Wall clock time and date at job start Tue Mar 31 2020 12:41:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38064 * 119.49561 * 2 1 4 4 C 1.38768 * 119.40083 * 180.22747 * 3 2 1 5 5 C 1.38960 * 118.43343 * 359.50335 * 4 3 2 6 6 N 1.39883 * 120.52096 * 180.27577 * 5 4 3 7 7 C 1.34775 * 119.99771 * 334.43328 * 6 5 4 8 8 O 1.21398 * 120.00264 * 4.31619 * 7 6 5 9 9 C 1.49323 * 120.00136 * 184.32288 * 7 6 5 10 10 O 1.21356 * 119.99968 * 359.97438 * 9 7 6 11 11 N 1.34775 * 120.00136 * 180.02562 * 9 7 6 12 12 C 1.46503 * 119.99872 * 179.97438 * 11 9 7 13 13 H 1.08994 * 109.47363 * 35.00243 * 12 11 9 14 14 C 1.52999 * 109.47112 * 274.99953 * 12 11 9 15 15 C 1.50705 * 109.46750 * 155.00148 * 12 11 9 16 16 H 1.07995 * 120.00490 * 359.97438 * 15 12 11 17 17 C 1.37880 * 119.99711 * 180.02562 * 15 12 11 18 18 N 1.31516 * 120.00063 * 359.97438 * 17 15 12 19 19 Si 1.86800 * 120.00007 * 179.97438 * 17 15 12 20 20 H 1.48496 * 109.47298 * 89.99532 * 19 17 15 21 21 H 1.48502 * 109.46925 * 209.99463 * 19 17 15 22 22 H 1.48501 * 109.47089 * 329.99602 * 19 17 15 23 23 C 1.39771 * 118.95805 * 0.24501 * 5 4 3 24 24 N 1.39123 * 119.75135 * 179.97438 * 23 5 4 25 25 C 1.46900 * 111.00301 * 163.32968 * 24 23 5 26 26 C 1.46904 * 111.00330 * 287.28891 * 24 23 5 27 27 N 1.32003 * 119.49760 * 179.71807 * 2 1 3 28 28 H 1.08997 * 109.47489 * 270.27785 * 1 2 3 29 29 H 1.09007 * 109.47288 * 30.28184 * 1 2 3 30 30 H 1.09008 * 109.47117 * 150.27907 * 1 2 3 31 31 H 1.08005 * 120.30495 * 359.97438 * 3 2 1 32 32 H 1.07992 * 120.78895 * 179.77079 * 4 3 2 33 33 H 0.96997 * 119.99981 * 154.43930 * 6 5 4 34 34 H 0.97003 * 119.99839 * 359.97438 * 11 9 7 35 35 H 1.09006 * 109.46876 * 300.00127 * 14 12 11 36 36 H 1.08992 * 109.47199 * 60.00102 * 14 12 11 37 37 H 1.09000 * 109.47278 * 180.02562 * 14 12 11 38 38 H 0.97001 * 119.99947 * 180.02562 * 18 17 15 39 39 H 1.08999 * 109.46722 * 60.00217 * 25 24 23 40 40 H 1.09000 * 109.47106 * 180.02562 * 25 24 23 41 41 H 1.08999 * 109.47000 * 300.00440 * 25 24 23 42 42 H 1.09006 * 109.46820 * 61.45376 * 26 24 23 43 43 H 1.08999 * 109.47277 * 181.45307 * 26 24 23 44 44 H 1.08996 * 109.46881 * 301.45555 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1867 1.2017 0.0000 4 6 3.5744 1.1994 -0.0048 5 6 4.2341 -0.0236 0.0011 6 7 5.6319 -0.0769 0.0024 7 6 6.3457 0.9474 -0.5053 8 8 5.7794 1.9492 -0.8919 9 6 7.8332 0.8500 -0.5925 10 8 8.3994 -0.1512 -0.2057 11 7 8.5470 1.8745 -1.0997 12 6 10.0065 1.7791 -1.1847 13 1 10.2911 0.7508 -1.4071 14 6 10.6238 2.2020 0.1498 15 6 10.5062 2.6865 -2.2793 16 1 9.8067 3.2750 -2.8544 17 6 11.8565 2.7646 -2.5473 18 7 12.7083 2.0476 -1.8473 19 14 12.4759 3.8887 -3.9045 20 1 12.7625 5.2327 -3.3418 21 1 13.7178 3.3215 -4.4887 22 1 11.4398 4.0055 -4.9619 23 6 3.4789 -1.1998 0.0064 24 7 4.1223 -2.4333 0.0118 25 6 3.2010 -3.5059 0.4101 26 6 4.7271 -2.7174 -1.2964 27 7 2.1569 -1.1489 0.0057 28 1 -0.3634 0.0050 1.0276 29 1 -0.3634 0.8875 -0.5182 30 1 -0.3634 -0.8925 -0.5095 31 1 1.6435 2.1352 -0.0004 32 1 4.1287 2.1262 -0.0086 33 1 6.0874 -0.8510 0.3687 34 1 8.0944 2.6750 -1.4085 35 1 10.3392 3.2305 0.3721 36 1 10.2623 1.5458 0.9414 37 1 11.7096 2.1315 0.0864 38 1 13.6583 2.1028 -2.0356 39 1 2.3685 -3.5491 -0.2922 40 1 3.7298 -4.4591 0.4064 41 1 2.8213 -3.3054 1.4119 42 1 5.4753 -1.9579 -1.5235 43 1 5.2012 -3.6986 -1.2722 44 1 3.9536 -2.7065 -2.0643 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000783934931.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:46 Heat of formation + Delta-G solvation = -14.083756 kcal Electronic energy + Delta-G solvation = -26878.168256 eV Core-core repulsion = 23024.360085 eV Total energy + Delta-G solvation = -3853.808170 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.37994 -39.99095 -38.19607 -37.29689 -35.59123 -34.81538 -32.46604 -31.85804 -31.64090 -29.22515 -28.10913 -27.42257 -25.47082 -25.30087 -24.23397 -22.58634 -21.62829 -20.78394 -19.69961 -18.87886 -17.44069 -17.07525 -16.77195 -16.15252 -15.77209 -15.61042 -15.39789 -15.09307 -14.64115 -14.30297 -14.21960 -14.17724 -13.68545 -13.47240 -13.21757 -12.85620 -12.68851 -12.52153 -12.41933 -12.38006 -12.08930 -11.92674 -11.83453 -11.27717 -11.14896 -11.02665 -10.93336 -10.82551 -10.40870 -10.30411 -10.02219 -9.88572 -9.20184 -9.16085 -8.93674 -8.66099 -8.18394 -7.98902 -6.20363 -4.30177 0.77784 1.11383 1.81860 2.57912 3.21738 3.26818 3.28749 3.31657 3.51726 3.71190 3.99003 4.20042 4.30583 4.66152 4.75678 4.89651 4.97833 5.09040 5.12354 5.12870 5.20609 5.29250 5.35013 5.40314 5.46421 5.64210 5.67016 5.74564 5.77122 5.99697 6.10876 6.38773 6.49554 6.68588 6.80944 6.91258 6.98809 7.06953 7.17634 7.36200 7.58432 7.72450 7.77560 7.84967 8.01823 8.38508 8.56446 8.80953 9.37017 10.85651 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.022215 B = 0.002761 C = 0.002602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.111208 B =10139.358261 C =10759.342132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.121 3.879 3 C -0.167 4.167 4 C -0.076 4.076 5 C 0.100 3.900 6 N -0.633 5.633 7 C 0.506 3.494 8 O -0.508 6.508 9 C 0.495 3.505 10 O -0.531 6.531 11 N -0.667 5.667 12 C 0.262 3.738 13 H 0.055 0.945 14 C -0.149 4.149 15 C -0.537 4.537 16 H 0.064 0.936 17 C 0.068 3.932 18 N -0.883 5.883 19 Si 0.905 3.095 20 H -0.278 1.278 21 H -0.284 1.284 22 H -0.273 1.273 23 C 0.281 3.719 24 N -0.488 5.488 25 C 0.037 3.963 26 C 0.024 3.976 27 N -0.497 5.497 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.138 0.862 32 H 0.167 0.833 33 H 0.430 0.570 34 H 0.402 0.598 35 H 0.030 0.970 36 H 0.017 0.983 37 H 0.095 0.905 38 H 0.266 0.734 39 H 0.047 0.953 40 H 0.070 0.930 41 H 0.070 0.930 42 H 0.076 0.924 43 H 0.085 0.915 44 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.018 -6.006 4.089 22.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.018 4.018 3 C -0.189 4.189 4 C -0.104 4.104 5 C 0.000 4.000 6 N -0.280 5.280 7 C 0.289 3.711 8 O -0.382 6.382 9 C 0.273 3.727 10 O -0.410 6.410 11 N -0.316 5.316 12 C 0.161 3.839 13 H 0.073 0.927 14 C -0.207 4.207 15 C -0.576 4.576 16 H 0.083 0.917 17 C -0.136 4.136 18 N -0.520 5.520 19 Si 0.732 3.268 20 H -0.204 1.204 21 H -0.210 1.210 22 H -0.197 1.197 23 C 0.047 3.953 24 N -0.208 5.208 25 C -0.110 4.110 26 C -0.122 4.122 27 N -0.211 5.211 28 H 0.094 0.906 29 H 0.093 0.907 30 H 0.092 0.908 31 H 0.156 0.844 32 H 0.184 0.816 33 H 0.270 0.730 34 H 0.237 0.763 35 H 0.049 0.951 36 H 0.036 0.964 37 H 0.113 0.887 38 H 0.076 0.924 39 H 0.066 0.934 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.095 0.905 43 H 0.103 0.897 44 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -20.735 -6.837 4.407 22.273 hybrid contribution 0.308 1.300 -1.124 1.745 sum -20.427 -5.537 3.283 21.417 Atomic orbital electron populations 1.20657 0.88771 1.03272 1.02893 1.21009 0.96703 0.87840 0.96264 1.21832 0.94140 0.99153 1.03731 1.22073 0.94355 0.98360 0.95595 1.18297 0.83286 0.93604 1.04837 1.43152 1.03792 1.22672 1.58367 1.21081 0.89883 0.82882 0.77216 1.90642 1.71786 1.29739 1.46081 1.19590 0.86157 0.85450 0.81500 1.90746 1.71184 1.30499 1.48549 1.46510 1.10590 1.16955 1.57519 1.18990 0.71466 0.99043 0.94370 0.92745 1.22104 1.04699 0.97860 0.96086 1.21189 0.92688 1.26250 1.17447 0.91741 1.24877 0.96455 0.95680 0.96558 1.69891 1.02860 1.39626 1.39624 0.86392 0.78383 0.80444 0.81600 1.20433 1.21004 1.19745 1.19506 0.87645 0.89829 0.98282 1.59523 1.32076 1.00667 1.28514 1.22232 0.94737 0.92480 1.01596 1.22533 0.99302 1.03444 0.86940 1.67441 1.07668 1.30036 1.15921 0.90573 0.90700 0.90805 0.84434 0.81555 0.73040 0.76328 0.95082 0.96413 0.88688 0.92414 0.93412 0.91093 0.91079 0.90516 0.89672 0.94360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.72 10.16 36.00 0.37 -0.35 16 2 C 0.12 1.31 6.78 -82.58 -0.56 0.75 16 3 C -0.17 -1.81 9.72 -39.45 -0.38 -2.20 16 4 C -0.08 -1.00 8.90 -39.12 -0.35 -1.35 16 5 C 0.10 1.38 6.29 -83.34 -0.52 0.86 16 6 N -0.63 -9.15 4.10 -10.05 -0.04 -9.19 16 7 C 0.51 8.42 7.78 -11.65 -0.09 8.33 16 8 O -0.51 -8.76 13.44 5.46 0.07 -8.68 16 9 C 0.49 9.69 7.85 -11.65 -0.09 9.60 16 10 O -0.53 -11.50 16.14 5.49 0.09 -11.41 16 11 N -0.67 -13.94 5.06 -55.41 -0.28 -14.22 16 12 C 0.26 6.46 2.56 -69.08 -0.18 6.29 16 13 H 0.05 1.51 7.58 -51.93 -0.39 1.12 16 14 C -0.15 -3.57 9.26 37.16 0.34 -3.23 16 15 C -0.54 -13.97 8.73 -34.44 -0.30 -14.27 16 16 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 17 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 18 N -0.88 -24.16 11.32 55.43 0.63 -23.54 16 19 Si 0.90 20.32 29.54 -169.99 -5.02 15.30 16 20 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 21 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 22 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 23 C 0.28 3.66 6.06 -154.75 -0.94 2.73 16 24 N -0.49 -5.65 4.43 -188.75 -0.84 -6.49 16 25 C 0.04 0.35 8.88 60.06 0.53 0.89 16 26 C 0.02 0.26 9.26 60.07 0.56 0.81 16 27 N -0.50 -6.17 8.71 -8.49 -0.07 -6.25 16 28 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.42 8.08 -51.92 -0.42 0.00 16 30 H 0.07 0.54 8.14 -51.92 -0.42 0.12 16 31 H 0.14 1.11 8.06 -52.48 -0.42 0.69 16 32 H 0.17 2.31 5.62 -52.49 -0.29 2.02 16 33 H 0.43 6.01 7.52 -40.82 -0.31 5.71 16 34 H 0.40 7.79 8.01 -40.82 -0.33 7.47 16 35 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.09 2.47 6.07 -51.93 -0.32 2.16 16 38 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 39 H 0.05 0.47 7.69 -51.93 -0.40 0.07 16 40 H 0.07 0.55 8.10 -51.93 -0.42 0.13 16 41 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.08 0.92 6.76 -51.93 -0.35 0.57 16 43 H 0.08 0.74 8.10 -51.93 -0.42 0.32 16 44 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 368.07 15.07 5.55 5.55 Total: -1.00 -29.33 368.07 -7.77 -37.11 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: -6.15 Total: 11.27 kcal Atomic # 6 Polarization: 12.26 SS G_CDS: -1.71 Total: 10.55 kcal Atomic # 7 Polarization: -59.07 SS G_CDS: -0.61 Total: -59.68 kcal Atomic # 8 Polarization: -20.26 SS G_CDS: 0.16 Total: -20.10 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -29.33 -7.77 -37.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000783934931.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.023 kcal (2) G-P(sol) polarization free energy of solvation -29.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds