Wall clock time and date at job start Tue Mar 31 2020 13:23:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.52996 * 109.47404 * 298.10366 * 3 2 1 5 5 C 1.53001 * 109.46899 * 180.02562 * 4 3 2 6 6 H 1.08995 * 109.47361 * 55.00766 * 5 4 3 7 7 O 1.42897 * 109.47098 * 294.99848 * 5 4 3 8 8 C 1.52999 * 109.46847 * 175.00132 * 5 4 3 9 9 N 1.46500 * 109.47123 * 184.99956 * 8 5 4 10 10 C 1.34777 * 120.00048 * 179.97438 * 9 8 5 11 11 O 1.21590 * 119.99858 * 0.02562 * 10 9 8 12 12 N 1.34772 * 120.00191 * 179.97438 * 10 9 8 13 13 C 1.40194 * 120.00476 * 180.02562 * 12 10 9 14 14 C 1.40400 * 125.96966 * 0.28015 * 13 12 10 15 15 C 1.35244 * 107.86833 * 180.14766 * 14 13 12 16 16 C 1.50703 * 126.07226 * 179.90760 * 15 14 13 17 17 N 1.34968 * 107.85703 * 359.64215 * 15 14 13 18 18 C 1.46496 * 125.97468 * 180.21191 * 17 15 14 19 19 C 1.50702 * 109.47635 * 89.99791 * 18 17 15 20 20 H 1.07999 * 119.99790 * 359.97438 * 19 18 17 21 21 C 1.37878 * 119.99972 * 179.97438 * 19 18 17 22 22 N 1.31512 * 120.00160 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 119.99693 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47113 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.46540 * 119.99926 * 23 21 19 26 26 H 1.48495 * 109.46996 * 239.99739 * 23 21 19 27 27 N 1.31208 * 125.97577 * 180.02562 * 13 12 10 28 28 H 4.44645 * 5.63411 * 179.97438 * 4 1 2 29 29 H 1.09001 * 109.46631 * 178.10184 * 3 2 1 30 30 H 1.09003 * 109.47048 * 58.10993 * 3 2 1 31 31 H 1.09007 * 109.46702 * 60.00335 * 4 3 2 32 32 H 1.08994 * 109.47587 * 300.00502 * 4 3 2 33 33 H 0.96703 * 114.00603 * 300.00134 * 7 5 4 34 34 H 1.09004 * 109.47362 * 64.99962 * 8 5 4 35 35 H 1.08998 * 109.47668 * 305.00142 * 8 5 4 36 36 H 0.96996 * 120.00102 * 0.02562 * 9 8 5 37 37 H 0.97008 * 119.99952 * 0.02562 * 12 10 9 38 38 H 1.08001 * 126.06886 * 0.03418 * 14 13 12 39 39 H 1.09002 * 109.47152 * 269.68666 * 16 15 14 40 40 H 1.09001 * 109.46980 * 149.68766 * 16 15 14 41 41 H 1.09004 * 109.47113 * 29.68747 * 16 15 14 42 42 H 1.09001 * 109.47030 * 210.00125 * 18 17 15 43 43 H 1.09005 * 109.47259 * 329.99077 * 18 17 15 44 44 H 0.96997 * 120.00168 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 6 3.1564 -0.6786 1.2724 5 6 4.6864 -0.6773 1.2726 6 1 5.0489 0.3432 1.1495 7 8 5.1636 -1.4856 0.1951 8 6 5.1967 -1.2431 2.5993 9 7 6.6566 -1.1319 2.6484 10 6 7.3298 -1.5694 3.7310 11 8 6.7254 -2.0569 4.6667 12 7 8.6729 -1.4675 3.7760 13 6 9.3732 -1.9231 4.9018 14 6 8.8057 -2.5085 6.0448 15 6 9.8098 -2.8059 6.9007 16 6 9.6596 -3.4465 8.2565 17 7 10.9708 -2.4324 6.3225 18 6 12.3075 -2.5778 6.9039 19 6 12.8842 -3.9133 6.5102 20 1 12.3119 -4.5867 5.8893 21 6 14.1423 -4.2755 6.9426 22 7 14.8393 -3.4553 7.6982 23 14 14.8567 -5.9313 6.4551 24 1 13.8802 -6.6615 5.6075 25 1 16.1142 -5.7227 5.6932 26 1 15.1439 -6.7254 7.6765 27 7 10.6739 -1.8812 5.0695 28 1 -1.0498 0.0000 0.0004 29 1 3.0088 1.0280 -0.0340 30 1 3.0096 -0.5421 -0.8726 31 1 2.7936 -1.7059 1.3063 32 1 2.7929 -0.1359 2.1449 33 1 4.8790 -2.4087 0.2399 34 1 4.9092 -2.2913 2.6819 35 1 4.7615 -0.6809 3.4255 36 1 7.1387 -0.7426 1.9022 37 1 9.1551 -1.0789 3.0293 38 1 7.7539 -2.6878 6.2118 39 1 9.5384 -2.6714 9.0132 40 1 10.5484 -4.0367 8.4799 41 1 8.7833 -4.0949 8.2569 42 1 12.9528 -1.7805 6.5351 43 1 12.2399 -2.5172 7.9901 44 1 15.7243 -3.7103 8.0027 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000799223676.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:23:30 Heat of formation + Delta-G solvation = 16.160189 kcal Electronic energy + Delta-G solvation = -25368.558437 eV Core-core repulsion = 21516.061743 eV Total energy + Delta-G solvation = -3852.496695 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.29387 -40.98015 -39.11688 -36.36915 -35.66734 -35.34971 -35.17931 -33.02588 -32.61740 -32.26751 -29.51252 -28.39059 -27.84247 -25.48200 -24.66900 -22.74349 -22.62284 -21.30483 -21.04189 -19.22383 -18.85372 -18.74177 -17.88493 -17.42659 -17.31560 -16.89354 -16.56927 -16.28340 -15.84130 -15.74701 -15.65360 -15.03057 -14.93295 -14.62025 -14.34637 -13.88209 -13.79366 -13.70233 -13.68252 -13.55229 -13.37033 -13.11570 -12.81730 -12.68486 -12.36902 -12.26253 -12.07171 -11.86727 -11.56697 -11.37249 -11.33125 -11.16550 -10.96772 -10.81939 -10.72846 -10.20649 -9.54542 -9.06132 -8.31678 -6.49558 1.03421 1.12966 1.37440 1.39228 1.52022 1.67971 1.88673 1.94513 2.10899 2.36032 2.40753 2.97553 3.10010 3.46071 3.55718 3.74876 3.88132 4.05255 4.17570 4.18652 4.37875 4.48477 4.51396 4.69618 4.75552 4.78395 4.82077 4.88595 4.89534 4.99442 5.03507 5.14800 5.20959 5.23630 5.23736 5.26863 5.47066 5.55055 5.82238 5.87903 5.99040 6.28801 6.62998 6.73559 6.75378 6.83140 7.14747 7.21572 7.44039 8.74107 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.029928 B = 0.001890 C = 0.001842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.364742 B =14808.684880 C =15193.209779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.215 4.215 3 C -0.009 4.009 4 C -0.136 4.136 5 C 0.112 3.888 6 H 0.119 0.881 7 O -0.568 6.568 8 C 0.106 3.894 9 N -0.717 5.717 10 C 0.710 3.290 11 O -0.603 6.603 12 N -0.636 5.636 13 C 0.292 3.708 14 C -0.298 4.298 15 C 0.087 3.913 16 C -0.085 4.085 17 N -0.344 5.344 18 C 0.275 3.725 19 C -0.553 4.553 20 H 0.049 0.951 21 C 0.023 3.977 22 N -0.918 5.918 23 Si 0.971 3.029 24 H -0.274 1.274 25 H -0.274 1.274 26 H -0.267 1.267 27 N -0.361 5.361 28 H 0.238 0.762 29 H 0.095 0.905 30 H 0.096 0.904 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.390 0.610 34 H 0.068 0.932 35 H 0.075 0.925 36 H 0.415 0.585 37 H 0.421 0.579 38 H 0.166 0.834 39 H 0.093 0.907 40 H 0.067 0.933 41 H 0.101 0.899 42 H 0.025 0.975 43 H 0.052 0.948 44 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.592 6.116 -13.185 28.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.215 4.215 3 C -0.045 4.045 4 C -0.175 4.175 5 C 0.053 3.947 6 H 0.137 0.863 7 O -0.375 6.375 8 C -0.019 4.019 9 N -0.374 5.374 10 C 0.409 3.591 11 O -0.481 6.481 12 N -0.288 5.288 13 C 0.037 3.963 14 C -0.329 4.329 15 C -0.043 4.043 16 C -0.143 4.143 17 N -0.126 5.126 18 C 0.156 3.844 19 C -0.591 4.591 20 H 0.067 0.933 21 C -0.178 4.178 22 N -0.556 5.556 23 Si 0.795 3.205 24 H -0.199 1.199 25 H -0.200 1.200 26 H -0.192 1.192 27 N -0.192 5.192 28 H 0.254 0.746 29 H 0.114 0.886 30 H 0.114 0.886 31 H 0.095 0.905 32 H 0.101 0.899 33 H 0.239 0.761 34 H 0.086 0.914 35 H 0.093 0.907 36 H 0.252 0.748 37 H 0.258 0.742 38 H 0.183 0.817 39 H 0.111 0.889 40 H 0.086 0.914 41 H 0.120 0.880 42 H 0.043 0.957 43 H 0.070 0.930 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -23.506 6.607 -12.925 27.627 hybrid contribution 0.022 -0.963 -0.294 1.007 sum -23.484 5.644 -13.219 27.533 Atomic orbital electron populations 1.25694 0.97069 1.00664 1.00279 1.23788 0.95672 1.00946 1.01092 1.18713 0.83552 1.02845 0.99393 1.22086 0.94482 1.02632 0.98254 1.22074 0.92662 0.96170 0.83840 0.86290 1.86580 1.77252 1.25994 1.47695 1.22116 0.77754 1.02355 0.99627 1.44775 1.08029 1.66154 1.18433 1.15825 0.80280 0.79207 0.83794 1.90841 1.67911 1.51277 1.38038 1.41391 1.05364 1.64066 1.17987 1.18961 0.89757 0.98281 0.89348 1.21401 1.00713 1.15999 0.94801 1.21743 0.85521 0.98651 0.98398 1.20498 1.04034 1.00743 0.89056 1.48758 1.07538 1.45244 1.11072 1.19243 0.74642 0.97148 0.93342 1.21478 1.02235 1.01976 1.33412 0.93292 1.25721 0.96358 1.01412 0.94275 1.70006 1.12774 1.37789 1.35019 0.85306 0.78061 0.78598 0.78486 1.19916 1.19983 1.19165 1.77164 1.12873 1.27002 1.02117 0.74580 0.88636 0.88611 0.90457 0.89932 0.76067 0.91351 0.90653 0.74843 0.74179 0.81655 0.88892 0.91412 0.87995 0.95739 0.92997 0.91744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.64 19.25 74.32 1.43 -1.21 16 2 C -0.21 -2.83 13.34 31.13 0.42 -2.42 16 3 C -0.01 -0.07 5.60 28.79 0.16 0.09 16 4 C -0.14 -0.96 4.85 30.59 0.15 -0.81 16 5 C 0.11 0.84 3.00 30.59 0.09 0.93 16 6 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 7 O -0.57 -5.07 12.82 -148.98 -1.91 -6.98 16 8 C 0.11 1.38 5.31 86.38 0.46 1.84 16 9 N -0.72 -12.38 5.51 -478.53 -2.64 -15.02 16 10 C 0.71 19.99 8.53 179.06 1.53 21.51 16 11 O -0.60 -21.35 13.47 -4.00 -0.05 -21.40 16 12 N -0.64 -19.53 5.45 -321.24 -1.75 -21.29 16 13 C 0.29 12.08 8.11 133.31 1.08 13.16 16 14 C -0.30 -12.47 9.52 22.11 0.21 -12.26 16 15 C 0.09 3.74 6.93 41.39 0.29 4.03 16 16 C -0.09 -2.89 9.89 71.24 0.70 -2.18 16 17 N -0.34 -16.88 3.59 -338.44 -1.22 -18.10 16 18 C 0.28 14.70 5.81 85.63 0.50 15.20 16 19 C -0.55 -31.27 9.39 25.60 0.24 -31.03 16 20 H 0.05 2.87 7.81 -2.91 -0.02 2.85 16 21 C 0.02 1.28 5.46 84.66 0.46 1.74 16 22 N -0.92 -51.95 13.29 21.45 0.28 -51.66 16 23 Si 0.97 43.29 29.54 68.60 2.03 45.32 16 24 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 25 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 26 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 27 N -0.36 -17.20 12.59 -54.44 -0.69 -17.89 16 28 H 0.24 1.28 7.80 -4.43 -0.03 1.25 16 29 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.10 0.79 7.82 -2.39 -0.02 0.78 16 31 H 0.08 0.54 8.14 -2.38 -0.02 0.52 16 32 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.39 1.71 9.05 -74.06 -0.67 1.04 16 34 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 35 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.41 5.11 8.49 -92.71 -0.79 4.32 16 37 H 0.42 10.19 8.84 -92.70 -0.82 9.37 16 38 H 0.17 6.73 5.91 -2.91 -0.02 6.71 16 39 H 0.09 2.72 8.14 -2.39 -0.02 2.70 16 40 H 0.07 2.50 7.71 -2.39 -0.02 2.48 16 41 H 0.10 2.87 8.14 -2.38 -0.02 2.85 16 42 H 0.02 1.41 8.14 -2.39 -0.02 1.39 16 43 H 0.05 2.74 7.65 -2.38 -0.02 2.72 16 44 H 0.27 14.39 8.31 -92.71 -0.77 13.62 16 Total: -1.00 -75.69 385.23 0.54 -75.14 By element: Atomic # 1 Polarization: 24.50 SS G_CDS: -1.23 Total: 23.27 kcal Atomic # 6 Polarization: 0.89 SS G_CDS: 7.72 Total: 8.61 kcal Atomic # 7 Polarization: -117.95 SS G_CDS: -6.00 Total: -123.95 kcal Atomic # 8 Polarization: -26.42 SS G_CDS: -1.96 Total: -28.38 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Total: -75.69 0.54 -75.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000799223676.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.302 kcal (2) G-P(sol) polarization free energy of solvation -75.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.142 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds