 1.4385 21 1 1.9121 -2.2812 2.2553 22 6 1.2777 -4.2417 1.6985 23 7 1.1426 -4.6512 2.9409 24 14 0.9017 -5.4046 0.2858 25 1 2.1337 -6.1449 -0.0873 26 1 -0.1476 -6.3686 0.7041 27 1 0.4199 -4.6247 -0.8826 28 1 -0.3634 0.0058 1.0277 29 1 -0.3633 0.8870 -0.5189 30 1 -0.3633 -0.8929 -0.5088 31 1 1.9720 2.1210 -0.0004 32 1 5.6587 1.0779 -0.0064 33 1 7.5690 3.2594 -1.0238 34 1 7.2493 2.1718 0.3625 35 1 6.2671 4.0045 2.5160 36 1 7.7078 5.0476 3.0019 37 1 8.1734 7.0210 1.7175 38 1 8.1083 6.9656 -0.0604 39 1 6.7588 8.7264 0.8256 40 1 4.8463 5.5006 0.3460 41 1 5.9847 5.4544 -1.0342 42 1 0.8912 -2.5590 -0.4981 43 1 2.5846 -3.1076 -0.4956 44 1 0.8480 -5.5571 3.1238 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000782803201.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:23:06 Heat of formation + Delta-G solvation = 29.507458 kcal Electronic energy + Delta-G solvation = -26523.824153 eV Core-core repulsion = 22671.906239 eV Total energy + Delta-G solvation = -3851.917914 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.44649 -41.67137 -39.96529 -37.32914 -36.39314 -35.32058 -34.59916 -33.08464 -32.81764 -29.98225 -29.17889 -27.93111 -27.47270 -26.99942 -24.54034 -22.88773 -21.92744 -21.23301 -20.52366 -20.21756 -19.23666 -18.88452 -18.10624 -17.76181 -17.41934 -17.16467 -16.56128 -16.10782 -16.05097 -15.81073 -15.42047 -14.95533 -14.73174 -14.55488 -14.54537 -14.26304 -13.89471 -13.81485 -13.73885 -13.63191 -13.26210 -13.12057 -12.89936 -12.71122 -12.56737 -12.27969 -12.19560 -11.82899 -11.64572 -11.48595 -11.33050 -11.22211 -10.92677 -10.89859 -10.48181 -10.01204 -9.61132 -9.08281 -8.40305 -6.51619 0.88878 0.97563 1.35601 1.37843 1.47529 1.57339 1.89750 2.26853 2.28549 2.42196 2.76300 2.92133 3.21646 3.40473 3.71560 3.79432 3.84979 4.07148 4.14711 4.32315 4.35678 4.40732 4.47896 4.50885 4.54593 4.64240 4.74369 4.78084 4.79171 4.82491 4.83490 4.85552 4.93075 4.97197 5.07070 5.10112 5.17874 5.22882 5.33092 5.76810 5.85344 5.98636 6.35943 6.51213 6.56702 6.99028 7.00565 7.12158 7.28283 8.76488 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.026871 B = 0.002479 C = 0.002394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.764342 B =11293.780175 C =11691.977926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.093 3.907 3 C -0.299 4.299 4 C 0.293 3.707 5 N -0.633 5.633 6 C 0.734 3.266 7 O -0.600 6.600 8 N -0.639 5.639 9 C 0.114 3.886 10 C -0.140 4.140 11 H 0.167 0.833 12 C -0.150 4.150 13 C -0.157 4.157 14 C 0.130 3.870 15 O -0.595 6.595 16 C 0.166 3.834 17 N -0.354 5.354 18 N -0.342 5.342 19 C 0.241 3.759 20 C -0.551 4.551 21 H 0.022 0.978 22 C 0.021 3.979 23 N -0.938 5.938 24 Si 0.952 3.048 25 H -0.265 1.265 26 H -0.274 1.274 27 H -0.233 1.233 28 H 0.078 0.922 29 H 0.107 0.893 30 H 0.080 0.920 31 H 0.163 0.837 32 H 0.419 0.581 33 H 0.112 0.888 34 H 0.087 0.913 35 H 0.061 0.939 36 H 0.125 0.875 37 H 0.069 0.931 38 H 0.074 0.926 39 H 0.400 0.600 40 H 0.057 0.943 41 H 0.093 0.907 42 H 0.076 0.924 43 H 0.050 0.950 44 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.904 22.057 -9.077 28.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.037 4.037 3 C -0.330 4.330 4 C 0.038 3.962 5 N -0.285 5.285 6 C 0.436 3.564 7 O -0.478 6.478 8 N -0.377 5.377 9 C -0.008 4.008 10 C -0.158 4.158 11 H 0.184 0.816 12 C -0.187 4.187 13 C -0.158 4.158 14 C 0.052 3.948 15 O -0.404 6.404 16 C 0.044 3.956 17 N -0.184 5.184 18 N -0.124 5.124 19 C 0.122 3.878 20 C -0.589 4.589 21 H 0.040 0.960 22 C -0.179 4.179 23 N -0.576 5.576 24 Si 0.773 3.227 25 H -0.190 1.190 26 H -0.199 1.199 27 H -0.156 1.156 28 H 0.096 0.904 29 H 0.125 0.875 30 H 0.099 0.901 31 H 0.180 0.820 32 H 0.257 0.743 33 H 0.130 0.870 34 H 0.105 0.895 35 H 0.079 0.921 36 H 0.143 0.857 37 H 0.087 0.913 38 H 0.092 0.908 39 H 0.250 0.750 40 H 0.076 0.924 41 H 0.111 0.889 42 H 0.093 0.907 43 H 0.068 0.932 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 15.306 20.525 -8.955 27.124 hybrid contribution 0.063 0.114 0.348 0.372 sum 15.369 20.639 -8.607 27.134 Atomic orbital electron populations 1.20511 0.85033 1.04777 1.03853 1.21725 0.96728 0.86254 0.99033 1.21397 0.90087 0.99946 1.21604 1.18917 0.87907 0.88979 1.00389 1.41319 1.07156 1.03490 1.76505 1.15089 0.83644 0.79939 0.77727 1.90844 1.24642 1.73889 1.58461 1.47850 1.05205 1.07738 1.76898 1.22331 0.78239 0.99166 1.01069 1.23798 0.99847 0.94192 0.98004 0.81559 1.23061 1.02068 1.01740 0.91840 1.22660 0.99222 0.93497 1.00463 1.21427 0.87814 0.83817 1.01731 1.86485 1.35785 1.20459 1.97683 1.21505 0.98247 0.76564 0.99309 1.77161 0.99816 1.09422 1.32045 1.48441 1.01703 1.07109 1.55179 1.19809 0.96516 0.74488 0.97037 1.21248 1.47756 0.98735 0.91132 0.95959 1.25849 0.93705 0.99287 0.99053 1.70032 1.46945 1.19246 1.21416 0.85660 0.79066 0.78727 0.79231 1.18969 1.19924 1.15615 0.90374 0.87460 0.90130 0.82016 0.74308 0.87039 0.89512 0.92074 0.85696 0.91269 0.90810 0.75009 0.92400 0.88894 0.90680 0.93217 0.91717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.81 10.11 71.24 0.72 -2.09 16 2 C 0.09 3.98 6.92 41.39 0.29 4.27 16 3 C -0.30 -13.01 9.52 22.10 0.21 -12.80 16 4 C 0.29 12.59 8.11 133.31 1.08 13.67 16 5 N -0.63 -21.35 5.43 -321.23 -1.74 -23.09 16 6 C 0.73 24.41 8.54 179.05 1.53 25.93 16 7 O -0.60 -24.59 13.74 -4.00 -0.05 -24.64 16 8 N -0.64 -15.04 2.90 -825.82 -2.39 -17.44 16 9 C 0.11 1.57 6.82 86.54 0.59 2.16 16 10 C -0.14 -1.47 7.08 -9.89 -0.07 -1.54 16 11 H 0.17 0.60 8.14 -2.39 -0.02 0.59 16 12 C -0.15 -2.36 9.62 30.59 0.29 -2.06 16 13 C -0.16 -2.28 2.79 -51.27 -0.14 -2.42 16 14 C 0.13 1.18 7.37 71.98 0.53 1.71 16 15 O -0.60 -7.72 13.36 -148.98 -1.99 -9.71 16 16 C 0.17 3.49 6.41 86.54 0.55 4.04 16 17 N -0.35 -16.81 12.59 -54.44 -0.69 -17.50 16 18 N -0.34 -16.41 3.59 -338.44 -1.22 -17.62 16 19 C 0.24 11.69 5.06 85.63 0.43 12.12 16 20 C -0.55 -32.10 9.94 25.60 0.25 -31.84 16 21 H 0.02 1.51 8.06 -2.91 -0.02 1.49 16 22 C 0.02 1.17 5.47 84.66 0.46 1.64 16 23 N -0.94 -57.68 13.96 21.45 0.30 -57.39 16 24 Si 0.95 41.14 27.47 68.60 1.88 43.02 16 25 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 26 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 27 H -0.23 -8.88 6.54 99.48 0.65 -8.22 16 28 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 29 H 0.11 2.87 8.14 -2.39 -0.02 2.85 16 30 H 0.08 2.52 7.07 -2.38 -0.02 2.51 16 31 H 0.16 7.02 5.91 -2.91 -0.02 7.00 16 32 H 0.42 11.38 7.22 -92.71 -0.67 10.71 16 33 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.09 1.14 6.87 -2.39 -0.02 1.12 16 35 H 0.06 1.41 8.00 -2.39 -0.02 1.39 16 36 H 0.12 1.42 8.14 -2.39 -0.02 1.41 16 37 H 0.07 0.40 8.04 -2.39 -0.02 0.38 16 38 H 0.07 0.36 8.14 -2.39 -0.02 0.34 16 39 H 0.40 1.25 9.12 -74.06 -0.68 0.57 16 40 H 0.06 1.61 7.88 -2.39 -0.02 1.59 16 41 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 42 H 0.08 3.24 6.09 -2.39 -0.01 3.23 16 43 H 0.05 2.35 7.57 -2.39 -0.02 2.33 16 44 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 Total: -1.00 -84.09 364.70 0.48 -83.60 By element: Atomic # 1 Polarization: 28.33 SS G_CDS: -0.35 Total: 27.97 kcal Atomic # 6 Polarization: 6.05 SS G_CDS: 6.73 Total: 12.79 kcal Atomic # 7 Polarization: -127.29 SS G_CDS: -5.74 Total: -133.03 kcal Atomic # 8 Polarization: -32.31 SS G_CDS: -2.05 Total: -34.35 kcal Atomic # 14 Polarization: 41.14 SS G_CDS: 1.88 Total: 43.02 kcal Total: -84.09 0.48 -83.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782803201.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.110 kcal (2) G-P(sol) polarization free energy of solvation -84.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.603 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds