Wall clock time and date at job start Tue Mar 31 2020 13:23:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17407 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.53001 * 109.46862 * 289.25940 * 3 2 1 5 5 C 1.52998 * 109.46986 * 180.02562 * 4 3 2 6 6 H 1.09007 * 109.47036 * 304.99922 * 5 4 3 7 7 O 1.42893 * 109.47512 * 65.00206 * 5 4 3 8 8 C 1.53005 * 109.47105 * 185.00296 * 5 4 3 9 9 N 1.46501 * 109.47036 * 179.97438 * 8 5 4 10 10 C 1.34773 * 120.00026 * 179.97438 * 9 8 5 11 11 O 1.21595 * 119.99822 * 359.97438 * 10 9 8 12 12 N 1.34772 * 120.00158 * 179.97438 * 10 9 8 13 13 C 1.40196 * 120.00000 * 180.02562 * 12 10 9 14 14 C 1.40396 * 125.97439 * 0.27024 * 13 12 10 15 15 C 1.35244 * 107.86945 * 180.17767 * 14 13 12 16 16 C 1.50703 * 126.07226 * 179.88542 * 15 14 13 17 17 N 1.34968 * 107.85703 * 359.61998 * 15 14 13 18 18 C 1.46496 * 125.97396 * 180.24284 * 17 15 14 19 19 C 1.50702 * 109.47079 * 90.00325 * 18 17 15 20 20 H 1.08002 * 120.00024 * 359.97438 * 19 18 17 21 21 C 1.37881 * 120.00327 * 179.97438 * 19 18 17 22 22 N 1.31513 * 119.99450 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00465 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46776 * 59.99591 * 23 21 19 25 25 H 1.48491 * 109.47249 * 179.97438 * 23 21 19 26 26 H 1.48505 * 109.46668 * 299.99903 * 23 21 19 27 27 N 1.31217 * 125.97157 * 180.02562 * 13 12 10 28 28 H 4.44645 * 5.63323 * 179.97438 * 4 1 2 29 29 H 1.09001 * 109.46928 * 169.26276 * 3 2 1 30 30 H 1.08993 * 109.47111 * 49.25663 * 3 2 1 31 31 H 1.09001 * 109.47075 * 60.00426 * 4 3 2 32 32 H 1.08996 * 109.47267 * 300.00250 * 4 3 2 33 33 H 0.96701 * 114.00160 * 59.99491 * 7 5 4 34 34 H 1.08998 * 109.46817 * 59.99982 * 8 5 4 35 35 H 1.08998 * 109.46882 * 299.99922 * 8 5 4 36 36 H 0.97004 * 120.00070 * 359.97438 * 9 8 5 37 37 H 0.97004 * 119.99938 * 0.02562 * 12 10 9 38 38 H 1.08001 * 126.06931 * 0.03580 * 14 13 12 39 39 H 1.09002 * 109.47152 * 269.68666 * 16 15 14 40 40 H 1.09001 * 109.46980 * 149.68766 * 16 15 14 41 41 H 1.09004 * 109.47113 * 29.68747 * 16 15 14 42 42 H 1.08997 * 109.47352 * 209.99655 * 18 17 15 43 43 H 1.09001 * 109.47699 * 330.00018 * 18 17 15 44 44 H 0.97001 * 120.00075 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 6 3.1562 -0.4749 1.3618 5 6 4.6862 -0.4736 1.3620 6 1 5.0502 -1.0735 0.5278 7 8 5.1615 0.8672 1.2276 8 6 5.1965 -1.0662 2.6772 9 7 6.6615 -1.0655 2.6771 10 6 7.3356 -1.5443 3.7414 11 8 6.7278 -1.9765 4.7018 12 7 8.6833 -1.5442 3.7412 13 6 9.3845 -2.0428 4.8481 14 6 8.8132 -2.5744 6.0151 15 6 9.8200 -2.9398 6.8409 16 6 9.6674 -3.5558 8.2078 17 7 10.9859 -2.6602 6.2209 18 6 12.3266 -2.9021 6.7595 19 6 12.7868 -4.2806 6.3608 20 1 12.1447 -4.9134 5.7661 21 6 14.0278 -4.7341 6.7553 22 7 14.8099 -3.9634 7.4790 23 14 14.5980 -6.4431 6.2617 24 1 14.6331 -6.5446 4.7806 25 1 15.9576 -6.6878 6.8065 26 1 13.6568 -7.4551 6.8051 27 7 10.6896 -2.0983 4.9725 28 1 -1.0499 0.0001 0.0002 29 1 3.0089 1.0105 -0.1915 30 1 3.0097 -0.6699 -0.7786 31 1 2.7934 -1.4848 1.5533 32 1 2.7925 0.1955 2.1404 33 1 4.8755 1.4589 1.9370 34 1 4.8340 -2.0890 2.7796 35 1 4.8325 -0.4664 3.5113 36 1 7.1463 -0.7204 1.9111 37 1 9.1682 -1.1991 2.9752 38 1 7.7570 -2.6720 6.2186 39 1 9.6305 -2.7674 8.9595 40 1 10.5161 -4.2097 8.4084 41 1 8.7453 -4.1359 8.2440 42 1 13.0176 -2.1592 6.3614 43 1 12.3003 -2.8281 7.8467 44 1 15.6830 -4.2822 7.7563 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000799223675.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:23:27 Heat of formation + Delta-G solvation = 16.381314 kcal Electronic energy + Delta-G solvation = -25371.271455 eV Core-core repulsion = 21518.784349 eV Total energy + Delta-G solvation = -3852.487106 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.29283 -40.97962 -39.11780 -36.36569 -35.66992 -35.33942 -35.16375 -33.02417 -32.61674 -32.27310 -29.51510 -28.38916 -27.84193 -25.48018 -24.66432 -22.73932 -22.60637 -21.30445 -21.04107 -19.22409 -18.85061 -18.73512 -17.88648 -17.43710 -17.29225 -16.90116 -16.58167 -16.25411 -15.90372 -15.68683 -15.65832 -15.05524 -14.92324 -14.62058 -14.32383 -13.85766 -13.78348 -13.70664 -13.69667 -13.55728 -13.36830 -13.12479 -12.82073 -12.66656 -12.36606 -12.23425 -12.10310 -11.85971 -11.56495 -11.37240 -11.34289 -11.16359 -10.96819 -10.82054 -10.72217 -10.20369 -9.54465 -9.05976 -8.31160 -6.49210 1.03288 1.13291 1.39016 1.40566 1.49628 1.67994 1.88630 1.94467 2.10853 2.36379 2.40731 2.98048 3.09795 3.46932 3.56039 3.75155 3.88223 4.04642 4.17642 4.19070 4.37989 4.48527 4.51641 4.69934 4.75474 4.78336 4.82454 4.88680 4.89643 4.99557 5.03573 5.14903 5.21071 5.23704 5.23746 5.27101 5.46964 5.54836 5.82506 5.88229 5.99162 6.28841 6.62755 6.73536 6.75527 6.83474 7.14933 7.21697 7.44305 8.74207 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.029464 B = 0.001876 C = 0.001852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.072294 B =14922.578820 C =15111.387448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.215 4.215 3 C -0.009 4.009 4 C -0.136 4.136 5 C 0.112 3.888 6 H 0.118 0.882 7 O -0.567 6.567 8 C 0.105 3.895 9 N -0.717 5.717 10 C 0.710 3.290 11 O -0.603 6.603 12 N -0.636 5.636 13 C 0.292 3.708 14 C -0.298 4.298 15 C 0.087 3.913 16 C -0.085 4.085 17 N -0.343 5.343 18 C 0.276 3.724 19 C -0.555 4.555 20 H 0.049 0.951 21 C 0.024 3.976 22 N -0.917 5.917 23 Si 0.970 3.030 24 H -0.276 1.276 25 H -0.272 1.272 26 H -0.266 1.266 27 N -0.361 5.361 28 H 0.238 0.762 29 H 0.096 0.904 30 H 0.095 0.905 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.390 0.610 34 H 0.074 0.926 35 H 0.070 0.930 36 H 0.415 0.585 37 H 0.421 0.579 38 H 0.166 0.834 39 H 0.093 0.907 40 H 0.067 0.933 41 H 0.101 0.899 42 H 0.024 0.976 43 H 0.052 0.948 44 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.498 8.062 -12.350 28.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.215 4.215 3 C -0.045 4.045 4 C -0.175 4.175 5 C 0.053 3.947 6 H 0.136 0.864 7 O -0.374 6.374 8 C -0.019 4.019 9 N -0.374 5.374 10 C 0.409 3.591 11 O -0.481 6.481 12 N -0.288 5.288 13 C 0.037 3.963 14 C -0.329 4.329 15 C -0.043 4.043 16 C -0.143 4.143 17 N -0.126 5.126 18 C 0.157 3.843 19 C -0.593 4.593 20 H 0.068 0.932 21 C -0.177 4.177 22 N -0.555 5.555 23 Si 0.794 3.206 24 H -0.201 1.201 25 H -0.197 1.197 26 H -0.190 1.190 27 N -0.192 5.192 28 H 0.254 0.746 29 H 0.114 0.886 30 H 0.113 0.887 31 H 0.100 0.900 32 H 0.096 0.904 33 H 0.239 0.761 34 H 0.092 0.908 35 H 0.088 0.912 36 H 0.252 0.748 37 H 0.258 0.742 38 H 0.183 0.817 39 H 0.111 0.889 40 H 0.086 0.914 41 H 0.120 0.880 42 H 0.042 0.958 43 H 0.070 0.930 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -23.400 7.704 -12.461 27.608 hybrid contribution -0.042 -0.344 -0.022 0.347 sum -23.442 7.360 -12.483 27.560 Atomic orbital electron populations 1.25697 0.97070 1.00822 1.00124 1.23789 0.95674 1.00867 1.01169 1.18711 0.83550 1.03905 0.98333 1.22085 0.94504 1.03563 0.97302 1.22070 0.92676 0.83942 0.96032 0.86415 1.86577 1.77205 1.20216 1.53410 1.22102 0.77594 1.02602 0.99583 1.44753 1.07524 1.66584 1.18490 1.15823 0.80298 0.79050 0.83934 1.90843 1.67899 1.53494 1.35847 1.41390 1.04892 1.64624 1.17901 1.18962 0.89722 0.98148 0.89507 1.21398 1.00527 1.16206 0.94762 1.21740 0.85442 0.99007 0.98122 1.20496 1.04127 1.00907 0.88796 1.48757 1.07297 1.45875 1.10670 1.19230 0.74545 0.96544 0.93993 1.21426 1.02567 1.00046 1.35261 0.93245 1.25721 0.95713 1.02040 0.94261 1.69995 1.10624 1.38485 1.36433 0.85421 0.77820 0.78821 0.78517 1.20134 1.19715 1.19035 1.77169 1.12864 1.26366 1.02768 0.74578 0.88557 0.88695 0.89993 0.90416 0.76057 0.90815 0.91215 0.74807 0.74186 0.81655 0.88895 0.91437 0.87997 0.95771 0.93020 0.91741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.65 19.25 74.32 1.43 -1.21 16 2 C -0.21 -2.84 13.34 31.12 0.42 -2.42 16 3 C -0.01 -0.07 5.60 28.79 0.16 0.09 16 4 C -0.14 -0.96 4.85 30.59 0.15 -0.81 16 5 C 0.11 0.84 3.05 30.60 0.09 0.93 16 6 H 0.12 0.75 8.14 -2.38 -0.02 0.73 16 7 O -0.57 -4.80 12.62 -148.98 -1.88 -6.68 16 8 C 0.11 1.38 5.34 86.38 0.46 1.84 16 9 N -0.72 -12.36 5.45 -478.53 -2.61 -14.97 16 10 C 0.71 19.96 8.53 179.06 1.53 21.49 16 11 O -0.60 -21.33 13.47 -4.02 -0.05 -21.39 16 12 N -0.64 -19.52 5.45 -321.23 -1.75 -21.28 16 13 C 0.29 12.08 8.11 133.31 1.08 13.16 16 14 C -0.30 -12.45 9.52 22.10 0.21 -12.24 16 15 C 0.09 3.74 6.93 41.39 0.29 4.03 16 16 C -0.09 -2.89 9.89 71.24 0.70 -2.18 16 17 N -0.34 -16.87 3.59 -338.45 -1.22 -18.08 16 18 C 0.28 14.74 5.81 85.63 0.50 15.24 16 19 C -0.55 -31.35 9.39 25.60 0.24 -31.11 16 20 H 0.05 2.88 7.81 -2.91 -0.02 2.86 16 21 C 0.02 1.30 5.46 84.66 0.46 1.77 16 22 N -0.92 -51.97 13.29 21.45 0.28 -51.69 16 23 Si 0.97 43.21 29.54 68.60 2.03 45.23 16 24 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 25 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 26 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 27 N -0.36 -17.20 12.59 -54.43 -0.69 -17.89 16 28 H 0.24 1.29 7.80 -4.42 -0.03 1.25 16 29 H 0.10 0.79 7.82 -2.39 -0.02 0.77 16 30 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.39 1.51 9.05 -74.06 -0.67 0.84 16 34 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.41 5.17 8.36 -92.71 -0.78 4.39 16 37 H 0.42 10.20 8.84 -92.71 -0.82 9.38 16 38 H 0.17 6.72 5.91 -2.91 -0.02 6.70 16 39 H 0.09 2.72 8.14 -2.39 -0.02 2.70 16 40 H 0.07 2.50 7.71 -2.39 -0.02 2.48 16 41 H 0.10 2.87 8.14 -2.38 -0.02 2.85 16 42 H 0.02 1.40 8.14 -2.39 -0.02 1.38 16 43 H 0.05 2.73 7.65 -2.39 -0.02 2.71 16 44 H 0.27 14.49 8.31 -92.71 -0.77 13.72 16 Total: -1.00 -75.36 384.93 0.62 -74.74 By element: Atomic # 1 Polarization: 24.66 SS G_CDS: -1.22 Total: 23.44 kcal Atomic # 6 Polarization: 0.84 SS G_CDS: 7.72 Total: 8.56 kcal Atomic # 7 Polarization: -117.93 SS G_CDS: -5.98 Total: -123.91 kcal Atomic # 8 Polarization: -26.13 SS G_CDS: -1.93 Total: -28.07 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.23 kcal Total: -75.36 0.62 -74.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000799223675.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.123 kcal (2) G-P(sol) polarization free energy of solvation -75.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.742 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds