Wall clock time and date at job start Tue Mar 31 2020 12:41:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38064 * 119.49561 * 2 1 4 4 C 1.38768 * 119.40083 * 180.22747 * 3 2 1 5 5 C 1.38960 * 118.43343 * 359.50335 * 4 3 2 6 6 N 1.39883 * 120.52096 * 180.27577 * 5 4 3 7 7 C 1.34775 * 119.99771 * 334.43328 * 6 5 4 8 8 O 1.21398 * 120.00264 * 4.31619 * 7 6 5 9 9 C 1.49323 * 120.00136 * 184.32288 * 7 6 5 10 10 O 1.21356 * 119.99968 * 359.97438 * 9 7 6 11 11 N 1.34775 * 120.00136 * 180.02562 * 9 7 6 12 12 C 1.46503 * 119.99872 * 179.97438 * 11 9 7 13 13 H 1.08994 * 109.47363 * 35.00243 * 12 11 9 14 14 C 1.52999 * 109.47112 * 274.99953 * 12 11 9 15 15 C 1.50705 * 109.46750 * 155.00148 * 12 11 9 16 16 H 1.07995 * 120.00490 * 359.97438 * 15 12 11 17 17 C 1.37880 * 119.99711 * 180.02562 * 15 12 11 18 18 N 1.31516 * 120.00063 * 359.97438 * 17 15 12 19 19 Si 1.86800 * 120.00007 * 179.97438 * 17 15 12 20 20 H 1.48496 * 109.47298 * 89.99532 * 19 17 15 21 21 H 1.48502 * 109.46925 * 209.99463 * 19 17 15 22 22 H 1.48501 * 109.47089 * 329.99602 * 19 17 15 23 23 C 1.39771 * 118.95805 * 0.24501 * 5 4 3 24 24 N 1.39123 * 119.75135 * 179.97438 * 23 5 4 25 25 C 1.46900 * 111.00301 * 163.32968 * 24 23 5 26 26 C 1.46904 * 111.00330 * 287.28891 * 24 23 5 27 27 N 1.32003 * 119.49760 * 179.71807 * 2 1 3 28 28 H 1.08997 * 109.47489 * 270.27785 * 1 2 3 29 29 H 1.09007 * 109.47288 * 30.28184 * 1 2 3 30 30 H 1.09008 * 109.47117 * 150.27907 * 1 2 3 31 31 H 1.08005 * 120.30495 * 359.97438 * 3 2 1 32 32 H 1.07992 * 120.78895 * 179.77079 * 4 3 2 33 33 H 0.96997 * 119.99981 * 154.43930 * 6 5 4 34 34 H 0.97003 * 119.99839 * 359.97438 * 11 9 7 35 35 H 1.09006 * 109.46876 * 300.00127 * 14 12 11 36 36 H 1.08992 * 109.47199 * 60.00102 * 14 12 11 37 37 H 1.09000 * 109.47278 * 180.02562 * 14 12 11 38 38 H 0.97001 * 119.99947 * 180.02562 * 18 17 15 39 39 H 1.08999 * 109.46722 * 60.00217 * 25 24 23 40 40 H 1.09000 * 109.47106 * 180.02562 * 25 24 23 41 41 H 1.08999 * 109.47000 * 300.00440 * 25 24 23 42 42 H 1.09006 * 109.46820 * 61.45376 * 26 24 23 43 43 H 1.08999 * 109.47277 * 181.45307 * 26 24 23 44 44 H 1.08996 * 109.46881 * 301.45555 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1867 1.2017 0.0000 4 6 3.5744 1.1994 -0.0048 5 6 4.2341 -0.0236 0.0011 6 7 5.6319 -0.0769 0.0024 7 6 6.3457 0.9474 -0.5053 8 8 5.7794 1.9492 -0.8919 9 6 7.8332 0.8500 -0.5925 10 8 8.3994 -0.1512 -0.2057 11 7 8.5470 1.8745 -1.0997 12 6 10.0065 1.7791 -1.1847 13 1 10.2911 0.7508 -1.4071 14 6 10.6238 2.2020 0.1498 15 6 10.5062 2.6865 -2.2793 16 1 9.8067 3.2750 -2.8544 17 6 11.8565 2.7646 -2.5473 18 7 12.7083 2.0476 -1.8473 19 14 12.4759 3.8887 -3.9045 20 1 12.7625 5.2327 -3.3418 21 1 13.7178 3.3215 -4.4887 22 1 11.4398 4.0055 -4.9619 23 6 3.4789 -1.1998 0.0064 24 7 4.1223 -2.4333 0.0118 25 6 3.2010 -3.5059 0.4101 26 6 4.7271 -2.7174 -1.2964 27 7 2.1569 -1.1489 0.0057 28 1 -0.3634 0.0050 1.0276 29 1 -0.3634 0.8875 -0.5182 30 1 -0.3634 -0.8925 -0.5095 31 1 1.6435 2.1352 -0.0004 32 1 4.1287 2.1262 -0.0086 33 1 6.0874 -0.8510 0.3687 34 1 8.0944 2.6750 -1.4085 35 1 10.3392 3.2305 0.3721 36 1 10.2623 1.5458 0.9414 37 1 11.7096 2.1315 0.0864 38 1 13.6583 2.1028 -2.0356 39 1 2.3685 -3.5491 -0.2922 40 1 3.7298 -4.4591 0.4064 41 1 2.8213 -3.3054 1.4119 42 1 5.4753 -1.9579 -1.5235 43 1 5.2012 -3.6986 -1.2722 44 1 3.9536 -2.7065 -2.0643 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000783934931.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:46 Heat of formation + Delta-G solvation = -33.781796 kcal Electronic energy + Delta-G solvation = -26879.022427 eV Core-core repulsion = 23024.360085 eV Total energy + Delta-G solvation = -3854.662342 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.49198 -41.27411 -39.70258 -38.16035 -37.12168 -36.31046 -34.35792 -32.85029 -32.46379 -31.09833 -28.97498 -28.28995 -27.38250 -26.49502 -25.41760 -23.71406 -22.67640 -22.25612 -21.28269 -20.30220 -18.73119 -18.25463 -17.97264 -17.55210 -17.21614 -17.14690 -16.62944 -16.39749 -15.93861 -15.52051 -15.27607 -15.13418 -14.99776 -14.82445 -14.44554 -14.34963 -13.77660 -13.64935 -13.48303 -13.21701 -13.09115 -13.05186 -12.91592 -12.89375 -12.78640 -12.72762 -12.53156 -12.31059 -12.14109 -11.97706 -11.16395 -11.06232 -10.84895 -10.64879 -10.47263 -10.00953 -9.97286 -8.96117 -8.20726 -6.38078 -0.27401 0.14873 0.49820 1.21593 1.45678 1.46629 1.57078 2.07569 2.37978 2.40709 2.64430 2.73240 3.10252 3.35809 3.42750 3.79400 3.91334 4.01274 4.18180 4.27472 4.37551 4.53175 4.65180 4.67862 4.69809 4.80803 4.83935 4.87710 4.88280 4.95221 5.01072 5.01417 5.11711 5.23834 5.29255 5.42025 5.50828 5.58459 5.64087 5.73508 5.89681 6.02884 6.06349 6.43969 6.63432 6.72241 6.87652 7.04629 7.34212 8.85422 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.022215 B = 0.002761 C = 0.002602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.111208 B =10139.358261 C =10759.342132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.121 3.879 3 C -0.165 4.165 4 C -0.085 4.085 5 C 0.072 3.928 6 N -0.618 5.618 7 C 0.517 3.483 8 O -0.514 6.514 9 C 0.496 3.504 10 O -0.554 6.554 11 N -0.668 5.668 12 C 0.269 3.731 13 H 0.016 0.984 14 C -0.137 4.137 15 C -0.553 4.553 16 H 0.071 0.929 17 C 0.020 3.980 18 N -0.913 5.913 19 Si 0.971 3.029 20 H -0.271 1.271 21 H -0.284 1.284 22 H -0.267 1.267 23 C 0.278 3.722 24 N -0.497 5.497 25 C 0.040 3.960 26 C 0.028 3.972 27 N -0.507 5.507 28 H 0.090 0.910 29 H 0.097 0.903 30 H 0.073 0.927 31 H 0.168 0.832 32 H 0.157 0.843 33 H 0.431 0.569 34 H 0.411 0.589 35 H 0.040 0.960 36 H 0.020 0.980 37 H 0.073 0.927 38 H 0.268 0.732 39 H 0.045 0.955 40 H 0.090 0.910 41 H 0.066 0.934 42 H 0.058 0.942 43 H 0.104 0.896 44 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.240 -5.491 3.731 24.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.018 4.018 3 C -0.185 4.185 4 C -0.113 4.113 5 C -0.027 4.027 6 N -0.264 5.264 7 C 0.299 3.701 8 O -0.390 6.390 9 C 0.276 3.724 10 O -0.434 6.434 11 N -0.318 5.318 12 C 0.167 3.833 13 H 0.034 0.966 14 C -0.196 4.196 15 C -0.591 4.591 16 H 0.089 0.911 17 C -0.181 4.181 18 N -0.550 5.550 19 Si 0.796 3.204 20 H -0.197 1.197 21 H -0.209 1.209 22 H -0.191 1.191 23 C 0.044 3.956 24 N -0.217 5.217 25 C -0.106 4.106 26 C -0.119 4.119 27 N -0.221 5.221 28 H 0.109 0.891 29 H 0.115 0.885 30 H 0.092 0.908 31 H 0.186 0.814 32 H 0.175 0.825 33 H 0.271 0.729 34 H 0.247 0.753 35 H 0.059 0.941 36 H 0.039 0.961 37 H 0.092 0.908 38 H 0.077 0.923 39 H 0.063 0.937 40 H 0.109 0.891 41 H 0.085 0.915 42 H 0.077 0.923 43 H 0.123 0.877 44 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -23.008 -6.337 4.060 24.208 hybrid contribution 0.861 1.060 -0.961 1.670 sum -22.147 -5.276 3.099 22.977 Atomic orbital electron populations 1.20769 0.85970 1.04411 1.04135 1.21701 0.98531 0.87388 0.94192 1.22151 0.93198 1.00591 1.02577 1.22125 0.95548 0.97678 0.95928 1.18456 0.82511 0.94546 1.07231 1.42936 1.04335 1.21777 1.57388 1.20286 0.88225 0.83543 0.78022 1.90649 1.71359 1.30087 1.46917 1.20029 0.87621 0.84496 0.80257 1.90727 1.72219 1.31230 1.49194 1.46250 1.09363 1.17874 1.58291 1.18621 0.73584 0.96625 0.94493 0.96645 1.21935 1.03225 0.98457 0.95960 1.21490 0.93196 1.26453 1.17932 0.91107 1.25722 0.96646 0.96989 0.98698 1.70018 1.03144 1.40874 1.41005 0.85351 0.77685 0.78580 0.78782 1.19656 1.20934 1.19112 1.19655 0.87972 0.90071 0.97876 1.59541 1.32531 1.00793 1.28818 1.22258 0.94581 0.92665 1.01127 1.22520 0.98853 1.03876 0.86608 1.67564 1.07243 1.30879 1.16453 0.89114 0.88468 0.90779 0.81411 0.82536 0.72930 0.75338 0.94077 0.96072 0.90787 0.92302 0.93672 0.89144 0.91470 0.92281 0.87715 0.94388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.08 10.16 71.24 0.72 -0.36 16 2 C 0.12 2.34 6.78 42.49 0.29 2.63 16 3 C -0.16 -3.19 9.72 22.36 0.22 -2.97 16 4 C -0.09 -2.16 8.90 22.57 0.20 -1.96 16 5 C 0.07 1.95 6.29 38.40 0.24 2.19 16 6 N -0.62 -17.98 4.10 -304.06 -1.25 -19.23 16 7 C 0.52 17.33 7.78 87.23 0.68 18.01 16 8 O -0.51 -17.66 13.44 -3.40 -0.05 -17.71 16 9 C 0.50 19.81 7.85 87.23 0.68 20.49 16 10 O -0.55 -24.65 16.14 -3.27 -0.05 -24.71 16 11 N -0.67 -28.37 5.06 -447.56 -2.27 -30.63 16 12 C 0.27 13.60 2.56 44.25 0.11 13.71 16 13 H 0.02 0.91 7.58 -2.39 -0.02 0.89 16 14 C -0.14 -6.71 9.26 71.98 0.67 -6.04 16 15 C -0.55 -28.92 8.73 25.60 0.22 -28.70 16 16 H 0.07 3.53 7.74 -2.91 -0.02 3.51 16 17 C 0.02 1.07 5.30 84.66 0.45 1.52 16 18 N -0.91 -50.74 11.32 21.45 0.24 -50.50 16 19 Si 0.97 41.46 29.54 68.60 2.03 43.49 16 20 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 21 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 22 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 23 C 0.28 7.01 6.06 133.21 0.81 7.82 16 24 N -0.50 -11.11 4.43 -751.07 -3.33 -14.44 16 25 C 0.04 0.72 8.88 127.69 1.13 1.85 16 26 C 0.03 0.57 9.26 127.69 1.18 1.75 16 27 N -0.51 -11.82 8.71 -180.76 -1.57 -13.39 16 28 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.10 0.70 8.08 -2.38 -0.02 0.68 16 30 H 0.07 0.87 8.14 -2.38 -0.02 0.85 16 31 H 0.17 2.14 8.06 -2.91 -0.02 2.12 16 32 H 0.16 4.27 5.62 -2.91 -0.02 4.26 16 33 H 0.43 12.23 7.52 -92.71 -0.70 11.54 16 34 H 0.41 15.97 8.01 -92.71 -0.74 15.23 16 35 H 0.04 1.87 8.14 -2.38 -0.02 1.85 16 36 H 0.02 0.96 8.14 -2.39 -0.02 0.95 16 37 H 0.07 3.95 6.07 -2.39 -0.01 3.93 16 38 H 0.27 14.06 8.31 -92.71 -0.77 13.29 16 39 H 0.04 0.83 7.69 -2.39 -0.02 0.81 16 40 H 0.09 1.23 8.10 -2.39 -0.02 1.21 16 41 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 42 H 0.06 1.42 6.76 -2.38 -0.02 1.41 16 43 H 0.10 1.70 8.10 -2.39 -0.02 1.68 16 44 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 Total: -1.00 -63.29 368.07 0.97 -62.32 By element: Atomic # 1 Polarization: 35.24 SS G_CDS: -0.39 Total: 34.85 kcal Atomic # 6 Polarization: 22.33 SS G_CDS: 7.61 Total: 29.94 kcal Atomic # 7 Polarization: -120.01 SS G_CDS: -8.18 Total: -128.19 kcal Atomic # 8 Polarization: -42.32 SS G_CDS: -0.10 Total: -42.41 kcal Atomic # 14 Polarization: 41.46 SS G_CDS: 2.03 Total: 43.49 kcal Total: -63.29 0.97 -62.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000783934931.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.542 kcal (2) G-P(sol) polarization free energy of solvation -63.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds