Wall clock time and date at job start Tue Mar 31 2020 12:41:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38073 * 119.49604 * 2 1 4 4 C 1.38772 * 119.39360 * 180.22800 * 3 2 1 5 5 C 1.38952 * 118.43962 * 359.49985 * 4 3 2 6 6 N 1.39887 * 120.51793 * 180.27214 * 5 4 3 7 7 C 1.34771 * 120.00183 * 334.46777 * 6 5 4 8 8 O 1.21397 * 120.00127 * 4.30951 * 7 6 5 9 9 C 1.49325 * 120.00044 * 184.31782 * 7 6 5 10 10 O 1.21361 * 119.99953 * 359.97438 * 9 7 6 11 11 N 1.34781 * 120.00035 * 179.97438 * 9 7 6 12 12 C 1.46492 * 119.99738 * 179.97438 * 11 9 7 13 13 C 1.53005 * 109.46918 * 179.97438 * 12 11 9 14 14 C 1.50706 * 109.47158 * 179.97438 * 13 12 11 15 15 H 1.07999 * 119.99971 * 0.02562 * 14 13 12 16 16 C 1.37872 * 119.99847 * 179.97438 * 14 13 12 17 17 N 1.31508 * 120.00250 * 0.02562 * 16 14 13 18 18 Si 1.86807 * 119.99860 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47086 * 90.00257 * 18 16 14 20 20 H 1.48501 * 109.46875 * 210.00219 * 18 16 14 21 21 H 1.48504 * 109.46989 * 329.99823 * 18 16 14 22 22 C 1.39773 * 118.95859 * 0.24866 * 5 4 3 23 23 N 1.39131 * 119.74848 * 179.97438 * 22 5 4 24 24 C 1.46902 * 110.99649 * 163.33388 * 23 22 5 25 25 C 1.46892 * 110.99964 * 287.28869 * 23 22 5 26 26 N 1.32008 * 119.49820 * 179.71609 * 2 1 3 27 27 H 1.08996 * 109.47551 * 270.28119 * 1 2 3 28 28 H 1.08999 * 109.46951 * 30.28188 * 1 2 3 29 29 H 1.08993 * 109.47018 * 150.27503 * 1 2 3 30 30 H 1.07997 * 120.30207 * 359.97438 * 3 2 1 31 31 H 1.08005 * 120.77888 * 179.77183 * 4 3 2 32 32 H 0.97001 * 119.99594 * 154.46104 * 6 5 4 33 33 H 0.97003 * 119.99992 * 359.97438 * 11 9 7 34 34 H 1.09006 * 109.47556 * 299.99570 * 12 11 9 35 35 H 1.08999 * 109.47610 * 60.00214 * 12 11 9 36 36 H 1.08994 * 109.46961 * 299.99805 * 13 12 11 37 37 H 1.09000 * 109.47229 * 60.00572 * 13 12 11 38 38 H 0.97008 * 120.00516 * 179.97438 * 17 16 14 39 39 H 1.09002 * 109.47030 * 60.00420 * 24 23 22 40 40 H 1.09002 * 109.46665 * 180.02562 * 24 23 22 41 41 H 1.08998 * 109.47273 * 300.00007 * 24 23 22 42 42 H 1.09011 * 109.47393 * 61.52194 * 25 23 22 43 43 H 1.09003 * 109.47364 * 181.51724 * 25 23 22 44 44 H 1.09000 * 109.47844 * 301.51634 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1868 1.2018 0.0000 4 6 3.5745 1.1993 -0.0048 5 6 4.2341 -0.0237 0.0012 6 7 5.6319 -0.0769 0.0024 7 6 6.3458 0.9476 -0.5048 8 8 5.7794 1.9495 -0.8909 9 6 7.8333 0.8502 -0.5919 10 8 8.3995 -0.1513 -0.2056 11 7 8.5471 1.8746 -1.0996 12 6 10.0064 1.7792 -1.1846 13 6 10.5670 3.0659 -1.7939 14 6 12.0683 2.9681 -1.8807 15 1 12.5723 2.0772 -1.5362 16 6 12.7984 4.0156 -2.4010 17 7 12.1848 5.1003 -2.8209 18 14 14.6594 3.8941 -2.5092 19 1 15.0416 3.3039 -3.8172 20 1 15.2519 5.2502 -2.3859 21 1 15.1639 3.0317 -1.4106 22 6 3.4789 -1.1998 0.0065 23 7 4.1224 -2.4334 0.0119 24 6 3.2010 -3.5060 0.4101 25 6 4.7272 -2.7175 -1.2962 26 7 2.1570 -1.1489 0.0057 27 1 -0.3634 0.0050 1.0276 28 1 -0.3633 0.8874 -0.5182 29 1 -0.3633 -0.8924 -0.5095 30 1 1.6435 2.1351 -0.0004 31 1 4.1288 2.1262 -0.0086 32 1 6.0875 -0.8511 0.3684 33 1 8.0945 2.6749 -1.4088 34 1 10.4203 1.6395 -0.1859 35 1 10.2793 0.9313 -1.8128 36 1 10.1532 3.2052 -2.7926 37 1 10.2943 3.9141 -1.1660 38 1 12.6985 5.8375 -3.1866 39 1 2.3685 -3.5492 -0.2922 40 1 3.7298 -4.4591 0.4064 41 1 2.8211 -3.3054 1.4119 42 1 5.4762 -1.9586 -1.5228 43 1 5.2003 -3.6992 -1.2723 44 1 3.9540 -2.7055 -2.0644 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000784865221.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:37 Heat of formation + Delta-G solvation = -40.681685 kcal Electronic energy + Delta-G solvation = -26247.176421 eV Core-core repulsion = 22392.214878 eV Total energy + Delta-G solvation = -3854.961543 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.53582 -41.33691 -39.76554 -38.16714 -37.08083 -36.27451 -34.83103 -32.87672 -32.47746 -31.71035 -29.02666 -28.37262 -27.37266 -26.13650 -25.11101 -23.57529 -22.80151 -22.44790 -21.47135 -20.09752 -18.65002 -18.46514 -17.98317 -17.77786 -17.39174 -16.93142 -16.56792 -16.47912 -16.15422 -15.89736 -15.46892 -15.20697 -15.02761 -14.97664 -14.60464 -14.36780 -14.29598 -13.65578 -13.50568 -13.26842 -13.21707 -13.07901 -12.95061 -12.90337 -12.73387 -12.67755 -12.52108 -12.28945 -12.00023 -11.69246 -11.44923 -11.10472 -10.86675 -10.61823 -10.52984 -10.24781 -9.99918 -8.97903 -8.23514 -6.34425 -0.31560 0.13398 0.42299 1.09815 1.43704 1.43882 1.55334 1.96311 2.37014 2.39735 2.51215 2.71024 3.11730 3.23713 3.36901 3.77919 3.90091 3.99713 4.17336 4.28288 4.36589 4.37571 4.45232 4.53151 4.63582 4.67777 4.80784 4.81295 4.82841 4.86391 4.94217 5.01815 5.02526 5.10355 5.22533 5.42040 5.49478 5.55121 5.63184 5.71386 5.79392 6.04550 6.12530 6.22484 6.52870 6.76715 6.82814 6.86673 7.35174 8.88399 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.025941 B = 0.002274 C = 0.002125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.111741 B =12308.031812 C =13174.218326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.122 3.878 3 C -0.166 4.166 4 C -0.085 4.085 5 C 0.071 3.929 6 N -0.616 5.616 7 C 0.515 3.485 8 O -0.514 6.514 9 C 0.506 3.494 10 O -0.541 6.541 11 N -0.683 5.683 12 C 0.138 3.862 13 C 0.018 3.982 14 C -0.544 4.544 15 H 0.065 0.935 16 C 0.005 3.995 17 N -0.928 5.928 18 Si 0.966 3.034 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.263 1.263 22 C 0.279 3.721 23 N -0.495 5.495 24 C 0.040 3.960 25 C 0.027 3.973 26 N -0.509 5.509 27 H 0.090 0.910 28 H 0.096 0.904 29 H 0.073 0.927 30 H 0.167 0.833 31 H 0.158 0.842 32 H 0.432 0.568 33 H 0.416 0.584 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.008 0.992 37 H 0.009 0.991 38 H 0.265 0.735 39 H 0.043 0.957 40 H 0.091 0.909 41 H 0.066 0.934 42 H 0.061 0.939 43 H 0.105 0.895 44 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.086 -13.536 6.029 28.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.017 4.017 3 C -0.186 4.186 4 C -0.113 4.113 5 C -0.028 4.028 6 N -0.263 5.263 7 C 0.297 3.703 8 O -0.390 6.390 9 C 0.286 3.714 10 O -0.420 6.420 11 N -0.335 5.335 12 C 0.015 3.985 13 C -0.019 4.019 14 C -0.582 4.582 15 H 0.083 0.917 16 C -0.194 4.194 17 N -0.567 5.567 18 Si 0.791 3.209 19 H -0.198 1.198 20 H -0.208 1.208 21 H -0.188 1.188 22 C 0.046 3.954 23 N -0.215 5.215 24 C -0.107 4.107 25 C -0.119 4.119 26 N -0.223 5.223 27 H 0.109 0.891 28 H 0.115 0.885 29 H 0.092 0.908 30 H 0.184 0.816 31 H 0.175 0.825 32 H 0.273 0.727 33 H 0.253 0.747 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.027 0.973 37 H 0.027 0.973 38 H 0.074 0.926 39 H 0.062 0.938 40 H 0.110 0.890 41 H 0.085 0.915 42 H 0.080 0.920 43 H 0.124 0.876 44 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -24.028 -14.183 6.274 28.598 hybrid contribution 1.083 1.047 -0.658 1.644 sum -22.944 -13.136 5.616 27.029 Atomic orbital electron populations 1.20772 0.86080 1.04405 1.04133 1.21684 0.98492 0.87398 0.94094 1.22151 0.93319 1.00548 1.02619 1.22130 0.95513 0.97768 0.95848 1.18402 0.82559 0.94404 1.07392 1.42906 1.04272 1.21763 1.57337 1.20210 0.88211 0.83593 0.78286 1.90691 1.71353 1.30104 1.46824 1.19907 0.87624 0.84129 0.79745 1.90756 1.72075 1.30691 1.48443 1.46033 1.08752 1.18779 1.59890 1.21520 0.76201 0.99863 1.00903 1.19182 0.95509 0.91828 0.95410 1.21449 0.92508 1.02480 1.41776 0.91659 1.25905 1.03946 0.94849 0.94711 1.70070 1.37728 1.06554 1.42394 0.85421 0.79053 0.77513 0.78911 1.19816 1.20837 1.18761 1.19674 0.87917 0.90150 0.97689 1.59567 1.32425 1.00676 1.28839 1.22261 0.94613 0.92735 1.01091 1.22535 0.98877 1.03992 0.86511 1.67566 1.07400 1.30856 1.16500 0.89125 0.88525 0.90764 0.81558 0.82498 0.72738 0.74743 0.91798 0.91784 0.97341 0.97309 0.92590 0.93780 0.89038 0.91540 0.91984 0.87618 0.94553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.00 10.16 71.24 0.72 -0.28 16 2 C 0.12 2.19 6.78 42.49 0.29 2.48 16 3 C -0.17 -2.97 9.72 22.36 0.22 -2.75 16 4 C -0.09 -1.97 8.90 22.57 0.20 -1.77 16 5 C 0.07 1.74 6.29 38.40 0.24 1.98 16 6 N -0.62 -15.32 4.10 -304.07 -1.25 -16.57 16 7 C 0.51 14.76 7.78 87.23 0.68 15.43 16 8 O -0.51 -15.80 13.44 -3.39 -0.05 -15.85 16 9 C 0.51 16.48 7.88 87.23 0.69 17.16 16 10 O -0.54 -19.36 16.48 -3.28 -0.05 -19.42 16 11 N -0.68 -23.73 5.55 -464.54 -2.58 -26.31 16 12 C 0.14 5.57 5.61 86.38 0.48 6.05 16 13 C 0.02 0.90 5.09 29.85 0.15 1.05 16 14 C -0.54 -29.51 9.11 25.60 0.23 -29.28 16 15 H 0.07 3.40 7.74 -2.91 -0.02 3.38 16 16 C 0.00 0.26 5.46 84.65 0.46 0.72 16 17 N -0.93 -54.22 13.29 21.44 0.28 -53.94 16 18 Si 0.97 42.92 29.54 68.60 2.03 44.95 16 19 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 20 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 21 H -0.26 -11.22 7.11 99.48 0.71 -10.52 16 22 C 0.28 6.35 6.06 133.21 0.81 7.15 16 23 N -0.50 -9.63 4.44 -751.07 -3.33 -12.96 16 24 C 0.04 0.62 8.87 127.69 1.13 1.75 16 25 C 0.03 0.47 9.26 127.69 1.18 1.65 16 26 N -0.51 -10.96 8.71 -180.75 -1.57 -12.54 16 27 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.10 0.62 8.08 -2.39 -0.02 0.60 16 29 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.17 1.95 8.06 -2.91 -0.02 1.93 16 31 H 0.16 3.94 5.62 -2.91 -0.02 3.92 16 32 H 0.43 10.18 7.52 -92.71 -0.70 9.48 16 33 H 0.42 13.75 7.94 -92.71 -0.74 13.01 16 34 H 0.06 2.60 8.14 -2.38 -0.02 2.58 16 35 H 0.06 2.60 8.14 -2.39 -0.02 2.58 16 36 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 37 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 38 H 0.27 14.60 8.31 -92.70 -0.77 13.83 16 39 H 0.04 0.72 7.69 -2.39 -0.02 0.71 16 40 H 0.09 1.03 8.10 -2.39 -0.02 1.01 16 41 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.06 1.24 6.76 -2.38 -0.02 1.22 16 43 H 0.11 1.36 8.10 -2.39 -0.02 1.34 16 44 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 Total: -1.00 -65.40 372.88 0.58 -64.82 By element: Atomic # 1 Polarization: 26.84 SS G_CDS: -0.39 Total: 26.45 kcal Atomic # 6 Polarization: 13.87 SS G_CDS: 7.49 Total: 21.36 kcal Atomic # 7 Polarization: -113.86 SS G_CDS: -8.45 Total: -122.31 kcal Atomic # 8 Polarization: -35.17 SS G_CDS: -0.10 Total: -35.27 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.95 kcal Total: -65.40 0.58 -64.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784865221.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.141 kcal (2) G-P(sol) polarization free energy of solvation -65.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds