Wall clock time and date at job start Tue Mar 31 2020 13:23:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.52996 * 109.47404 * 298.10366 * 3 2 1 5 5 C 1.53001 * 109.46899 * 180.02562 * 4 3 2 6 6 H 1.08995 * 109.47361 * 55.00766 * 5 4 3 7 7 O 1.42897 * 109.47098 * 294.99848 * 5 4 3 8 8 C 1.52999 * 109.46847 * 175.00132 * 5 4 3 9 9 N 1.46500 * 109.47123 * 184.99956 * 8 5 4 10 10 C 1.34777 * 120.00048 * 179.97438 * 9 8 5 11 11 O 1.21590 * 119.99858 * 0.02562 * 10 9 8 12 12 N 1.34772 * 120.00191 * 179.97438 * 10 9 8 13 13 C 1.40194 * 120.00476 * 180.02562 * 12 10 9 14 14 C 1.40400 * 125.96966 * 0.28015 * 13 12 10 15 15 C 1.35244 * 107.86833 * 180.14766 * 14 13 12 16 16 C 1.50703 * 126.07226 * 179.90760 * 15 14 13 17 17 N 1.34968 * 107.85703 * 359.64215 * 15 14 13 18 18 C 1.46496 * 125.97468 * 180.21191 * 17 15 14 19 19 C 1.50702 * 109.47635 * 89.99791 * 18 17 15 20 20 H 1.07999 * 119.99790 * 359.97438 * 19 18 17 21 21 C 1.37878 * 119.99972 * 179.97438 * 19 18 17 22 22 N 1.31512 * 120.00160 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 119.99693 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47113 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.46540 * 119.99926 * 23 21 19 26 26 H 1.48495 * 109.46996 * 239.99739 * 23 21 19 27 27 N 1.31208 * 125.97577 * 180.02562 * 13 12 10 28 28 H 4.44645 * 5.63411 * 179.97438 * 4 1 2 29 29 H 1.09001 * 109.46631 * 178.10184 * 3 2 1 30 30 H 1.09003 * 109.47048 * 58.10993 * 3 2 1 31 31 H 1.09007 * 109.46702 * 60.00335 * 4 3 2 32 32 H 1.08994 * 109.47587 * 300.00502 * 4 3 2 33 33 H 0.96703 * 114.00603 * 300.00134 * 7 5 4 34 34 H 1.09004 * 109.47362 * 64.99962 * 8 5 4 35 35 H 1.08998 * 109.47668 * 305.00142 * 8 5 4 36 36 H 0.96996 * 120.00102 * 0.02562 * 9 8 5 37 37 H 0.97008 * 119.99952 * 0.02562 * 12 10 9 38 38 H 1.08001 * 126.06886 * 0.03418 * 14 13 12 39 39 H 1.09002 * 109.47152 * 269.68666 * 16 15 14 40 40 H 1.09001 * 109.46980 * 149.68766 * 16 15 14 41 41 H 1.09004 * 109.47113 * 29.68747 * 16 15 14 42 42 H 1.09001 * 109.47030 * 210.00125 * 18 17 15 43 43 H 1.09005 * 109.47259 * 329.99077 * 18 17 15 44 44 H 0.96997 * 120.00168 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 6 3.1564 -0.6786 1.2724 5 6 4.6864 -0.6773 1.2726 6 1 5.0489 0.3432 1.1495 7 8 5.1636 -1.4856 0.1951 8 6 5.1967 -1.2431 2.5993 9 7 6.6566 -1.1319 2.6484 10 6 7.3298 -1.5694 3.7310 11 8 6.7254 -2.0569 4.6667 12 7 8.6729 -1.4675 3.7760 13 6 9.3732 -1.9231 4.9018 14 6 8.8057 -2.5085 6.0448 15 6 9.8098 -2.8059 6.9007 16 6 9.6596 -3.4465 8.2565 17 7 10.9708 -2.4324 6.3225 18 6 12.3075 -2.5778 6.9039 19 6 12.8842 -3.9133 6.5102 20 1 12.3119 -4.5867 5.8893 21 6 14.1423 -4.2755 6.9426 22 7 14.8393 -3.4553 7.6982 23 14 14.8567 -5.9313 6.4551 24 1 13.8802 -6.6615 5.6075 25 1 16.1142 -5.7227 5.6932 26 1 15.1439 -6.7254 7.6765 27 7 10.6739 -1.8812 5.0695 28 1 -1.0498 0.0000 0.0004 29 1 3.0088 1.0280 -0.0340 30 1 3.0096 -0.5421 -0.8726 31 1 2.7936 -1.7059 1.3063 32 1 2.7929 -0.1359 2.1449 33 1 4.8790 -2.4087 0.2399 34 1 4.9092 -2.2913 2.6819 35 1 4.7615 -0.6809 3.4255 36 1 7.1387 -0.7426 1.9022 37 1 9.1551 -1.0789 3.0293 38 1 7.7539 -2.6878 6.2118 39 1 9.5384 -2.6714 9.0132 40 1 10.5484 -4.0367 8.4799 41 1 8.7833 -4.0949 8.2569 42 1 12.9528 -1.7805 6.5351 43 1 12.2399 -2.5172 7.9901 44 1 15.7243 -3.7103 8.0027 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000799223676.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:23:30 Heat of formation + Delta-G solvation = 41.537457 kcal Electronic energy + Delta-G solvation = -25367.457996 eV Core-core repulsion = 21516.061743 eV Total energy + Delta-G solvation = -3851.396254 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.75702 -39.75795 -38.51502 -35.17764 -34.86809 -34.41855 -33.33307 -31.94213 -31.34590 -30.77157 -28.75333 -26.59290 -26.29047 -24.61031 -22.96889 -22.15287 -21.48122 -19.88853 -19.54282 -18.53932 -17.86010 -16.99654 -16.76551 -16.66380 -16.12058 -15.51690 -15.42507 -15.10174 -14.76631 -14.56130 -14.26338 -14.09894 -13.96288 -13.38692 -13.27350 -12.93053 -12.83523 -12.46652 -12.29244 -12.09507 -11.97625 -11.64967 -11.43022 -11.38922 -11.05917 -10.92225 -10.84704 -10.52876 -10.40638 -10.39764 -10.24146 -9.99695 -9.64942 -9.50910 -9.25241 -8.63711 -7.88826 -7.38062 -6.24232 -4.31796 2.29464 2.43355 2.45228 2.66652 3.11222 3.21046 3.28980 3.34942 3.55570 3.84164 3.85778 3.94758 4.22889 4.27155 4.35612 4.46345 4.58592 4.84471 4.92847 5.09299 5.12203 5.30833 5.35482 5.47458 5.58281 5.60889 5.66225 5.74300 5.96925 6.12582 6.21109 6.25378 6.51496 6.60651 6.66388 6.97471 7.06704 7.11794 7.16538 7.20683 7.54982 7.69042 7.90625 7.96624 8.09758 8.60214 8.70027 8.78315 9.34638 10.82896 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.029928 B = 0.001890 C = 0.001842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.364742 B =14808.684880 C =15193.209779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.188 4.188 3 C -0.009 4.009 4 C -0.144 4.144 5 C 0.096 3.904 6 H 0.110 0.890 7 O -0.558 6.558 8 C 0.109 3.891 9 N -0.740 5.740 10 C 0.712 3.288 11 O -0.568 6.568 12 N -0.643 5.643 13 C 0.282 3.718 14 C -0.289 4.289 15 C 0.091 3.909 16 C -0.088 4.088 17 N -0.318 5.318 18 C 0.258 3.742 19 C -0.535 4.535 20 H 0.065 0.935 21 C 0.065 3.935 22 N -0.892 5.892 23 Si 0.906 3.094 24 H -0.271 1.271 25 H -0.281 1.281 26 H -0.281 1.281 27 N -0.324 5.324 28 H 0.216 0.784 29 H 0.087 0.913 30 H 0.094 0.906 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.379 0.621 34 H 0.071 0.929 35 H 0.077 0.923 36 H 0.401 0.599 37 H 0.407 0.593 38 H 0.160 0.840 39 H 0.070 0.930 40 H 0.082 0.918 41 H 0.075 0.925 42 H 0.052 0.948 43 H 0.054 0.946 44 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.358 6.540 -12.314 27.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.188 4.188 3 C -0.046 4.046 4 C -0.182 4.182 5 C 0.036 3.964 6 H 0.127 0.873 7 O -0.363 6.363 8 C -0.016 4.016 9 N -0.398 5.398 10 C 0.411 3.589 11 O -0.444 6.444 12 N -0.293 5.293 13 C 0.028 3.972 14 C -0.320 4.320 15 C -0.041 4.041 16 C -0.147 4.147 17 N -0.101 5.101 18 C 0.141 3.859 19 C -0.574 4.574 20 H 0.083 0.917 21 C -0.138 4.138 22 N -0.530 5.530 23 Si 0.733 3.267 24 H -0.196 1.196 25 H -0.207 1.207 26 H -0.206 1.206 27 N -0.154 5.154 28 H 0.233 0.767 29 H 0.106 0.894 30 H 0.112 0.888 31 H 0.094 0.906 32 H 0.100 0.900 33 H 0.227 0.773 34 H 0.090 0.910 35 H 0.096 0.904 36 H 0.235 0.765 37 H 0.241 0.759 38 H 0.177 0.823 39 H 0.089 0.911 40 H 0.101 0.899 41 H 0.093 0.907 42 H 0.070 0.930 43 H 0.072 0.928 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -22.239 7.004 -11.997 26.222 hybrid contribution -0.206 -1.153 -0.495 1.272 sum -22.445 5.851 -12.493 26.346 Atomic orbital electron populations 1.24948 0.96047 1.01093 1.00757 1.23180 0.94635 1.00440 1.00562 1.18660 0.84457 1.02264 0.99185 1.22175 0.95063 1.02537 0.98459 1.22208 0.92572 0.96063 0.85526 0.87269 1.86594 1.77031 1.25031 1.47693 1.21901 0.79422 1.02252 0.98028 1.44865 1.07225 1.67922 1.19749 1.15624 0.80836 0.79325 0.83069 1.90874 1.67448 1.49655 1.36388 1.41376 1.04886 1.64202 1.18835 1.18662 0.90316 0.99937 0.88258 1.21233 1.00604 1.15601 0.94594 1.21056 0.86376 0.99582 0.97039 1.20372 1.03602 1.00066 0.90617 1.48960 1.07647 1.43261 1.10204 1.19679 0.73808 0.98819 0.93634 1.21382 1.01596 1.01366 1.33032 0.91680 1.24929 0.96318 0.97920 0.94633 1.69928 1.12303 1.36147 1.34595 0.86309 0.79027 0.82959 0.78446 1.19584 1.20680 1.20648 1.77245 1.11346 1.25165 1.01681 0.76709 0.89439 0.88771 0.90603 0.90009 0.77260 0.91027 0.90445 0.76493 0.75885 0.82281 0.91128 0.89943 0.90656 0.93028 0.92808 0.92334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.39 19.25 29.55 0.57 -0.82 16 2 C -0.19 -1.34 13.34 -37.12 -0.50 -1.84 16 3 C -0.01 -0.05 5.60 -29.52 -0.17 -0.21 16 4 C -0.14 -0.64 4.85 -26.73 -0.13 -0.77 16 5 C 0.10 0.47 3.00 -26.73 -0.08 0.39 16 6 H 0.11 0.48 8.14 -51.93 -0.42 0.06 16 7 O -0.56 -3.13 12.82 -35.23 -0.45 -3.58 16 8 C 0.11 0.81 5.31 -4.04 -0.02 0.79 16 9 N -0.74 -7.10 5.51 -65.22 -0.36 -7.46 16 10 C 0.71 10.47 8.53 -86.92 -0.74 9.73 16 11 O -0.57 -10.31 13.47 5.29 0.07 -10.24 16 12 N -0.64 -10.14 5.45 -15.51 -0.08 -10.22 16 13 C 0.28 5.84 8.11 -154.37 -1.25 4.58 16 14 C -0.29 -6.08 9.52 -39.83 -0.38 -6.46 16 15 C 0.09 1.95 6.93 -82.28 -0.57 1.38 16 16 C -0.09 -1.53 9.89 36.01 0.36 -1.17 16 17 N -0.32 -7.64 3.59 -58.32 -0.21 -7.85 16 18 C 0.26 6.68 5.81 -5.20 -0.03 6.65 16 19 C -0.54 -14.83 9.39 -34.44 -0.32 -15.15 16 20 H 0.06 1.87 7.81 -52.49 -0.41 1.46 16 21 C 0.07 1.78 5.46 -17.82 -0.10 1.69 16 22 N -0.89 -25.11 13.29 55.43 0.74 -24.37 16 23 Si 0.91 21.18 29.54 -169.99 -5.02 16.16 16 24 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 25 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 26 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 27 N -0.32 -7.57 12.59 31.44 0.40 -7.17 16 28 H 0.22 0.75 7.80 -54.10 -0.42 0.32 16 29 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.09 0.46 7.82 -51.93 -0.41 0.06 16 31 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 32 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.38 1.23 9.05 45.56 0.41 1.64 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.40 2.96 8.49 -40.82 -0.35 2.61 16 37 H 0.41 5.14 8.84 -40.82 -0.36 4.78 16 38 H 0.16 3.28 5.91 -52.49 -0.31 2.97 16 39 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.08 1.53 7.71 -51.93 -0.40 1.13 16 41 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 42 H 0.05 1.42 8.14 -51.93 -0.42 1.00 16 43 H 0.05 1.37 7.65 -51.93 -0.40 0.97 16 44 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 385.23 15.07 5.81 5.81 Total: -1.00 -34.94 385.23 -8.06 -43.00 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: -5.58 Total: 7.17 kcal Atomic # 6 Polarization: 2.13 SS G_CDS: -3.36 Total: -1.23 kcal Atomic # 7 Polarization: -57.56 SS G_CDS: 0.48 Total: -57.08 kcal Atomic # 8 Polarization: -13.44 SS G_CDS: -0.38 Total: -13.82 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -34.94 -8.06 -43.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000799223676.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.533 kcal (2) G-P(sol) polarization free energy of solvation -34.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.995 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds