Wall clock time and date at job start Tue Mar 31 2020 12:40:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38756 * 120.06765 * 2 1 4 4 N 1.39939 * 120.03980 * 359.97438 * 3 2 1 5 5 C 1.34780 * 120.00598 * 145.22959 * 4 3 2 6 6 O 1.21586 * 119.99712 * 4.52905 * 5 4 3 7 7 N 1.34773 * 120.00257 * 184.52972 * 5 4 3 8 8 C 1.46503 * 119.99940 * 179.97438 * 7 5 4 9 9 C 1.50702 * 109.46872 * 180.02562 * 8 7 5 10 10 H 1.08001 * 120.00345 * 0.02562 * 9 8 7 11 11 C 1.37875 * 119.99685 * 180.02562 * 9 8 7 12 12 N 1.31519 * 119.99882 * 180.02562 * 11 9 8 13 13 Si 1.86800 * 120.00184 * 0.02562 * 11 9 8 14 14 H 1.48500 * 109.46933 * 90.00147 * 13 11 9 15 15 H 1.48503 * 109.47044 * 210.00114 * 13 11 9 16 16 H 1.48498 * 109.47174 * 330.00206 * 13 11 9 17 17 C 1.38897 * 119.92913 * 179.97438 * 3 2 1 18 18 C 1.38181 * 120.07101 * 0.02562 * 17 3 2 19 19 C 1.38145 * 120.13766 * 359.97438 * 18 17 3 20 20 C 1.38721 * 120.06826 * 179.71877 * 2 1 3 21 21 N 1.39950 * 120.03277 * 0.02926 * 20 2 1 22 22 C 1.34776 * 119.99607 * 214.51508 * 21 20 2 23 23 O 1.21588 * 120.00280 * 355.51368 * 22 21 20 24 24 N 1.34777 * 119.99680 * 175.51476 * 22 21 20 25 25 C 1.46495 * 119.99736 * 185.35220 * 24 22 21 26 26 C 1.46498 * 120.00278 * 5.34734 * 24 22 21 27 27 H 1.08997 * 109.46609 * 90.00116 * 1 2 3 28 28 H 1.09001 * 109.47262 * 209.99909 * 1 2 3 29 29 H 1.08999 * 109.46957 * 330.00332 * 1 2 3 30 30 H 0.97007 * 119.99981 * 325.22595 * 4 3 2 31 31 H 0.97004 * 120.00158 * 0.02562 * 7 5 4 32 32 H 1.08995 * 109.47225 * 300.00420 * 8 7 5 33 33 H 1.08996 * 109.46710 * 60.00587 * 8 7 5 34 34 H 0.97003 * 119.99827 * 179.97438 * 12 11 9 35 35 H 1.08004 * 119.96958 * 179.97438 * 17 3 2 36 36 H 1.08002 * 119.93429 * 179.97438 * 18 17 3 37 37 H 1.07992 * 119.96604 * 180.02562 * 19 18 17 38 38 H 0.97000 * 119.99937 * 34.51904 * 21 20 2 39 39 H 1.09001 * 109.47580 * 89.99997 * 25 24 22 40 40 H 1.09002 * 109.47301 * 209.99970 * 25 24 22 41 41 H 1.08998 * 109.47298 * 329.99745 * 25 24 22 42 42 H 1.08997 * 109.46748 * 5.26726 * 26 24 22 43 43 H 1.08997 * 109.46768 * 125.25948 * 26 24 22 44 44 H 1.08996 * 109.47289 * 245.26678 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2023 1.2008 0.0000 4 7 1.5049 2.4141 -0.0005 5 6 1.9999 3.4764 0.6650 6 8 3.0911 3.4060 1.1967 7 7 1.2854 4.6166 0.7412 8 6 1.8233 5.7711 1.4652 9 6 0.8365 6.9083 1.4013 10 1 -0.0980 6.7835 0.8745 11 6 1.1268 8.1082 2.0153 12 7 0.2655 9.1005 1.9600 13 14 2.7435 8.3244 2.9259 14 1 3.7743 8.8390 1.9889 15 1 2.5595 9.2904 4.0386 16 1 3.1819 7.0157 3.4739 17 6 3.5912 1.1975 0.0005 18 6 4.2807 0.0000 0.0005 19 6 3.5915 -1.1972 0.0005 20 6 2.2021 -1.2005 0.0059 21 7 1.5045 -2.4137 0.0112 22 6 2.0021 -3.4742 0.6778 23 8 3.0950 -3.4022 1.2058 24 7 1.2883 -4.6145 0.7590 25 6 1.7744 -5.7260 1.5802 26 6 0.0262 -4.7424 0.0262 27 1 -0.3632 0.0000 -1.0277 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5138 30 1 0.6651 2.4905 -0.4800 31 1 0.4147 4.6726 0.3173 32 1 1.9964 5.4987 2.5062 33 1 2.7640 6.0798 1.0091 34 1 0.4695 9.9445 2.3924 35 1 4.1330 2.1318 0.0001 36 1 5.3608 0.0000 0.0005 37 1 4.1331 -2.1315 0.0010 38 1 0.6629 -2.4914 -0.4648 39 1 1.3865 -5.6257 2.5939 40 1 1.4344 -6.6693 1.1528 41 1 2.8640 -5.7101 1.6049 42 1 -0.1233 -3.8605 -0.5966 43 1 0.0607 -5.6308 -0.6043 44 1 -0.7977 -4.8310 0.7343 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000791913079.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:55 Heat of formation + Delta-G solvation = -8.204248 kcal Electronic energy + Delta-G solvation = -26341.669818 eV Core-core repulsion = 22488.116602 eV Total energy + Delta-G solvation = -3853.553216 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.14116 -40.14802 -38.52354 -36.02691 -35.40320 -34.30478 -34.23133 -32.41285 -31.92470 -29.34258 -28.39622 -27.67273 -26.80850 -26.11307 -23.30094 -21.97204 -21.40615 -20.63190 -20.00652 -18.91959 -18.24044 -17.84034 -16.55418 -16.37630 -16.17837 -15.62356 -15.48186 -14.94893 -14.75277 -14.49421 -14.38114 -14.07294 -13.96517 -13.64474 -13.33932 -13.18488 -13.13077 -13.01483 -12.61338 -12.49516 -12.42800 -12.32925 -12.07804 -11.64256 -11.28917 -11.00835 -10.83504 -10.65683 -10.31990 -9.97551 -9.81734 -9.57070 -9.46550 -9.16518 -8.79909 -8.32306 -8.15086 -7.68651 -6.22792 -4.25282 1.36353 1.49053 2.17445 2.82126 3.05958 3.27443 3.34674 3.43101 3.43263 3.58777 3.98461 4.32937 4.45795 4.74893 4.76181 4.79358 4.82667 4.92066 5.06403 5.12808 5.16989 5.20546 5.37272 5.40386 5.46563 5.60021 5.62467 5.71850 5.88317 5.94034 6.20166 6.31856 6.42759 6.53788 6.71815 6.72595 6.78376 7.06955 7.16539 7.24004 7.30643 7.45188 7.47915 8.16564 8.22843 8.57115 8.75796 9.05307 9.37329 10.88976 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.027054 B = 0.002356 C = 0.002275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.718496 B =11880.798220 C =12303.715319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.148 4.148 3 C 0.195 3.805 4 N -0.691 5.691 5 C 0.693 3.307 6 O -0.583 6.583 7 N -0.716 5.716 8 C 0.237 3.763 9 C -0.544 4.544 10 H 0.080 0.920 11 C 0.078 3.922 12 N -0.892 5.892 13 Si 0.877 3.123 14 H -0.273 1.273 15 H -0.283 1.283 16 H -0.260 1.260 17 C -0.131 4.131 18 C -0.089 4.089 19 C -0.139 4.139 20 C 0.172 3.828 21 N -0.681 5.681 22 C 0.704 3.296 23 O -0.567 6.567 24 N -0.637 5.637 25 C 0.102 3.898 26 C 0.079 3.921 27 H 0.068 0.932 28 H 0.062 0.938 29 H 0.071 0.929 30 H 0.403 0.597 31 H 0.394 0.606 32 H 0.025 0.975 33 H 0.021 0.979 34 H 0.268 0.732 35 H 0.144 0.856 36 H 0.126 0.874 37 H 0.137 0.863 38 H 0.403 0.597 39 H 0.054 0.946 40 H 0.070 0.930 41 H 0.080 0.920 42 H 0.069 0.931 43 H 0.068 0.932 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.546 -29.253 -7.646 30.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.154 4.154 3 C 0.098 3.902 4 N -0.339 5.339 5 C 0.393 3.607 6 O -0.460 6.460 7 N -0.367 5.367 8 C 0.115 3.885 9 C -0.582 4.582 10 H 0.098 0.902 11 C -0.126 4.126 12 N -0.529 5.529 13 Si 0.703 3.297 14 H -0.198 1.198 15 H -0.209 1.209 16 H -0.184 1.184 17 C -0.152 4.152 18 C -0.109 4.109 19 C -0.160 4.160 20 C 0.077 3.923 21 N -0.331 5.331 22 C 0.406 3.594 23 O -0.443 6.443 24 N -0.376 5.376 25 C -0.041 4.041 26 C -0.065 4.065 27 H 0.086 0.914 28 H 0.081 0.919 29 H 0.090 0.910 30 H 0.239 0.761 31 H 0.227 0.773 32 H 0.043 0.957 33 H 0.039 0.961 34 H 0.078 0.922 35 H 0.162 0.838 36 H 0.144 0.856 37 H 0.155 0.845 38 H 0.242 0.758 39 H 0.072 0.928 40 H 0.088 0.912 41 H 0.099 0.901 42 H 0.088 0.912 43 H 0.087 0.913 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.856 -28.997 -6.628 29.757 hybrid contribution -0.712 0.281 -0.140 0.778 sum -1.568 -28.716 -6.768 29.544 Atomic orbital electron populations 1.20626 0.91073 1.03210 1.01909 1.19223 0.95765 0.90622 1.09808 1.17002 0.90950 0.83459 0.98805 1.42691 1.26638 1.09523 1.55015 1.16108 0.84644 0.80330 0.79601 1.90877 1.20563 1.82680 1.51915 1.45438 1.21605 1.12123 1.57579 1.19425 0.95099 0.82312 0.91660 1.21064 1.04792 0.95810 1.36521 0.90249 1.24779 0.97073 0.95345 0.95407 1.69879 1.35571 1.03799 1.43665 0.86813 0.83811 0.79012 0.80056 1.19802 1.20901 1.18392 1.21417 0.92675 0.99665 1.01426 1.20932 0.99892 0.91333 0.98694 1.21176 0.92262 0.99306 1.03224 1.16912 0.90876 0.82821 1.01683 1.42689 1.26394 1.09521 1.54528 1.15815 0.84019 0.80161 0.79402 1.90946 1.19635 1.82081 1.51589 1.46905 1.23861 1.14881 1.51903 1.21539 1.01519 0.87076 0.93965 1.21780 0.85721 1.02517 0.96469 0.91353 0.91891 0.91010 0.76139 0.77273 0.95672 0.96092 0.92228 0.83794 0.85606 0.84515 0.75803 0.92787 0.91158 0.90134 0.91231 0.91328 0.91759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.99 8.94 36.01 0.32 -0.67 16 2 C -0.15 -1.85 5.91 -104.25 -0.62 -2.47 16 3 C 0.19 2.91 6.28 -83.72 -0.53 2.39 16 4 N -0.69 -10.21 4.75 -14.24 -0.07 -10.28 16 5 C 0.69 13.49 8.41 -86.92 -0.73 12.76 16 6 O -0.58 -13.47 13.76 5.29 0.07 -13.40 16 7 N -0.72 -14.34 5.55 -66.41 -0.37 -14.71 16 8 C 0.24 5.81 4.50 -5.19 -0.02 5.78 16 9 C -0.54 -14.76 9.83 -34.44 -0.34 -15.10 16 10 H 0.08 2.23 7.84 -52.49 -0.41 1.82 16 11 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 12 N -0.89 -26.31 13.96 55.43 0.77 -25.54 16 13 Si 0.88 21.42 27.47 -169.99 -4.67 16.76 16 14 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 15 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 16 H -0.26 -6.34 6.54 56.52 0.37 -5.97 16 17 C -0.13 -2.09 8.69 -39.36 -0.34 -2.44 16 18 C -0.09 -1.26 10.03 -39.64 -0.40 -1.66 16 19 C -0.14 -1.93 8.69 -39.36 -0.34 -2.27 16 20 C 0.17 2.18 6.28 -83.71 -0.53 1.66 16 21 N -0.68 -6.73 4.65 -14.24 -0.07 -6.79 16 22 C 0.70 8.00 8.12 -86.92 -0.71 7.29 16 23 O -0.57 -8.65 13.31 5.29 0.07 -8.58 16 24 N -0.64 -4.90 3.27 -195.35 -0.64 -5.54 16 25 C 0.10 0.64 10.52 59.84 0.63 1.27 16 26 C 0.08 0.29 10.64 59.85 0.64 0.93 16 27 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.49 7.15 -51.93 -0.37 0.12 16 29 H 0.07 0.68 7.17 -51.93 -0.37 0.31 16 30 H 0.40 4.55 7.87 -40.82 -0.32 4.23 16 31 H 0.39 6.79 8.34 -40.82 -0.34 6.45 16 32 H 0.03 0.66 7.20 -51.93 -0.37 0.28 16 33 H 0.02 0.54 7.57 -51.93 -0.39 0.14 16 34 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 35 H 0.14 2.59 6.19 -52.48 -0.33 2.26 16 36 H 0.13 1.53 8.06 -52.49 -0.42 1.10 16 37 H 0.14 1.96 6.20 -52.49 -0.33 1.64 16 38 H 0.40 2.64 5.25 -40.82 -0.21 2.42 16 39 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.07 0.25 8.07 -51.93 -0.42 -0.17 16 41 H 0.08 0.64 7.35 -51.93 -0.38 0.26 16 42 H 0.07 0.18 5.53 -51.93 -0.29 -0.10 16 43 H 0.07 0.15 8.14 -51.93 -0.42 -0.27 16 44 H 0.06 0.18 8.14 -51.93 -0.42 -0.25 16 LS Contribution 360.47 15.07 5.43 5.43 Total: -1.00 -36.04 360.47 -8.34 -44.38 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: -5.82 Total: 8.72 kcal Atomic # 6 Polarization: 12.61 SS G_CDS: -3.06 Total: 9.55 kcal Atomic # 7 Polarization: -62.49 SS G_CDS: -0.37 Total: -62.86 kcal Atomic # 8 Polarization: -22.12 SS G_CDS: 0.14 Total: -21.98 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.67 Total: 16.76 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -36.04 -8.34 -44.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000791913079.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.174 kcal (2) G-P(sol) polarization free energy of solvation -36.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds