Wall clock time and date at job start Tue Mar 31 2020 12:40:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38756 * 120.06765 * 2 1 4 4 N 1.39939 * 120.03980 * 359.97438 * 3 2 1 5 5 C 1.34780 * 120.00598 * 145.22959 * 4 3 2 6 6 O 1.21586 * 119.99712 * 4.52905 * 5 4 3 7 7 N 1.34773 * 120.00257 * 184.52972 * 5 4 3 8 8 C 1.46503 * 119.99940 * 179.97438 * 7 5 4 9 9 C 1.50702 * 109.46872 * 180.02562 * 8 7 5 10 10 H 1.08001 * 120.00345 * 0.02562 * 9 8 7 11 11 C 1.37875 * 119.99685 * 180.02562 * 9 8 7 12 12 N 1.31519 * 119.99882 * 180.02562 * 11 9 8 13 13 Si 1.86800 * 120.00184 * 0.02562 * 11 9 8 14 14 H 1.48500 * 109.46933 * 90.00147 * 13 11 9 15 15 H 1.48503 * 109.47044 * 210.00114 * 13 11 9 16 16 H 1.48498 * 109.47174 * 330.00206 * 13 11 9 17 17 C 1.38897 * 119.92913 * 179.97438 * 3 2 1 18 18 C 1.38181 * 120.07101 * 0.02562 * 17 3 2 19 19 C 1.38145 * 120.13766 * 359.97438 * 18 17 3 20 20 C 1.38721 * 120.06826 * 179.71877 * 2 1 3 21 21 N 1.39950 * 120.03277 * 0.02926 * 20 2 1 22 22 C 1.34776 * 119.99607 * 214.51508 * 21 20 2 23 23 O 1.21588 * 120.00280 * 355.51368 * 22 21 20 24 24 N 1.34777 * 119.99680 * 175.51476 * 22 21 20 25 25 C 1.46495 * 119.99736 * 185.35220 * 24 22 21 26 26 C 1.46498 * 120.00278 * 5.34734 * 24 22 21 27 27 H 1.08997 * 109.46609 * 90.00116 * 1 2 3 28 28 H 1.09001 * 109.47262 * 209.99909 * 1 2 3 29 29 H 1.08999 * 109.46957 * 330.00332 * 1 2 3 30 30 H 0.97007 * 119.99981 * 325.22595 * 4 3 2 31 31 H 0.97004 * 120.00158 * 0.02562 * 7 5 4 32 32 H 1.08995 * 109.47225 * 300.00420 * 8 7 5 33 33 H 1.08996 * 109.46710 * 60.00587 * 8 7 5 34 34 H 0.97003 * 119.99827 * 179.97438 * 12 11 9 35 35 H 1.08004 * 119.96958 * 179.97438 * 17 3 2 36 36 H 1.08002 * 119.93429 * 179.97438 * 18 17 3 37 37 H 1.07992 * 119.96604 * 180.02562 * 19 18 17 38 38 H 0.97000 * 119.99937 * 34.51904 * 21 20 2 39 39 H 1.09001 * 109.47580 * 89.99997 * 25 24 22 40 40 H 1.09002 * 109.47301 * 209.99970 * 25 24 22 41 41 H 1.08998 * 109.47298 * 329.99745 * 25 24 22 42 42 H 1.08997 * 109.46748 * 5.26726 * 26 24 22 43 43 H 1.08997 * 109.46768 * 125.25948 * 26 24 22 44 44 H 1.08996 * 109.47289 * 245.26678 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2023 1.2008 0.0000 4 7 1.5049 2.4141 -0.0005 5 6 1.9999 3.4764 0.6650 6 8 3.0911 3.4060 1.1967 7 7 1.2854 4.6166 0.7412 8 6 1.8233 5.7711 1.4652 9 6 0.8365 6.9083 1.4013 10 1 -0.0980 6.7835 0.8745 11 6 1.1268 8.1082 2.0153 12 7 0.2655 9.1005 1.9600 13 14 2.7435 8.3244 2.9259 14 1 3.7743 8.8390 1.9889 15 1 2.5595 9.2904 4.0386 16 1 3.1819 7.0157 3.4739 17 6 3.5912 1.1975 0.0005 18 6 4.2807 0.0000 0.0005 19 6 3.5915 -1.1972 0.0005 20 6 2.2021 -1.2005 0.0059 21 7 1.5045 -2.4137 0.0112 22 6 2.0021 -3.4742 0.6778 23 8 3.0950 -3.4022 1.2058 24 7 1.2883 -4.6145 0.7590 25 6 1.7744 -5.7260 1.5802 26 6 0.0262 -4.7424 0.0262 27 1 -0.3632 0.0000 -1.0277 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5138 30 1 0.6651 2.4905 -0.4800 31 1 0.4147 4.6726 0.3173 32 1 1.9964 5.4987 2.5062 33 1 2.7640 6.0798 1.0091 34 1 0.4695 9.9445 2.3924 35 1 4.1330 2.1318 0.0001 36 1 5.3608 0.0000 0.0005 37 1 4.1331 -2.1315 0.0010 38 1 0.6629 -2.4914 -0.4648 39 1 1.3865 -5.6257 2.5939 40 1 1.4344 -6.6693 1.1528 41 1 2.8640 -5.7101 1.6049 42 1 -0.1233 -3.8605 -0.5966 43 1 0.0607 -5.6308 -0.6043 44 1 -0.7977 -4.8310 0.7343 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000791913079.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:55 Heat of formation + Delta-G solvation = -34.453449 kcal Electronic energy + Delta-G solvation = -26342.808068 eV Core-core repulsion = 22488.116602 eV Total energy + Delta-G solvation = -3854.691467 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.10904 -41.39642 -39.71170 -36.85695 -36.51461 -36.02275 -35.39539 -34.39047 -32.95421 -30.62437 -29.42351 -28.76102 -27.75015 -26.80112 -24.79177 -23.48505 -22.44569 -22.04871 -21.03293 -20.14330 -19.39227 -18.89526 -18.37780 -17.30450 -17.14442 -16.86978 -16.68628 -16.36934 -16.05406 -15.87453 -15.44984 -15.20047 -14.97058 -14.83845 -14.46124 -14.35569 -14.29793 -14.17160 -13.66313 -13.39034 -13.33658 -13.09092 -13.00930 -12.89859 -12.71725 -12.59816 -12.32196 -11.93301 -11.81282 -11.65330 -11.44110 -11.05590 -10.92055 -10.91210 -10.02037 -9.79712 -9.18619 -8.84845 -8.39350 -6.45958 0.31440 0.33978 1.33910 1.35681 1.40392 1.49364 1.74750 1.93450 2.12187 2.29097 2.80230 2.85551 2.96523 3.34441 3.86752 4.01299 4.15859 4.16800 4.31541 4.47673 4.52114 4.53275 4.54204 4.74215 4.75704 4.78290 4.78775 4.86625 4.95131 5.04321 5.15431 5.22449 5.26002 5.26743 5.37230 5.45015 5.45944 5.54992 5.66231 5.79140 5.95110 6.10271 6.23364 6.55894 6.75178 7.07737 7.20321 7.36620 7.54022 8.75066 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.027054 B = 0.002356 C = 0.002275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.718496 B =11880.798220 C =12303.715319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.135 4.135 3 C 0.173 3.827 4 N -0.668 5.668 5 C 0.695 3.305 6 O -0.621 6.621 7 N -0.712 5.712 8 C 0.251 3.749 9 C -0.544 4.544 10 H 0.063 0.937 11 C 0.028 3.972 12 N -0.930 5.930 13 Si 0.935 3.065 14 H -0.265 1.265 15 H -0.274 1.274 16 H -0.261 1.261 17 C -0.152 4.152 18 C -0.094 4.094 19 C -0.144 4.144 20 C 0.173 3.827 21 N -0.667 5.667 22 C 0.694 3.306 23 O -0.614 6.614 24 N -0.632 5.632 25 C 0.098 3.902 26 C 0.070 3.930 27 H 0.100 0.900 28 H 0.079 0.921 29 H 0.068 0.932 30 H 0.422 0.578 31 H 0.408 0.592 32 H 0.011 0.989 33 H 0.013 0.987 34 H 0.272 0.728 35 H 0.118 0.882 36 H 0.137 0.863 37 H 0.131 0.869 38 H 0.421 0.579 39 H 0.055 0.945 40 H 0.103 0.897 41 H 0.057 0.943 42 H 0.080 0.920 43 H 0.089 0.911 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.143 -31.527 -8.293 32.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.140 4.140 3 C 0.077 3.923 4 N -0.317 5.317 5 C 0.395 3.605 6 O -0.501 6.501 7 N -0.366 5.366 8 C 0.126 3.874 9 C -0.582 4.582 10 H 0.081 0.919 11 C -0.173 4.173 12 N -0.568 5.568 13 Si 0.759 3.241 14 H -0.190 1.190 15 H -0.199 1.199 16 H -0.186 1.186 17 C -0.174 4.174 18 C -0.113 4.113 19 C -0.166 4.166 20 C 0.077 3.923 21 N -0.319 5.319 22 C 0.396 3.604 23 O -0.494 6.494 24 N -0.369 5.369 25 C -0.045 4.045 26 C -0.071 4.071 27 H 0.119 0.881 28 H 0.097 0.903 29 H 0.087 0.913 30 H 0.261 0.739 31 H 0.244 0.756 32 H 0.029 0.971 33 H 0.031 0.969 34 H 0.082 0.918 35 H 0.136 0.864 36 H 0.155 0.845 37 H 0.149 0.851 38 H 0.264 0.736 39 H 0.074 0.926 40 H 0.122 0.878 41 H 0.076 0.924 42 H 0.099 0.901 43 H 0.107 0.893 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.555 -31.347 -7.339 32.296 hybrid contribution -0.292 0.805 0.006 0.857 sum -2.848 -30.542 -7.333 31.539 Atomic orbital electron populations 1.20763 0.88026 1.03870 1.04192 1.19453 0.97774 0.89225 1.07576 1.17164 0.90776 0.84071 1.00283 1.42303 1.27048 1.08321 1.54049 1.16158 0.84010 0.80812 0.79523 1.90862 1.22287 1.83422 1.53577 1.45092 1.22313 1.11499 1.57662 1.19005 0.94129 0.82894 0.91324 1.21250 1.04603 0.96652 1.35715 0.91931 1.25546 1.00145 0.95237 0.96340 1.69973 1.37408 1.04483 1.44962 0.85892 0.80101 0.78899 0.79208 1.18976 1.19898 1.18578 1.21309 0.93549 0.99144 1.03384 1.21025 1.00640 0.90951 0.98675 1.21239 0.93254 0.98747 1.03327 1.16988 0.90651 0.84066 1.00623 1.42503 1.26735 1.08255 1.54395 1.16101 0.83845 0.81168 0.79261 1.90917 1.21875 1.83042 1.53550 1.47060 1.24616 1.13675 1.51548 1.21668 1.00317 0.88062 0.94432 1.22092 0.84026 1.04076 0.96953 0.88109 0.90256 0.91343 0.73867 0.75602 0.97064 0.96938 0.91843 0.86373 0.84471 0.85094 0.73641 0.92590 0.87811 0.92381 0.90104 0.89294 0.90219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.57 8.94 71.24 0.64 -0.93 16 2 C -0.13 -3.08 5.91 -19.62 -0.12 -3.19 16 3 C 0.17 5.05 6.28 38.13 0.24 5.29 16 4 N -0.67 -19.04 4.75 -317.24 -1.51 -20.54 16 5 C 0.69 26.92 8.41 179.05 1.51 28.42 16 6 O -0.62 -29.24 13.76 -3.99 -0.05 -29.30 16 7 N -0.71 -28.29 5.55 -482.30 -2.68 -30.97 16 8 C 0.25 12.28 4.50 85.63 0.38 12.66 16 9 C -0.54 -29.69 9.83 25.60 0.25 -29.44 16 10 H 0.06 3.55 7.84 -2.91 -0.02 3.53 16 11 C 0.03 1.56 5.47 84.65 0.46 2.03 16 12 N -0.93 -55.10 13.96 21.45 0.30 -54.80 16 13 Si 0.94 44.20 27.47 68.60 1.88 46.08 16 14 H -0.26 -12.12 7.11 99.48 0.71 -11.42 16 15 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 16 H -0.26 -12.36 6.54 99.48 0.65 -11.71 16 17 C -0.15 -5.01 8.69 22.41 0.19 -4.82 16 18 C -0.09 -2.72 10.03 22.23 0.22 -2.50 16 19 C -0.14 -4.02 8.69 22.42 0.19 -3.83 16 20 C 0.17 4.12 6.28 38.13 0.24 4.36 16 21 N -0.67 -11.60 4.65 -317.23 -1.48 -13.07 16 22 C 0.69 14.77 8.12 179.05 1.45 16.22 16 23 O -0.61 -18.79 13.31 -3.99 -0.05 -18.84 16 24 N -0.63 -8.20 3.27 -890.21 -2.91 -11.11 16 25 C 0.10 1.06 10.52 127.77 1.34 2.40 16 26 C 0.07 0.24 10.64 127.77 1.36 1.60 16 27 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.08 0.89 7.15 -2.39 -0.02 0.87 16 29 H 0.07 1.06 7.17 -2.39 -0.02 1.05 16 30 H 0.42 8.61 7.87 -92.70 -0.73 7.88 16 31 H 0.41 13.71 8.34 -92.70 -0.77 12.94 16 32 H 0.01 0.59 7.20 -2.39 -0.02 0.58 16 33 H 0.01 0.64 7.57 -2.39 -0.02 0.63 16 34 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 35 H 0.12 4.49 6.19 -2.91 -0.02 4.47 16 36 H 0.14 3.47 8.06 -2.91 -0.02 3.45 16 37 H 0.13 3.83 6.20 -2.91 -0.02 3.81 16 38 H 0.42 3.96 5.25 -92.71 -0.49 3.48 16 39 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 40 H 0.10 0.41 8.07 -2.39 -0.02 0.39 16 41 H 0.06 0.91 7.35 -2.39 -0.02 0.89 16 42 H 0.08 0.09 5.53 -2.39 -0.01 0.07 16 43 H 0.09 0.01 8.14 -2.39 -0.02 -0.01 16 44 H 0.08 0.10 8.14 -2.39 -0.02 0.08 16 Total: -1.00 -80.24 360.47 0.90 -79.34 By element: Atomic # 1 Polarization: 25.91 SS G_CDS: -0.97 Total: 24.93 kcal Atomic # 6 Polarization: 19.91 SS G_CDS: 8.37 Total: 28.28 kcal Atomic # 7 Polarization: -122.22 SS G_CDS: -8.28 Total: -130.50 kcal Atomic # 8 Polarization: -48.03 SS G_CDS: -0.11 Total: -48.14 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 1.88 Total: 46.08 kcal Total: -80.24 0.90 -79.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000791913079.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.885 kcal (2) G-P(sol) polarization free energy of solvation -80.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds