Wall clock time and date at job start Tue Mar 31 2020 12:10:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34654 * 117.00363 * 2 1 4 4 O 1.21518 * 119.99472 * 0.02562 * 3 2 1 5 5 N 1.34773 * 120.00526 * 179.97438 * 3 2 1 6 6 C 1.40115 * 120.00497 * 184.62544 * 5 3 2 7 7 C 1.38859 * 119.99508 * 324.90964 * 6 5 3 8 8 C 1.38052 * 120.00066 * 180.25148 * 7 6 5 9 9 C 1.38868 * 119.99598 * 359.51690 * 8 7 6 10 10 N 1.40085 * 120.00115 * 180.20334 * 9 8 7 11 11 C 1.34780 * 119.99927 * 35.37152 * 10 9 8 12 12 O 1.21289 * 119.99912 * 355.36282 * 11 10 9 13 13 C 1.50700 * 119.99978 * 175.36506 * 11 10 9 14 14 C 1.52998 * 109.46886 * 179.97438 * 13 11 10 15 15 C 1.53008 * 109.46959 * 179.97438 * 14 13 11 16 16 C 1.52998 * 109.46959 * 180.02562 * 15 14 13 17 17 C 1.50697 * 109.47249 * 180.02562 * 16 15 14 18 18 H 1.08007 * 119.99745 * 359.97438 * 17 16 15 19 19 C 1.37874 * 120.00470 * 180.02562 * 17 16 15 20 20 N 1.31509 * 120.00078 * 180.02562 * 19 17 16 21 21 Si 1.86804 * 119.99841 * 359.97438 * 19 17 16 22 22 H 1.48491 * 109.47077 * 90.00200 * 21 19 17 23 23 H 1.48500 * 109.47348 * 210.00470 * 21 19 17 24 24 H 1.48507 * 109.46987 * 330.00264 * 21 19 17 25 25 C 1.38873 * 119.99905 * 0.50776 * 9 8 7 26 26 C 1.38049 * 119.99499 * 359.72274 * 25 9 8 27 27 H 1.09001 * 109.46680 * 59.99356 * 1 2 3 28 28 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47148 * 299.99759 * 1 2 3 30 30 H 0.97004 * 119.99805 * 4.62975 * 5 3 2 31 31 H 1.08005 * 120.00423 * 359.97438 * 7 6 5 32 32 H 1.07997 * 120.00515 * 179.72409 * 8 7 6 33 33 H 0.97003 * 120.00391 * 215.36033 * 10 9 8 34 34 H 1.09000 * 109.46992 * 299.99773 * 13 11 10 35 35 H 1.08999 * 109.46910 * 59.99805 * 13 11 10 36 36 H 1.09000 * 109.47348 * 299.99835 * 14 13 11 37 37 H 1.08999 * 109.47276 * 60.00309 * 14 13 11 38 38 H 1.09000 * 109.47098 * 300.00162 * 15 14 13 39 39 H 1.08999 * 109.46731 * 60.00150 * 15 14 13 40 40 H 1.09000 * 109.47348 * 300.00009 * 16 15 14 41 41 H 1.09002 * 109.46895 * 60.00131 * 16 15 14 42 42 H 0.97006 * 119.99951 * 179.97438 * 20 19 17 43 43 H 1.07998 * 120.00200 * 179.69636 * 25 9 8 44 44 H 1.08003 * 120.00086 * 179.97438 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0634 1.1997 0.0000 4 8 1.4016 2.2189 0.0005 5 7 3.4093 1.2703 0.0005 6 6 4.0456 2.5148 0.0984 7 6 3.4816 3.6321 -0.5030 8 6 4.1111 4.8573 -0.4111 9 6 5.3033 4.9742 0.2913 10 7 5.9400 6.2183 0.3883 11 6 5.2066 7.3452 0.4820 12 8 3.9979 7.2908 0.3979 13 6 5.8885 8.6727 0.6913 14 6 4.8361 9.7810 0.7616 15 6 5.5283 11.1288 0.9747 16 6 4.4758 12.2370 1.0458 17 6 5.1576 13.5646 1.2550 18 1 6.2339 13.6129 1.3303 19 6 4.4073 14.7173 1.3514 20 7 5.0024 15.8758 1.5335 21 14 2.5456 14.6336 1.2220 22 1 1.9638 14.4378 2.5740 23 1 2.0323 15.9000 0.6408 24 1 2.1609 13.4962 0.3480 25 6 5.8677 3.8567 0.8923 26 6 5.2404 2.6307 0.7962 27 1 -0.3633 0.5140 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 3.9375 0.4595 -0.0669 31 1 2.5526 3.5418 -1.0465 32 1 3.6748 5.7254 -0.8826 33 1 6.9088 6.2687 0.3881 34 1 6.4535 8.6480 1.6230 35 1 6.5663 8.8680 -0.1397 36 1 4.2713 9.8055 -0.1703 37 1 4.1579 9.5859 1.5924 38 1 6.0927 11.1040 1.9069 39 1 6.2066 11.3241 0.1442 40 1 3.9110 12.2620 0.1139 41 1 3.7978 12.0414 1.8765 42 1 4.4745 16.6869 1.6010 43 1 6.7974 3.9466 1.4344 44 1 5.6795 1.7614 1.2633 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805167242.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:30 Heat of formation + Delta-G solvation = -97.716438 kcal Electronic energy + Delta-G solvation = -25113.615308 eV Core-core repulsion = 21223.887801 eV Total energy + Delta-G solvation = -3889.727507 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.32863 -40.53694 -38.99010 -37.08958 -35.73506 -35.01555 -34.10372 -32.58717 -31.24781 -30.44458 -29.14592 -27.71158 -25.92386 -23.54376 -23.49035 -22.06789 -21.32844 -20.36073 -20.03708 -19.32426 -18.06254 -17.90695 -17.05688 -16.98092 -16.55051 -16.51317 -15.90944 -15.09057 -14.69233 -14.55036 -14.23877 -14.15616 -14.01396 -13.96319 -13.55462 -13.10297 -13.02917 -12.65180 -12.56787 -12.45398 -12.11107 -11.97854 -11.75638 -11.30296 -11.15466 -11.10235 -10.75322 -10.67916 -10.55008 -10.04382 -9.96976 -9.81546 -9.64619 -9.45463 -9.18080 -9.11570 -8.48625 -8.04850 -5.99886 -3.97423 0.86803 1.12111 1.63490 2.28441 2.55683 2.90008 3.36437 3.43454 3.49532 3.52804 3.70594 4.50958 4.53527 4.64584 4.67758 4.69527 4.76814 4.99216 5.04814 5.13170 5.18702 5.21476 5.25145 5.35086 5.46019 5.69881 5.73472 5.79361 5.95137 6.00328 6.07336 6.13248 6.20924 6.29791 6.39905 6.66826 6.76810 6.81088 6.84076 6.98729 7.21070 7.38436 7.51184 7.78554 7.85370 8.03737 8.58745 9.04935 9.63550 11.13540 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.020928 B = 0.001876 C = 0.001736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.577069 B =14920.778894 C =16121.716018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 O -0.370 6.370 3 C 0.645 3.355 4 O -0.549 6.549 5 N -0.648 5.648 6 C 0.131 3.869 7 C -0.098 4.098 8 C -0.103 4.103 9 C 0.141 3.859 10 N -0.681 5.681 11 C 0.511 3.489 12 O -0.514 6.514 13 C -0.137 4.137 14 C -0.108 4.108 15 C -0.102 4.102 16 C -0.016 4.016 17 C -0.520 4.520 18 H 0.071 0.929 19 C 0.065 3.935 20 N -0.906 5.906 21 Si 0.879 3.121 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.264 1.264 25 C -0.129 4.129 26 C -0.120 4.120 27 H 0.066 0.934 28 H 0.105 0.895 29 H 0.066 0.934 30 H 0.416 0.584 31 H 0.143 0.857 32 H 0.145 0.855 33 H 0.411 0.589 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.053 0.947 39 H 0.054 0.946 40 H 0.016 0.984 41 H 0.011 0.989 42 H 0.262 0.738 43 H 0.132 0.868 44 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.849 -37.123 -3.919 37.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 O -0.284 6.284 3 C 0.398 3.602 4 O -0.436 6.436 5 N -0.300 5.300 6 C 0.038 3.962 7 C -0.118 4.118 8 C -0.123 4.123 9 C 0.046 3.954 10 N -0.327 5.327 11 C 0.300 3.700 12 O -0.388 6.388 13 C -0.177 4.177 14 C -0.146 4.146 15 C -0.140 4.140 16 C -0.053 4.053 17 C -0.558 4.558 18 H 0.089 0.911 19 C -0.136 4.136 20 N -0.545 5.545 21 Si 0.707 3.293 22 H -0.203 1.203 23 H -0.215 1.215 24 H -0.189 1.189 25 C -0.150 4.150 26 C -0.141 4.141 27 H 0.085 0.915 28 H 0.123 0.877 29 H 0.085 0.915 30 H 0.253 0.747 31 H 0.160 0.840 32 H 0.163 0.837 33 H 0.247 0.753 34 H 0.114 0.886 35 H 0.114 0.886 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.034 0.966 41 H 0.030 0.970 42 H 0.072 0.928 43 H 0.150 0.850 44 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -0.517 -36.464 -3.929 36.679 hybrid contribution -0.345 -0.294 0.057 0.457 sum -0.862 -36.758 -3.872 36.972 Atomic orbital electron populations 1.23279 0.73662 1.03776 1.03168 1.86232 1.24745 1.30575 1.86871 1.18134 0.83151 0.82516 0.76373 1.91060 1.64326 1.34491 1.53732 1.41879 1.03390 1.09142 1.75607 1.17449 0.94184 0.84175 1.00353 1.21227 1.00653 0.91096 0.98849 1.21274 0.94922 0.98037 0.98098 1.17863 0.94873 0.85197 0.97485 1.43734 1.10547 1.04498 1.73880 1.21338 0.87938 0.85805 0.74907 1.90721 1.14387 1.86499 1.47218 1.21798 1.00612 0.90981 1.04281 1.21510 0.96729 0.93361 1.02960 1.21477 0.98997 0.92734 1.00806 1.19578 0.94986 0.94353 0.96403 1.21183 0.95343 0.89899 1.49376 0.91101 1.25038 0.98566 0.95391 0.94590 1.69920 1.35763 0.98236 1.50577 0.86778 0.86202 0.77522 0.78820 1.20313 1.21454 1.18894 1.20679 1.01728 0.91423 1.01161 1.20587 0.95702 0.98041 0.99732 0.91526 0.87663 0.91511 0.74735 0.83973 0.83733 0.75285 0.88570 0.88583 0.91652 0.91673 0.92811 0.92770 0.96593 0.97035 0.92822 0.85012 0.85146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.30 10.56 101.05 1.07 1.37 16 2 O -0.37 -2.91 10.62 -40.36 -0.43 -3.33 16 3 C 0.64 6.44 8.59 54.05 0.46 6.90 16 4 O -0.55 -7.40 13.57 -19.29 -0.26 -7.66 16 5 N -0.65 -5.01 5.35 -14.23 -0.08 -5.09 16 6 C 0.13 1.25 6.30 -83.61 -0.53 0.72 16 7 C -0.10 -1.16 8.69 -39.42 -0.34 -1.50 16 8 C -0.10 -1.29 8.69 -39.42 -0.34 -1.63 16 9 C 0.14 1.49 6.30 -83.62 -0.53 0.97 16 10 N -0.68 -6.49 5.34 -9.82 -0.05 -6.54 16 11 C 0.51 6.56 7.67 -10.98 -0.08 6.48 16 12 O -0.51 -8.74 13.43 5.55 0.07 -8.67 16 13 C -0.14 -1.62 5.70 -27.88 -0.16 -1.77 16 14 C -0.11 -1.76 4.50 -26.73 -0.12 -1.88 16 15 C -0.10 -1.99 5.15 -26.73 -0.14 -2.13 16 16 C -0.02 -0.39 4.04 -27.89 -0.11 -0.50 16 17 C -0.52 -15.14 9.66 -34.44 -0.33 -15.48 16 18 H 0.07 2.19 7.99 -52.48 -0.42 1.77 16 19 C 0.06 1.94 5.47 -17.82 -0.10 1.84 16 20 N -0.91 -28.43 13.96 55.43 0.77 -27.66 16 21 Si 0.88 22.49 27.47 -169.99 -4.67 17.82 16 22 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 23 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 24 H -0.26 -6.57 6.54 56.52 0.37 -6.20 16 25 C -0.13 -1.04 9.96 -39.42 -0.39 -1.43 16 26 C -0.12 -0.90 9.96 -39.42 -0.39 -1.30 16 27 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.11 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.42 1.77 8.93 -40.82 -0.36 1.41 16 31 H 0.14 1.83 6.22 -52.48 -0.33 1.50 16 32 H 0.15 2.06 6.24 -52.49 -0.33 1.74 16 33 H 0.41 2.40 8.82 -40.82 -0.36 2.04 16 34 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 36 H 0.06 1.13 8.10 -51.93 -0.42 0.71 16 37 H 0.06 1.14 8.10 -51.93 -0.42 0.72 16 38 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 41 H 0.01 0.28 7.57 -51.93 -0.39 -0.11 16 42 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 43 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 44 H 0.13 0.60 8.06 -52.48 -0.42 0.18 16 LS Contribution 372.32 15.07 5.61 5.61 Total: -1.00 -37.48 372.32 -7.44 -44.92 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -6.38 Total: -0.06 kcal Atomic # 6 Polarization: -7.30 SS G_CDS: -2.04 Total: -9.34 kcal Atomic # 7 Polarization: -39.93 SS G_CDS: 0.64 Total: -39.29 kcal Atomic # 8 Polarization: -19.05 SS G_CDS: -0.62 Total: -19.66 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -4.67 Total: 17.82 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -37.48 -7.44 -44.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805167242.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.796 kcal (2) G-P(sol) polarization free energy of solvation -37.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds