Wall clock time and date at job start Tue Mar 31 2020 13:23:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17407 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.53001 * 109.46862 * 289.25940 * 3 2 1 5 5 C 1.52998 * 109.46986 * 180.02562 * 4 3 2 6 6 H 1.09007 * 109.47036 * 304.99922 * 5 4 3 7 7 O 1.42893 * 109.47512 * 65.00206 * 5 4 3 8 8 C 1.53005 * 109.47105 * 185.00296 * 5 4 3 9 9 N 1.46501 * 109.47036 * 179.97438 * 8 5 4 10 10 C 1.34773 * 120.00026 * 179.97438 * 9 8 5 11 11 O 1.21595 * 119.99822 * 359.97438 * 10 9 8 12 12 N 1.34772 * 120.00158 * 179.97438 * 10 9 8 13 13 C 1.40196 * 120.00000 * 180.02562 * 12 10 9 14 14 C 1.40396 * 125.97439 * 0.27024 * 13 12 10 15 15 C 1.35244 * 107.86945 * 180.17767 * 14 13 12 16 16 C 1.50703 * 126.07226 * 179.88542 * 15 14 13 17 17 N 1.34968 * 107.85703 * 359.61998 * 15 14 13 18 18 C 1.46496 * 125.97396 * 180.24284 * 17 15 14 19 19 C 1.50702 * 109.47079 * 90.00325 * 18 17 15 20 20 H 1.08002 * 120.00024 * 359.97438 * 19 18 17 21 21 C 1.37881 * 120.00327 * 179.97438 * 19 18 17 22 22 N 1.31513 * 119.99450 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00465 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46776 * 59.99591 * 23 21 19 25 25 H 1.48491 * 109.47249 * 179.97438 * 23 21 19 26 26 H 1.48505 * 109.46668 * 299.99903 * 23 21 19 27 27 N 1.31217 * 125.97157 * 180.02562 * 13 12 10 28 28 H 4.44645 * 5.63323 * 179.97438 * 4 1 2 29 29 H 1.09001 * 109.46928 * 169.26276 * 3 2 1 30 30 H 1.08993 * 109.47111 * 49.25663 * 3 2 1 31 31 H 1.09001 * 109.47075 * 60.00426 * 4 3 2 32 32 H 1.08996 * 109.47267 * 300.00250 * 4 3 2 33 33 H 0.96701 * 114.00160 * 59.99491 * 7 5 4 34 34 H 1.08998 * 109.46817 * 59.99982 * 8 5 4 35 35 H 1.08998 * 109.46882 * 299.99922 * 8 5 4 36 36 H 0.97004 * 120.00070 * 359.97438 * 9 8 5 37 37 H 0.97004 * 119.99938 * 0.02562 * 12 10 9 38 38 H 1.08001 * 126.06931 * 0.03580 * 14 13 12 39 39 H 1.09002 * 109.47152 * 269.68666 * 16 15 14 40 40 H 1.09001 * 109.46980 * 149.68766 * 16 15 14 41 41 H 1.09004 * 109.47113 * 29.68747 * 16 15 14 42 42 H 1.08997 * 109.47352 * 209.99655 * 18 17 15 43 43 H 1.09001 * 109.47699 * 330.00018 * 18 17 15 44 44 H 0.97001 * 120.00075 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 6 3.1562 -0.4749 1.3618 5 6 4.6862 -0.4736 1.3620 6 1 5.0502 -1.0735 0.5278 7 8 5.1615 0.8672 1.2276 8 6 5.1965 -1.0662 2.6772 9 7 6.6615 -1.0655 2.6771 10 6 7.3356 -1.5443 3.7414 11 8 6.7278 -1.9765 4.7018 12 7 8.6833 -1.5442 3.7412 13 6 9.3845 -2.0428 4.8481 14 6 8.8132 -2.5744 6.0151 15 6 9.8200 -2.9398 6.8409 16 6 9.6674 -3.5558 8.2078 17 7 10.9859 -2.6602 6.2209 18 6 12.3266 -2.9021 6.7595 19 6 12.7868 -4.2806 6.3608 20 1 12.1447 -4.9134 5.7661 21 6 14.0278 -4.7341 6.7553 22 7 14.8099 -3.9634 7.4790 23 14 14.5980 -6.4431 6.2617 24 1 14.6331 -6.5446 4.7806 25 1 15.9576 -6.6878 6.8065 26 1 13.6568 -7.4551 6.8051 27 7 10.6896 -2.0983 4.9725 28 1 -1.0499 0.0001 0.0002 29 1 3.0089 1.0105 -0.1915 30 1 3.0097 -0.6699 -0.7786 31 1 2.7934 -1.4848 1.5533 32 1 2.7925 0.1955 2.1404 33 1 4.8755 1.4589 1.9370 34 1 4.8340 -2.0890 2.7796 35 1 4.8325 -0.4664 3.5113 36 1 7.1463 -0.7204 1.9111 37 1 9.1682 -1.1991 2.9752 38 1 7.7570 -2.6720 6.2186 39 1 9.6305 -2.7674 8.9595 40 1 10.5161 -4.2097 8.4084 41 1 8.7453 -4.1359 8.2440 42 1 13.0176 -2.1592 6.3614 43 1 12.3003 -2.8281 7.8467 44 1 15.6830 -4.2822 7.7563 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000799223675.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:23:28 Heat of formation + Delta-G solvation = 41.551713 kcal Electronic energy + Delta-G solvation = -25370.179985 eV Core-core repulsion = 21518.784349 eV Total energy + Delta-G solvation = -3851.395635 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.75586 -39.75971 -38.51679 -35.18221 -34.86193 -34.40102 -33.33017 -31.94933 -31.34481 -30.77026 -28.75890 -26.59117 -26.28900 -24.60720 -22.96495 -22.14166 -21.47559 -19.88838 -19.54084 -18.53929 -17.85760 -17.00919 -16.76332 -16.65452 -16.12372 -15.50557 -15.43267 -15.10366 -14.75951 -14.56136 -14.27042 -14.12503 -13.94472 -13.36283 -13.27135 -12.93959 -12.84663 -12.45223 -12.29237 -12.08817 -11.97522 -11.64722 -11.42701 -11.38503 -11.07858 -10.92459 -10.80958 -10.52831 -10.44340 -10.39412 -10.23099 -9.99540 -9.64870 -9.53236 -9.25149 -8.62595 -7.88713 -7.38007 -6.23751 -4.31511 2.29472 2.43403 2.45245 2.66881 3.11106 3.24353 3.28115 3.32305 3.55227 3.84061 3.86711 3.94471 4.23098 4.27422 4.35792 4.46259 4.58767 4.84416 4.93314 5.09589 5.12218 5.31672 5.35344 5.47716 5.58394 5.60924 5.66336 5.74411 5.97053 6.12692 6.21407 6.25478 6.51644 6.60964 6.66515 6.97599 7.06771 7.11093 7.16851 7.20730 7.55089 7.68880 7.90919 7.96991 8.09929 8.60470 8.69916 8.78042 9.34720 10.83288 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.029464 B = 0.001876 C = 0.001852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.072294 B =14922.578820 C =15111.387448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.188 4.188 3 C -0.009 4.009 4 C -0.144 4.144 5 C 0.096 3.904 6 H 0.110 0.890 7 O -0.558 6.558 8 C 0.109 3.891 9 N -0.740 5.740 10 C 0.712 3.288 11 O -0.568 6.568 12 N -0.643 5.643 13 C 0.282 3.718 14 C -0.289 4.289 15 C 0.091 3.909 16 C -0.088 4.088 17 N -0.318 5.318 18 C 0.259 3.741 19 C -0.537 4.537 20 H 0.064 0.936 21 C 0.066 3.934 22 N -0.892 5.892 23 Si 0.906 3.094 24 H -0.275 1.275 25 H -0.284 1.284 26 H -0.274 1.274 27 N -0.324 5.324 28 H 0.216 0.784 29 H 0.094 0.906 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.379 0.621 34 H 0.077 0.923 35 H 0.071 0.929 36 H 0.401 0.599 37 H 0.407 0.593 38 H 0.160 0.840 39 H 0.070 0.930 40 H 0.082 0.918 41 H 0.075 0.925 42 H 0.052 0.948 43 H 0.054 0.946 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.153 8.444 -11.494 27.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.188 4.188 3 C -0.046 4.046 4 C -0.182 4.182 5 C 0.036 3.964 6 H 0.127 0.873 7 O -0.363 6.363 8 C -0.016 4.016 9 N -0.397 5.397 10 C 0.411 3.589 11 O -0.444 6.444 12 N -0.293 5.293 13 C 0.028 3.972 14 C -0.320 4.320 15 C -0.041 4.041 16 C -0.147 4.147 17 N -0.101 5.101 18 C 0.141 3.859 19 C -0.575 4.575 20 H 0.082 0.918 21 C -0.137 4.137 22 N -0.530 5.530 23 Si 0.733 3.267 24 H -0.200 1.200 25 H -0.210 1.210 26 H -0.199 1.199 27 N -0.154 5.154 28 H 0.233 0.767 29 H 0.112 0.888 30 H 0.106 0.894 31 H 0.100 0.900 32 H 0.094 0.906 33 H 0.227 0.773 34 H 0.096 0.904 35 H 0.089 0.911 36 H 0.236 0.764 37 H 0.241 0.759 38 H 0.177 0.823 39 H 0.089 0.911 40 H 0.101 0.899 41 H 0.093 0.907 42 H 0.070 0.930 43 H 0.072 0.928 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -22.019 8.044 -11.555 26.135 hybrid contribution -0.308 -0.556 -0.232 0.677 sum -22.327 7.487 -11.787 26.334 Atomic orbital electron populations 1.24951 0.96048 1.01265 1.00587 1.23181 0.94635 1.00356 1.00645 1.18658 0.84456 1.03561 0.97888 1.22173 0.95070 1.03503 0.97485 1.22217 0.92601 0.84114 0.97438 0.87254 1.86590 1.77012 1.20011 1.52723 1.21888 0.79286 1.02498 0.97966 1.44848 1.06696 1.68470 1.19730 1.15624 0.80859 0.79118 0.83259 1.90875 1.67445 1.51892 1.34173 1.41375 1.04405 1.64847 1.18669 1.18665 0.90275 0.99791 0.88447 1.21231 1.00426 1.15823 0.94547 1.21056 0.86293 0.99928 0.96780 1.20372 1.03520 1.00373 0.90394 1.48961 1.07423 1.43917 1.09769 1.19666 0.73741 0.98082 0.94373 1.21303 1.02074 0.99315 1.34845 0.91798 1.24924 0.95926 0.98278 0.94621 1.69911 1.10238 1.36814 1.35999 0.86415 0.77762 0.83416 0.79087 1.20021 1.20967 1.19937 1.77250 1.11338 1.24523 1.02326 0.76707 0.88776 0.89430 0.89995 0.90626 0.77289 0.90434 0.91062 0.76421 0.75882 0.82282 0.91128 0.89943 0.90659 0.93036 0.92816 0.92223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.39 19.25 29.55 0.57 -0.82 16 2 C -0.19 -1.35 13.34 -37.12 -0.50 -1.84 16 3 C -0.01 -0.05 5.60 -29.52 -0.17 -0.21 16 4 C -0.14 -0.64 4.85 -26.73 -0.13 -0.77 16 5 C 0.10 0.46 3.05 -26.73 -0.08 0.38 16 6 H 0.11 0.50 8.14 -51.92 -0.42 0.07 16 7 O -0.56 -3.01 12.62 -35.23 -0.44 -3.46 16 8 C 0.11 0.81 5.34 -4.04 -0.02 0.79 16 9 N -0.74 -7.09 5.45 -65.22 -0.36 -7.45 16 10 C 0.71 10.46 8.53 -86.93 -0.74 9.72 16 11 O -0.57 -10.32 13.47 5.28 0.07 -10.24 16 12 N -0.64 -10.14 5.45 -15.51 -0.08 -10.22 16 13 C 0.28 5.83 8.11 -154.36 -1.25 4.58 16 14 C -0.29 -6.08 9.52 -39.84 -0.38 -6.46 16 15 C 0.09 1.94 6.93 -82.28 -0.57 1.38 16 16 C -0.09 -1.53 9.89 36.01 0.36 -1.18 16 17 N -0.32 -7.64 3.59 -58.33 -0.21 -7.85 16 18 C 0.26 6.70 5.81 -5.20 -0.03 6.67 16 19 C -0.54 -14.87 9.39 -34.44 -0.32 -15.19 16 20 H 0.06 1.82 7.81 -52.49 -0.41 1.41 16 21 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 22 N -0.89 -25.10 13.29 55.43 0.74 -24.37 16 23 Si 0.91 21.18 29.54 -169.99 -5.02 16.16 16 24 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 25 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 26 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 27 N -0.32 -7.57 12.59 31.44 0.40 -7.18 16 28 H 0.22 0.75 7.80 -54.10 -0.42 0.33 16 29 H 0.09 0.46 7.82 -51.93 -0.41 0.05 16 30 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.38 1.15 9.05 45.56 0.41 1.56 16 34 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.40 2.99 8.36 -40.82 -0.34 2.65 16 37 H 0.41 5.15 8.84 -40.82 -0.36 4.79 16 38 H 0.16 3.28 5.91 -52.49 -0.31 2.97 16 39 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.08 1.53 7.71 -51.93 -0.40 1.13 16 41 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 42 H 0.05 1.42 8.14 -51.93 -0.42 0.99 16 43 H 0.05 1.37 7.65 -51.93 -0.40 0.97 16 44 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 384.93 15.07 5.80 5.80 Total: -1.00 -34.79 384.93 -8.05 -42.84 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: -5.58 Total: 7.23 kcal Atomic # 6 Polarization: 2.11 SS G_CDS: -3.36 Total: -1.25 kcal Atomic # 7 Polarization: -57.55 SS G_CDS: 0.48 Total: -57.07 kcal Atomic # 8 Polarization: -13.33 SS G_CDS: -0.37 Total: -13.70 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.79 -8.05 -42.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000799223675.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.388 kcal (2) G-P(sol) polarization free energy of solvation -34.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.837 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds