Wall clock time and date at job start Tue Mar 31 2020 12:41:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38074 * 119.49562 * 2 1 4 4 C 1.38768 * 119.39554 * 179.72092 * 3 2 1 5 5 C 1.38958 * 118.44018 * 0.49651 * 4 3 2 6 6 N 1.39884 * 120.52005 * 179.77812 * 5 4 3 7 7 C 1.34781 * 120.00194 * 335.83559 * 6 5 4 8 8 O 1.21393 * 119.99832 * 4.51474 * 7 6 5 9 9 C 1.49318 * 119.99829 * 184.51771 * 7 6 5 10 10 O 1.21364 * 120.00365 * 359.97438 * 9 7 6 11 11 N 1.34781 * 119.99829 * 179.97438 * 9 7 6 12 12 C 1.46500 * 120.00054 * 179.97438 * 11 9 7 13 13 H 1.09004 * 109.46933 * 325.00174 * 12 11 9 14 14 C 1.52994 * 109.46967 * 84.99644 * 12 11 9 15 15 C 1.50702 * 109.47257 * 205.00193 * 12 11 9 16 16 H 1.08000 * 119.99589 * 354.57424 * 15 12 11 17 17 C 1.37878 * 120.00052 * 174.58345 * 15 12 11 18 18 N 1.31507 * 119.99648 * 161.63646 * 17 15 12 19 19 Si 1.86804 * 119.99827 * 341.90589 * 17 15 12 20 20 H 1.48499 * 109.46500 * 179.72648 * 19 17 15 21 21 H 1.48500 * 109.46933 * 299.72699 * 19 17 15 22 22 H 1.48501 * 109.46978 * 59.72981 * 19 17 15 23 23 C 1.39773 * 118.95586 * 359.50642 * 5 4 3 24 24 N 1.39129 * 119.74700 * 180.23023 * 23 5 4 25 25 C 1.46900 * 110.99811 * 164.10005 * 24 23 5 26 26 C 1.46897 * 111.00067 * 288.05371 * 24 23 5 27 27 N 1.32008 * 119.50074 * 179.97438 * 2 1 3 28 28 H 1.08995 * 109.47138 * 270.02383 * 1 2 3 29 29 H 1.08993 * 109.47017 * 30.02520 * 1 2 3 30 30 H 1.08996 * 109.46440 * 150.02354 * 1 2 3 31 31 H 1.08000 * 120.30025 * 359.97438 * 3 2 1 32 32 H 1.08006 * 120.77854 * 180.27214 * 4 3 2 33 33 H 0.96997 * 119.99668 * 155.82827 * 6 5 4 34 34 H 0.97003 * 119.99977 * 0.02562 * 11 9 7 35 35 H 1.08996 * 109.47408 * 294.84314 * 14 12 11 36 36 H 1.08997 * 109.47102 * 54.84783 * 14 12 11 37 37 H 1.09005 * 109.47082 * 174.83915 * 14 12 11 38 38 H 0.96996 * 120.00512 * 355.20705 * 18 17 15 39 39 H 1.08992 * 109.46975 * 63.95123 * 25 24 23 40 40 H 1.08992 * 109.47057 * 183.95687 * 25 24 23 41 41 H 1.09010 * 109.47148 * 303.95260 * 25 24 23 42 42 H 1.08997 * 109.46885 * 62.26846 * 26 24 23 43 43 H 1.09000 * 109.47073 * 182.26816 * 26 24 23 44 44 H 1.08995 * 109.46980 * 302.26864 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1868 1.2018 0.0000 4 6 3.5745 1.1994 0.0059 5 6 4.2342 -0.0236 0.0010 6 7 5.6320 -0.0768 0.0020 7 6 6.3463 0.9638 -0.4706 8 8 5.7806 1.9792 -0.8208 9 6 7.8335 0.8677 -0.5635 10 8 8.3991 -0.1473 -0.2130 11 7 8.5478 1.9082 -1.0366 12 6 10.0070 1.8141 -1.1272 13 1 10.3856 1.2248 -0.2920 14 6 10.3936 1.1389 -2.4445 15 6 10.6036 3.1971 -1.0774 16 1 9.9588 4.0635 -1.0758 17 6 11.9725 3.3562 -1.0342 18 7 12.5101 4.5140 -1.3505 19 14 13.0638 1.9251 -0.5337 20 1 14.4861 2.3499 -0.5734 21 1 12.7140 1.4941 0.8437 22 1 12.8586 0.7938 -1.4736 23 6 3.4790 -1.1998 0.0010 24 7 4.1225 -2.4333 0.0010 25 6 3.1966 -3.5101 0.3767 26 6 4.7429 -2.7035 -1.3028 27 7 2.1571 -1.1489 0.0005 28 1 -0.3633 0.0004 1.0276 29 1 -0.3633 0.8897 -0.5142 30 1 -0.3632 -0.8902 -0.5135 31 1 1.6435 2.1352 -0.0004 32 1 4.1288 2.1263 0.0104 33 1 6.0871 -0.8626 0.3429 34 1 8.0958 2.7196 -1.3164 35 1 10.0402 0.1078 -2.4417 36 1 9.9382 1.6768 -3.2759 37 1 11.4780 1.1511 -2.5545 38 1 11.9508 5.2344 -1.6807 39 1 2.4106 -3.5918 -0.3741 40 1 3.7407 -4.4525 0.4372 41 1 2.7513 -3.2848 1.3458 42 1 5.5037 -1.9499 -1.5063 43 1 5.2043 -3.6909 -1.2880 44 1 3.9810 -2.6701 -2.0816 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000783934929.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:44 Heat of formation + Delta-G solvation = -12.614113 kcal Electronic energy + Delta-G solvation = -26960.151117 eV Core-core repulsion = 23106.406675 eV Total energy + Delta-G solvation = -3853.744442 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.46225 -40.10712 -38.36594 -37.36035 -35.71985 -34.95867 -32.54211 -31.92091 -31.69430 -29.92498 -28.18968 -27.49887 -25.56181 -24.97818 -24.25556 -22.63708 -21.67258 -20.69173 -19.80882 -19.04692 -17.69634 -17.25647 -17.09157 -16.51537 -16.13947 -15.62635 -15.53431 -15.07339 -14.68957 -14.34095 -14.26865 -14.02164 -13.73196 -13.50504 -13.26956 -12.90782 -12.80118 -12.74065 -12.48687 -12.43443 -12.30712 -12.14199 -11.98788 -11.87554 -11.54379 -11.29358 -11.01514 -10.58936 -10.14832 -10.08094 -9.96986 -9.83951 -9.30553 -9.17269 -9.03115 -8.50058 -8.42611 -8.04639 -6.65653 -4.30390 0.71478 1.06490 1.70262 2.45883 3.20663 3.33084 3.39975 3.40039 3.54899 3.62574 3.87631 4.14920 4.37202 4.60614 4.69899 4.82352 4.84860 5.00645 5.05156 5.07622 5.15581 5.23270 5.31833 5.35675 5.40925 5.56311 5.61972 5.69132 5.71633 5.95579 6.04523 6.24151 6.32935 6.39299 6.43803 6.51059 6.76188 6.82033 6.95011 7.10753 7.18225 7.45396 7.67105 7.74766 8.13441 8.20822 8.41877 8.71392 9.37861 10.74027 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.023455 B = 0.002907 C = 0.002665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.468006 B = 9629.108333 C =10505.828407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.121 3.879 3 C -0.167 4.167 4 C -0.078 4.078 5 C 0.098 3.902 6 N -0.632 5.632 7 C 0.507 3.493 8 O -0.505 6.505 9 C 0.496 3.504 10 O -0.533 6.533 11 N -0.660 5.660 12 C 0.240 3.760 13 H 0.047 0.953 14 C -0.163 4.163 15 C -0.623 4.623 16 H 0.065 0.935 17 C 0.044 3.956 18 N -0.892 5.892 19 Si 1.036 2.964 20 H -0.282 1.282 21 H -0.279 1.279 22 H -0.270 1.270 23 C 0.282 3.718 24 N -0.488 5.488 25 C 0.038 3.962 26 C 0.024 3.976 27 N -0.496 5.496 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.138 0.862 32 H 0.170 0.830 33 H 0.430 0.570 34 H 0.407 0.593 35 H 0.031 0.969 36 H 0.047 0.953 37 H 0.067 0.933 38 H 0.271 0.729 39 H 0.045 0.955 40 H 0.071 0.929 41 H 0.072 0.928 42 H 0.076 0.924 43 H 0.085 0.915 44 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.620 -12.267 1.665 24.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.017 4.017 3 C -0.188 4.188 4 C -0.106 4.106 5 C -0.002 4.002 6 N -0.279 5.279 7 C 0.290 3.710 8 O -0.379 6.379 9 C 0.274 3.726 10 O -0.412 6.412 11 N -0.309 5.309 12 C 0.137 3.863 13 H 0.065 0.935 14 C -0.221 4.221 15 C -0.661 4.661 16 H 0.084 0.916 17 C -0.164 4.164 18 N -0.524 5.524 19 Si 0.863 3.137 20 H -0.207 1.207 21 H -0.205 1.205 22 H -0.196 1.196 23 C 0.047 3.953 24 N -0.208 5.208 25 C -0.109 4.109 26 C -0.123 4.123 27 N -0.210 5.210 28 H 0.095 0.905 29 H 0.093 0.907 30 H 0.092 0.908 31 H 0.156 0.844 32 H 0.187 0.813 33 H 0.270 0.730 34 H 0.242 0.758 35 H 0.050 0.950 36 H 0.066 0.934 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.064 0.936 40 H 0.089 0.911 41 H 0.090 0.910 42 H 0.094 0.906 43 H 0.103 0.897 44 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -19.971 -13.446 2.262 24.182 hybrid contribution -1.744 1.238 -0.761 2.270 sum -21.716 -12.208 1.501 24.957 Atomic orbital electron populations 1.20659 0.88718 1.03294 1.02944 1.21027 0.96733 0.87825 0.96158 1.21849 0.94139 0.99183 1.03645 1.22158 0.94407 0.98470 0.95528 1.18294 0.83140 0.93700 1.05057 1.43135 1.03888 1.21061 1.59782 1.20939 0.89656 0.83113 0.77300 1.90640 1.71637 1.29297 1.46375 1.19661 0.86432 0.85494 0.80985 1.90738 1.71245 1.29856 1.49316 1.46246 1.09771 1.15543 1.59371 1.19238 0.74146 0.98511 0.94380 0.93526 1.22525 1.02089 0.98052 0.99451 1.22050 0.94264 0.90599 1.59161 0.91650 1.25678 0.95884 1.01576 0.93225 1.70849 1.38899 1.04506 1.38099 0.84183 0.76499 0.75331 0.77664 1.20743 1.20517 1.19644 1.19496 0.87688 0.89737 0.98336 1.59518 1.31498 1.00653 1.29110 1.22222 0.94580 0.92420 1.01700 1.22534 0.99209 1.03463 0.87059 1.67451 1.07589 1.30049 1.15951 0.90528 0.90669 0.90786 0.84381 0.81327 0.73038 0.75811 0.94959 0.93381 0.91473 0.91857 0.93603 0.91058 0.90951 0.90575 0.89669 0.94319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.70 10.16 36.01 0.37 -0.33 16 2 C 0.12 1.29 6.78 -82.58 -0.56 0.73 16 3 C -0.17 -1.78 9.72 -39.45 -0.38 -2.16 16 4 C -0.08 -1.01 8.92 -39.12 -0.35 -1.36 16 5 C 0.10 1.32 6.31 -83.34 -0.53 0.79 16 6 N -0.63 -8.81 4.12 -10.05 -0.04 -8.85 16 7 C 0.51 8.18 7.79 -11.65 -0.09 8.09 16 8 O -0.50 -8.55 13.38 5.46 0.07 -8.48 16 9 C 0.50 9.30 7.85 -11.65 -0.09 9.20 16 10 O -0.53 -10.83 16.14 5.48 0.09 -10.74 16 11 N -0.66 -13.42 5.06 -55.41 -0.28 -13.70 16 12 C 0.24 5.58 2.14 -69.08 -0.15 5.44 16 13 H 0.05 1.15 6.23 -51.93 -0.32 0.83 16 14 C -0.16 -3.52 9.17 37.15 0.34 -3.18 16 15 C -0.62 -16.53 9.00 -34.44 -0.31 -16.84 16 16 H 0.07 1.83 7.96 -52.49 -0.42 1.41 16 17 C 0.04 1.20 5.29 -17.82 -0.09 1.11 16 18 N -0.89 -26.03 13.70 55.43 0.76 -25.27 16 19 Si 1.04 24.14 26.32 -169.99 -4.47 19.66 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 22 H -0.27 -5.83 5.75 56.52 0.32 -5.50 16 23 C 0.28 3.55 6.07 -154.75 -0.94 2.61 16 24 N -0.49 -5.39 4.44 -188.76 -0.84 -6.23 16 25 C 0.04 0.35 8.79 60.06 0.53 0.88 16 26 C 0.02 0.24 9.23 60.06 0.55 0.79 16 27 N -0.50 -6.00 8.77 -8.48 -0.07 -6.08 16 28 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.41 8.07 -51.93 -0.42 -0.01 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 32 H 0.17 2.34 5.52 -52.48 -0.29 2.05 16 33 H 0.43 5.73 7.36 -40.82 -0.30 5.43 16 34 H 0.41 7.87 7.99 -40.82 -0.33 7.54 16 35 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 37 H 0.07 1.48 4.89 -51.93 -0.25 1.23 16 38 H 0.27 7.86 8.73 -40.82 -0.36 7.50 16 39 H 0.05 0.43 7.85 -51.93 -0.41 0.02 16 40 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.07 0.69 8.08 -51.92 -0.42 0.27 16 42 H 0.08 0.84 6.64 -51.93 -0.35 0.50 16 43 H 0.08 0.68 8.12 -51.93 -0.42 0.25 16 44 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 363.44 15.07 5.48 5.48 Total: -1.00 -30.24 363.44 -7.13 -37.36 By element: Atomic # 1 Polarization: 17.20 SS G_CDS: -6.11 Total: 11.08 kcal Atomic # 6 Polarization: 7.46 SS G_CDS: -1.70 Total: 5.75 kcal Atomic # 7 Polarization: -59.65 SS G_CDS: -0.47 Total: -60.12 kcal Atomic # 8 Polarization: -19.38 SS G_CDS: 0.16 Total: -19.22 kcal Atomic # 14 Polarization: 24.14 SS G_CDS: -4.47 Total: 19.66 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.24 -7.13 -37.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000783934929.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.747 kcal (2) G-P(sol) polarization free energy of solvation -30.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds