Wall clock time and date at job start Tue Mar 31 2020 12:41:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38074 * 119.49562 * 2 1 4 4 C 1.38768 * 119.39554 * 179.72092 * 3 2 1 5 5 C 1.38958 * 118.44018 * 0.49651 * 4 3 2 6 6 N 1.39884 * 120.52005 * 179.77812 * 5 4 3 7 7 C 1.34781 * 120.00194 * 335.83559 * 6 5 4 8 8 O 1.21393 * 119.99832 * 4.51474 * 7 6 5 9 9 C 1.49318 * 119.99829 * 184.51771 * 7 6 5 10 10 O 1.21364 * 120.00365 * 359.97438 * 9 7 6 11 11 N 1.34781 * 119.99829 * 179.97438 * 9 7 6 12 12 C 1.46500 * 120.00054 * 179.97438 * 11 9 7 13 13 H 1.09004 * 109.46933 * 325.00174 * 12 11 9 14 14 C 1.52994 * 109.46967 * 84.99644 * 12 11 9 15 15 C 1.50702 * 109.47257 * 205.00193 * 12 11 9 16 16 H 1.08000 * 119.99589 * 354.57424 * 15 12 11 17 17 C 1.37878 * 120.00052 * 174.58345 * 15 12 11 18 18 N 1.31507 * 119.99648 * 161.63646 * 17 15 12 19 19 Si 1.86804 * 119.99827 * 341.90589 * 17 15 12 20 20 H 1.48499 * 109.46500 * 179.72648 * 19 17 15 21 21 H 1.48500 * 109.46933 * 299.72699 * 19 17 15 22 22 H 1.48501 * 109.46978 * 59.72981 * 19 17 15 23 23 C 1.39773 * 118.95586 * 359.50642 * 5 4 3 24 24 N 1.39129 * 119.74700 * 180.23023 * 23 5 4 25 25 C 1.46900 * 110.99811 * 164.10005 * 24 23 5 26 26 C 1.46897 * 111.00067 * 288.05371 * 24 23 5 27 27 N 1.32008 * 119.50074 * 179.97438 * 2 1 3 28 28 H 1.08995 * 109.47138 * 270.02383 * 1 2 3 29 29 H 1.08993 * 109.47017 * 30.02520 * 1 2 3 30 30 H 1.08996 * 109.46440 * 150.02354 * 1 2 3 31 31 H 1.08000 * 120.30025 * 359.97438 * 3 2 1 32 32 H 1.08006 * 120.77854 * 180.27214 * 4 3 2 33 33 H 0.96997 * 119.99668 * 155.82827 * 6 5 4 34 34 H 0.97003 * 119.99977 * 0.02562 * 11 9 7 35 35 H 1.08996 * 109.47408 * 294.84314 * 14 12 11 36 36 H 1.08997 * 109.47102 * 54.84783 * 14 12 11 37 37 H 1.09005 * 109.47082 * 174.83915 * 14 12 11 38 38 H 0.96996 * 120.00512 * 355.20705 * 18 17 15 39 39 H 1.08992 * 109.46975 * 63.95123 * 25 24 23 40 40 H 1.08992 * 109.47057 * 183.95687 * 25 24 23 41 41 H 1.09010 * 109.47148 * 303.95260 * 25 24 23 42 42 H 1.08997 * 109.46885 * 62.26846 * 26 24 23 43 43 H 1.09000 * 109.47073 * 182.26816 * 26 24 23 44 44 H 1.08995 * 109.46980 * 302.26864 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1868 1.2018 0.0000 4 6 3.5745 1.1994 0.0059 5 6 4.2342 -0.0236 0.0010 6 7 5.6320 -0.0768 0.0020 7 6 6.3463 0.9638 -0.4706 8 8 5.7806 1.9792 -0.8208 9 6 7.8335 0.8677 -0.5635 10 8 8.3991 -0.1473 -0.2130 11 7 8.5478 1.9082 -1.0366 12 6 10.0070 1.8141 -1.1272 13 1 10.3856 1.2248 -0.2920 14 6 10.3936 1.1389 -2.4445 15 6 10.6036 3.1971 -1.0774 16 1 9.9588 4.0635 -1.0758 17 6 11.9725 3.3562 -1.0342 18 7 12.5101 4.5140 -1.3505 19 14 13.0638 1.9251 -0.5337 20 1 14.4861 2.3499 -0.5734 21 1 12.7140 1.4941 0.8437 22 1 12.8586 0.7938 -1.4736 23 6 3.4790 -1.1998 0.0010 24 7 4.1225 -2.4333 0.0010 25 6 3.1966 -3.5101 0.3767 26 6 4.7429 -2.7035 -1.3028 27 7 2.1571 -1.1489 0.0005 28 1 -0.3633 0.0004 1.0276 29 1 -0.3633 0.8897 -0.5142 30 1 -0.3632 -0.8902 -0.5135 31 1 1.6435 2.1352 -0.0004 32 1 4.1288 2.1263 0.0104 33 1 6.0871 -0.8626 0.3429 34 1 8.0958 2.7196 -1.3164 35 1 10.0402 0.1078 -2.4417 36 1 9.9382 1.6768 -3.2759 37 1 11.4780 1.1511 -2.5545 38 1 11.9508 5.2344 -1.6807 39 1 2.4106 -3.5918 -0.3741 40 1 3.7407 -4.4525 0.4372 41 1 2.7513 -3.2848 1.3458 42 1 5.5037 -1.9499 -1.5063 43 1 5.2043 -3.6909 -1.2880 44 1 3.9810 -2.6701 -2.0816 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000783934929.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:43 Heat of formation + Delta-G solvation = -34.198866 kcal Electronic energy + Delta-G solvation = -26961.087102 eV Core-core repulsion = 23106.406675 eV Total energy + Delta-G solvation = -3854.680427 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.54225 -41.33381 -39.79223 -38.18258 -37.22325 -36.36470 -34.50937 -32.88439 -32.48712 -31.70550 -29.00915 -28.31577 -27.00588 -26.48920 -25.43067 -23.70669 -22.61964 -22.17127 -21.37849 -20.48543 -19.39325 -18.50862 -17.99699 -17.79212 -17.40997 -16.91055 -16.68054 -16.31953 -15.78542 -15.52160 -15.24586 -15.14896 -15.01808 -14.89478 -14.68207 -14.37439 -14.28050 -13.66640 -13.63102 -13.51451 -13.38583 -13.22384 -13.08235 -12.90169 -12.74049 -12.61564 -12.44512 -12.01647 -11.97172 -11.64870 -11.17529 -11.10845 -10.88747 -10.55829 -10.51204 -10.17756 -10.01096 -8.97549 -8.83260 -6.48171 -0.31442 0.12446 0.44736 1.15049 1.48721 1.53327 1.72958 2.00207 2.38839 2.44428 2.54084 2.70257 2.97101 3.28767 3.36822 3.76865 3.89364 3.98601 4.16858 4.27287 4.35770 4.42099 4.52165 4.61908 4.66863 4.67398 4.69243 4.80230 4.82090 4.85803 4.92886 4.99224 5.00812 5.09310 5.21889 5.27864 5.41954 5.48700 5.52443 5.62721 5.80751 5.97494 6.03787 6.34823 6.45622 6.59801 6.85319 6.90906 7.27743 8.55834 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.023455 B = 0.002907 C = 0.002665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.468006 B = 9629.108333 C =10505.828407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.121 3.879 3 C -0.166 4.166 4 C -0.089 4.089 5 C 0.071 3.929 6 N -0.616 5.616 7 C 0.515 3.485 8 O -0.516 6.516 9 C 0.500 3.500 10 O -0.546 6.546 11 N -0.667 5.667 12 C 0.243 3.757 13 H 0.039 0.961 14 C -0.157 4.157 15 C -0.622 4.622 16 H 0.038 0.962 17 C -0.001 4.001 18 N -0.923 5.923 19 Si 1.070 2.930 20 H -0.284 1.284 21 H -0.270 1.270 22 H -0.240 1.240 23 C 0.279 3.721 24 N -0.496 5.496 25 C 0.041 3.959 26 C 0.027 3.973 27 N -0.507 5.507 28 H 0.090 0.910 29 H 0.096 0.904 30 H 0.074 0.926 31 H 0.166 0.834 32 H 0.157 0.843 33 H 0.432 0.568 34 H 0.410 0.590 35 H 0.048 0.952 36 H 0.050 0.950 37 H 0.063 0.937 38 H 0.259 0.741 39 H 0.043 0.957 40 H 0.091 0.909 41 H 0.066 0.934 42 H 0.061 0.939 43 H 0.106 0.894 44 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.454 -14.346 1.826 27.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.017 4.017 3 C -0.187 4.187 4 C -0.116 4.116 5 C -0.028 4.028 6 N -0.262 5.262 7 C 0.297 3.703 8 O -0.392 6.392 9 C 0.280 3.720 10 O -0.425 6.425 11 N -0.317 5.317 12 C 0.139 3.861 13 H 0.057 0.943 14 C -0.215 4.215 15 C -0.660 4.660 16 H 0.056 0.944 17 C -0.202 4.202 18 N -0.557 5.557 19 Si 0.891 3.109 20 H -0.209 1.209 21 H -0.195 1.195 22 H -0.164 1.164 23 C 0.046 3.954 24 N -0.216 5.216 25 C -0.105 4.105 26 C -0.120 4.120 27 N -0.221 5.221 28 H 0.109 0.891 29 H 0.115 0.885 30 H 0.093 0.907 31 H 0.184 0.816 32 H 0.174 0.826 33 H 0.272 0.728 34 H 0.245 0.755 35 H 0.067 0.933 36 H 0.070 0.930 37 H 0.082 0.918 38 H 0.068 0.932 39 H 0.062 0.938 40 H 0.110 0.890 41 H 0.084 0.916 42 H 0.080 0.920 43 H 0.125 0.875 44 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -21.862 -15.555 2.425 26.940 hybrid contribution -1.370 1.892 -0.770 2.460 sum -23.232 -13.663 1.654 27.003 Atomic orbital electron populations 1.20767 0.85984 1.04427 1.04130 1.21691 0.98520 0.87364 0.94149 1.22148 0.93243 1.00584 1.02695 1.22183 0.95577 0.97837 0.96024 1.18432 0.82519 0.94518 1.07312 1.42924 1.04306 1.20227 1.58787 1.20289 0.88301 0.83671 0.78011 1.90652 1.71362 1.29812 1.47366 1.19969 0.87609 0.84610 0.79811 1.90721 1.72006 1.30227 1.49554 1.46069 1.08854 1.16405 1.60347 1.18997 0.75753 0.96295 0.95041 0.94334 1.22412 1.01879 0.98859 0.98353 1.22203 0.94180 0.91585 1.58044 0.94354 1.26924 0.97730 1.02862 0.92694 1.70956 1.38970 1.05246 1.40488 0.83767 0.74826 0.73753 0.78549 1.20920 1.19519 1.16421 1.19661 0.87957 0.90053 0.97764 1.59547 1.31845 1.00631 1.29559 1.22250 0.94506 0.92624 1.01155 1.22541 0.98756 1.04139 0.86517 1.67577 1.07253 1.30792 1.16480 0.89141 0.88537 0.90679 0.81606 0.82574 0.72751 0.75461 0.93270 0.93048 0.91836 0.93180 0.93823 0.89005 0.91554 0.92012 0.87530 0.94474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.06 10.16 71.24 0.72 -0.34 16 2 C 0.12 2.31 6.78 42.49 0.29 2.59 16 3 C -0.17 -3.21 9.72 22.36 0.22 -2.99 16 4 C -0.09 -2.23 8.92 22.57 0.20 -2.03 16 5 C 0.07 1.87 6.31 38.40 0.24 2.12 16 6 N -0.62 -16.89 4.12 -304.06 -1.25 -18.14 16 7 C 0.51 16.48 7.79 87.23 0.68 17.16 16 8 O -0.52 -17.49 13.38 -3.38 -0.05 -17.53 16 9 C 0.50 18.51 7.85 87.23 0.68 19.20 16 10 O -0.55 -21.64 16.14 -3.29 -0.05 -21.70 16 11 N -0.67 -27.05 5.06 -447.56 -2.27 -29.31 16 12 C 0.24 11.17 2.14 44.24 0.09 11.27 16 13 H 0.04 1.86 6.23 -2.38 -0.01 1.85 16 14 C -0.16 -6.55 9.17 71.98 0.66 -5.89 16 15 C -0.62 -33.47 9.00 25.60 0.23 -33.24 16 16 H 0.04 2.22 7.96 -2.91 -0.02 2.20 16 17 C 0.00 -0.04 5.29 84.66 0.45 0.41 16 18 N -0.92 -55.03 13.70 21.45 0.29 -54.73 16 19 Si 1.07 47.92 26.32 68.60 1.81 49.72 16 20 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 21 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 22 H -0.24 -9.54 5.75 99.48 0.57 -8.97 16 23 C 0.28 6.72 6.07 133.21 0.81 7.53 16 24 N -0.50 -10.25 4.44 -751.11 -3.33 -13.58 16 25 C 0.04 0.68 8.79 127.69 1.12 1.80 16 26 C 0.03 0.49 9.23 127.69 1.18 1.67 16 27 N -0.51 -11.41 8.77 -180.75 -1.58 -12.99 16 28 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.10 0.68 8.07 -2.39 -0.02 0.66 16 30 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.17 2.17 8.06 -2.91 -0.02 2.15 16 32 H 0.16 4.32 5.52 -2.91 -0.02 4.30 16 33 H 0.43 11.26 7.36 -92.71 -0.68 10.58 16 34 H 0.41 16.07 7.99 -92.71 -0.74 15.33 16 35 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 37 H 0.06 2.68 4.89 -2.38 -0.01 2.67 16 38 H 0.26 15.56 8.73 -92.71 -0.81 14.76 16 39 H 0.04 0.74 7.85 -2.39 -0.02 0.72 16 40 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.07 1.16 8.08 -2.38 -0.02 1.15 16 42 H 0.06 1.31 6.64 -2.39 -0.02 1.29 16 43 H 0.11 1.46 8.12 -2.39 -0.02 1.44 16 44 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 Total: -1.00 -65.14 363.44 0.60 -64.55 By element: Atomic # 1 Polarization: 35.01 SS G_CDS: -0.55 Total: 34.47 kcal Atomic # 6 Polarization: 11.68 SS G_CDS: 7.58 Total: 19.26 kcal Atomic # 7 Polarization: -120.62 SS G_CDS: -8.14 Total: -128.76 kcal Atomic # 8 Polarization: -39.13 SS G_CDS: -0.10 Total: -39.23 kcal Atomic # 14 Polarization: 47.92 SS G_CDS: 1.81 Total: 49.72 kcal Total: -65.14 0.60 -64.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000783934929.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.347 kcal (2) G-P(sol) polarization free energy of solvation -65.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds