Wall clock time and date at job start Tue Mar 31 2020 12:10:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34654 * 117.00363 * 2 1 4 4 O 1.21518 * 119.99472 * 0.02562 * 3 2 1 5 5 N 1.34773 * 120.00526 * 179.97438 * 3 2 1 6 6 C 1.40115 * 120.00497 * 184.62544 * 5 3 2 7 7 C 1.38859 * 119.99508 * 324.90964 * 6 5 3 8 8 C 1.38052 * 120.00066 * 180.25148 * 7 6 5 9 9 C 1.38868 * 119.99598 * 359.51690 * 8 7 6 10 10 N 1.40085 * 120.00115 * 180.20334 * 9 8 7 11 11 C 1.34780 * 119.99927 * 35.37152 * 10 9 8 12 12 O 1.21289 * 119.99912 * 355.36282 * 11 10 9 13 13 C 1.50700 * 119.99978 * 175.36506 * 11 10 9 14 14 C 1.52998 * 109.46886 * 179.97438 * 13 11 10 15 15 C 1.53008 * 109.46959 * 179.97438 * 14 13 11 16 16 C 1.52998 * 109.46959 * 180.02562 * 15 14 13 17 17 C 1.50697 * 109.47249 * 180.02562 * 16 15 14 18 18 H 1.08007 * 119.99745 * 359.97438 * 17 16 15 19 19 C 1.37874 * 120.00470 * 180.02562 * 17 16 15 20 20 N 1.31509 * 120.00078 * 180.02562 * 19 17 16 21 21 Si 1.86804 * 119.99841 * 359.97438 * 19 17 16 22 22 H 1.48491 * 109.47077 * 90.00200 * 21 19 17 23 23 H 1.48500 * 109.47348 * 210.00470 * 21 19 17 24 24 H 1.48507 * 109.46987 * 330.00264 * 21 19 17 25 25 C 1.38873 * 119.99905 * 0.50776 * 9 8 7 26 26 C 1.38049 * 119.99499 * 359.72274 * 25 9 8 27 27 H 1.09001 * 109.46680 * 59.99356 * 1 2 3 28 28 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47148 * 299.99759 * 1 2 3 30 30 H 0.97004 * 119.99805 * 4.62975 * 5 3 2 31 31 H 1.08005 * 120.00423 * 359.97438 * 7 6 5 32 32 H 1.07997 * 120.00515 * 179.72409 * 8 7 6 33 33 H 0.97003 * 120.00391 * 215.36033 * 10 9 8 34 34 H 1.09000 * 109.46992 * 299.99773 * 13 11 10 35 35 H 1.08999 * 109.46910 * 59.99805 * 13 11 10 36 36 H 1.09000 * 109.47348 * 299.99835 * 14 13 11 37 37 H 1.08999 * 109.47276 * 60.00309 * 14 13 11 38 38 H 1.09000 * 109.47098 * 300.00162 * 15 14 13 39 39 H 1.08999 * 109.46731 * 60.00150 * 15 14 13 40 40 H 1.09000 * 109.47348 * 300.00009 * 16 15 14 41 41 H 1.09002 * 109.46895 * 60.00131 * 16 15 14 42 42 H 0.97006 * 119.99951 * 179.97438 * 20 19 17 43 43 H 1.07998 * 120.00200 * 179.69636 * 25 9 8 44 44 H 1.08003 * 120.00086 * 179.97438 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0634 1.1997 0.0000 4 8 1.4016 2.2189 0.0005 5 7 3.4093 1.2703 0.0005 6 6 4.0456 2.5148 0.0984 7 6 3.4816 3.6321 -0.5030 8 6 4.1111 4.8573 -0.4111 9 6 5.3033 4.9742 0.2913 10 7 5.9400 6.2183 0.3883 11 6 5.2066 7.3452 0.4820 12 8 3.9979 7.2908 0.3979 13 6 5.8885 8.6727 0.6913 14 6 4.8361 9.7810 0.7616 15 6 5.5283 11.1288 0.9747 16 6 4.4758 12.2370 1.0458 17 6 5.1576 13.5646 1.2550 18 1 6.2339 13.6129 1.3303 19 6 4.4073 14.7173 1.3514 20 7 5.0024 15.8758 1.5335 21 14 2.5456 14.6336 1.2220 22 1 1.9638 14.4378 2.5740 23 1 2.0323 15.9000 0.6408 24 1 2.1609 13.4962 0.3480 25 6 5.8677 3.8567 0.8923 26 6 5.2404 2.6307 0.7962 27 1 -0.3633 0.5140 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 3.9375 0.4595 -0.0669 31 1 2.5526 3.5418 -1.0465 32 1 3.6748 5.7254 -0.8826 33 1 6.9088 6.2687 0.3881 34 1 6.4535 8.6480 1.6230 35 1 6.5663 8.8680 -0.1397 36 1 4.2713 9.8055 -0.1703 37 1 4.1579 9.5859 1.5924 38 1 6.0927 11.1040 1.9069 39 1 6.2066 11.3241 0.1442 40 1 3.9110 12.2620 0.1139 41 1 3.7978 12.0414 1.8765 42 1 4.4745 16.6869 1.6010 43 1 6.7974 3.9466 1.4344 44 1 5.6795 1.7614 1.2633 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805167242.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:29 Heat of formation + Delta-G solvation = -124.865839 kcal Electronic energy + Delta-G solvation = -25114.792595 eV Core-core repulsion = 21223.887801 eV Total energy + Delta-G solvation = -3890.904793 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.07384 -41.41147 -39.79218 -37.83022 -36.78815 -36.39478 -34.95107 -34.58598 -32.07332 -31.92217 -30.04502 -28.39446 -27.41770 -24.60312 -24.30402 -23.34024 -22.16757 -21.71334 -21.30627 -20.04455 -18.89130 -18.77426 -18.68162 -17.88405 -17.70781 -17.25888 -16.92929 -16.34271 -15.99099 -15.60399 -15.34407 -15.14414 -15.03300 -14.72112 -14.66856 -14.27590 -14.06712 -13.81292 -13.71305 -13.67056 -13.45782 -13.05289 -12.87934 -12.76289 -12.34461 -12.08659 -11.97161 -11.90580 -11.76335 -11.53394 -11.46442 -11.34098 -11.25827 -10.85162 -10.76497 -10.75115 -9.94354 -8.81246 -8.30139 -6.32855 0.08917 0.38809 1.00301 1.33844 1.35355 1.46696 1.48007 1.67700 2.08011 2.35114 2.78652 3.05369 3.12788 3.70926 3.92749 3.98214 4.02371 4.15974 4.28445 4.31634 4.32704 4.41509 4.45405 4.60187 4.65966 4.68179 4.76256 4.77834 4.86543 5.06213 5.13437 5.14440 5.20196 5.25972 5.29025 5.32864 5.44399 5.49581 5.61306 5.66220 5.68810 5.99851 6.20291 6.29342 6.45754 6.75157 7.11347 7.17926 7.32027 8.86304 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.020928 B = 0.001876 C = 0.001736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.577069 B =14920.778894 C =16121.716018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 O -0.365 6.365 3 C 0.641 3.359 4 O -0.591 6.591 5 N -0.632 5.632 6 C 0.127 3.873 7 C -0.119 4.119 8 C -0.127 4.127 9 C 0.124 3.876 10 N -0.660 5.660 11 C 0.510 3.490 12 O -0.566 6.566 13 C -0.127 4.127 14 C -0.100 4.100 15 C -0.093 4.093 16 C -0.018 4.018 17 C -0.530 4.530 18 H 0.039 0.961 19 C 0.005 3.995 20 N -0.949 5.949 21 Si 0.945 3.055 22 H -0.268 1.268 23 H -0.281 1.281 24 H -0.254 1.254 25 C -0.114 4.114 26 C -0.105 4.105 27 H 0.061 0.939 28 H 0.142 0.858 29 H 0.059 0.941 30 H 0.435 0.565 31 H 0.119 0.881 32 H 0.114 0.886 33 H 0.432 0.568 34 H 0.124 0.876 35 H 0.124 0.876 36 H 0.050 0.950 37 H 0.050 0.950 38 H 0.059 0.941 39 H 0.059 0.941 40 H 0.012 0.988 41 H 0.011 0.989 42 H 0.266 0.734 43 H 0.171 0.829 44 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.144 -40.278 -3.141 40.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 O -0.278 6.278 3 C 0.395 3.605 4 O -0.481 6.481 5 N -0.286 5.286 6 C 0.034 3.966 7 C -0.140 4.140 8 C -0.148 4.148 9 C 0.029 3.971 10 N -0.308 5.308 11 C 0.300 3.700 12 O -0.443 6.443 13 C -0.166 4.166 14 C -0.138 4.138 15 C -0.131 4.131 16 C -0.056 4.056 17 C -0.568 4.568 18 H 0.057 0.943 19 C -0.192 4.192 20 N -0.590 5.590 21 Si 0.769 3.231 22 H -0.193 1.193 23 H -0.207 1.207 24 H -0.178 1.178 25 C -0.135 4.135 26 C -0.126 4.126 27 H 0.079 0.921 28 H 0.160 0.840 29 H 0.078 0.922 30 H 0.275 0.725 31 H 0.137 0.863 32 H 0.132 0.868 33 H 0.272 0.728 34 H 0.142 0.858 35 H 0.142 0.858 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.031 0.969 41 H 0.030 0.970 42 H 0.075 0.925 43 H 0.188 0.812 44 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 0.848 -39.691 -3.157 39.825 hybrid contribution -0.691 0.626 -0.188 0.951 sum 0.157 -39.065 -3.345 39.208 Atomic orbital electron populations 1.23567 0.72400 1.05971 1.02623 1.86254 1.25965 1.29151 1.86436 1.18398 0.83724 0.82527 0.75875 1.91047 1.65407 1.36035 1.55658 1.41762 1.02778 1.09442 1.74620 1.17588 0.94870 0.83971 1.00194 1.21083 1.00419 0.92225 1.00241 1.21098 0.96518 0.97330 0.99814 1.18024 0.94622 0.86320 0.98093 1.43474 1.11401 1.03423 1.72456 1.21486 0.87349 0.86875 0.74288 1.90724 1.16635 1.87213 1.49770 1.21694 0.99362 0.88644 1.06899 1.21306 0.97496 0.93393 1.01625 1.21337 0.97753 0.92597 1.01415 1.19588 0.96114 0.93900 0.95981 1.21556 0.94273 0.92225 1.48780 0.94263 1.25962 1.03852 0.94996 0.94357 1.70054 1.37836 0.99113 1.52014 0.85728 0.79921 0.78034 0.79403 1.19278 1.20688 1.17790 1.21092 1.02442 0.90244 0.99682 1.21034 0.94175 0.99340 0.98007 0.92056 0.84025 0.92190 0.72489 0.86344 0.86790 0.72823 0.85814 0.85837 0.93072 0.93096 0.92200 0.92203 0.96924 0.97039 0.92528 0.81188 0.80992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.49 10.56 113.37 1.20 1.68 16 2 O -0.36 -5.37 10.62 -55.64 -0.59 -5.96 16 3 C 0.64 12.69 8.59 129.79 1.12 13.81 16 4 O -0.59 -16.76 13.57 19.78 0.27 -16.50 16 5 N -0.63 -8.86 5.35 -429.33 -2.30 -11.16 16 6 C 0.13 2.25 6.30 38.11 0.24 2.49 16 7 C -0.12 -2.96 8.69 22.37 0.19 -2.77 16 8 C -0.13 -3.33 8.69 22.38 0.19 -3.14 16 9 C 0.12 2.45 6.30 38.12 0.24 2.69 16 10 N -0.66 -11.16 5.34 -303.37 -1.62 -12.78 16 11 C 0.51 12.56 7.67 87.66 0.67 13.23 16 12 O -0.57 -19.80 13.43 -3.06 -0.04 -19.84 16 13 C -0.13 -2.69 5.70 29.85 0.17 -2.52 16 14 C -0.10 -3.19 4.50 30.60 0.14 -3.05 16 15 C -0.09 -3.54 5.15 30.60 0.16 -3.38 16 16 C -0.02 -0.90 4.04 29.85 0.12 -0.78 16 17 C -0.53 -31.36 9.66 25.60 0.25 -31.11 16 18 H 0.04 2.49 7.99 -2.91 -0.02 2.47 16 19 C 0.01 0.31 5.47 84.65 0.46 0.77 16 20 N -0.95 -60.65 13.96 21.45 0.30 -60.35 16 21 Si 0.95 46.51 27.47 68.60 1.88 48.40 16 22 H -0.27 -12.69 7.11 99.48 0.71 -11.99 16 23 H -0.28 -13.42 7.11 99.48 0.71 -12.72 16 24 H -0.25 -11.97 6.54 99.48 0.65 -11.32 16 25 C -0.11 -1.40 9.96 22.38 0.22 -1.18 16 26 C -0.11 -1.19 9.96 22.37 0.22 -0.97 16 27 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.14 0.35 8.14 -2.39 -0.02 0.33 16 29 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.43 2.55 8.93 -92.71 -0.83 1.72 16 31 H 0.12 3.43 6.22 -2.91 -0.02 3.41 16 32 H 0.11 3.63 6.24 -2.91 -0.02 3.61 16 33 H 0.43 3.44 8.82 -92.71 -0.82 2.63 16 34 H 0.12 2.00 8.14 -2.39 -0.02 1.98 16 35 H 0.12 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.05 1.76 8.10 -2.39 -0.02 1.74 16 37 H 0.05 1.76 8.10 -2.39 -0.02 1.74 16 38 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 39 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 40 H 0.01 0.61 7.20 -2.39 -0.02 0.60 16 41 H 0.01 0.55 7.57 -2.39 -0.02 0.53 16 42 H 0.27 15.85 8.31 -92.70 -0.77 15.08 16 43 H 0.17 0.81 8.06 -2.91 -0.02 0.79 16 44 H 0.17 0.56 8.06 -2.91 -0.02 0.54 16 Total: -1.00 -86.45 372.32 2.83 -83.62 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -0.67 Total: 8.78 kcal Atomic # 6 Polarization: -19.81 SS G_CDS: 5.60 Total: -14.21 kcal Atomic # 7 Polarization: -80.67 SS G_CDS: -3.62 Total: -84.28 kcal Atomic # 8 Polarization: -41.94 SS G_CDS: -0.36 Total: -42.30 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 1.88 Total: 48.40 kcal Total: -86.45 2.83 -83.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805167242.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.247 kcal (2) G-P(sol) polarization free energy of solvation -86.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds