Wall clock time and date at job start Tue Mar 31 2020 12:17:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00112 * 2 1 4 4 H 1.48500 * 109.47093 * 240.00180 * 3 2 1 5 5 H 1.48495 * 109.47002 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47239 * 119.99899 * 3 2 1 7 7 C 1.37885 * 120.00035 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99675 * 179.72276 * 7 2 1 9 9 C 1.50695 * 119.99721 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46637 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.46963 * 180.02562 * 10 9 7 12 12 O 1.20831 * 120.00190 * 0.02562 * 11 10 9 13 13 O 1.34224 * 120.00062 * 180.02562 * 11 10 9 14 14 C 1.45210 * 117.00094 * 180.02562 * 13 11 10 15 15 H 1.08999 * 109.47260 * 29.99414 * 14 13 11 16 16 C 1.53002 * 109.46797 * 270.00009 * 14 13 11 17 17 C 1.52998 * 109.47046 * 180.02562 * 16 14 13 18 18 C 1.52997 * 109.47359 * 59.99850 * 17 16 14 19 19 C 1.53002 * 109.47164 * 300.00077 * 18 17 16 20 20 C 1.52998 * 109.47111 * 150.00030 * 14 13 11 21 21 H 1.08999 * 109.47562 * 59.99568 * 20 14 13 22 22 C 1.50706 * 109.47086 * 299.99590 * 20 14 13 23 23 C 1.38222 * 120.01099 * 299.72905 * 22 20 14 24 24 C 1.38219 * 120.02340 * 179.72200 * 23 22 20 25 25 C 1.38273 * 120.04787 * 0.55075 * 24 23 22 26 26 C 1.38168 * 120.03045 * 359.72416 * 25 24 23 27 27 C 1.38430 * 120.01041 * 120.00562 * 22 20 14 28 28 F 1.35103 * 120.02797 * 0.02562 * 27 22 20 29 29 H 0.97000 * 119.99706 * 359.97438 * 1 2 3 30 30 H 1.08992 * 109.47177 * 299.99952 * 9 7 2 31 31 H 1.08997 * 109.47039 * 60.00401 * 9 7 2 32 32 H 1.09000 * 109.47266 * 299.99671 * 10 9 7 33 33 H 1.08997 * 109.46955 * 60.00501 * 10 9 7 34 34 H 1.09004 * 109.47165 * 299.99890 * 16 14 13 35 35 H 1.09001 * 109.47278 * 59.99269 * 16 14 13 36 36 H 1.08999 * 109.47126 * 299.99475 * 17 16 14 37 37 H 1.09003 * 109.46675 * 179.97438 * 17 16 14 38 38 H 1.08994 * 109.47363 * 180.02562 * 18 17 16 39 39 H 1.08999 * 109.47307 * 59.99736 * 18 17 16 40 40 H 1.09004 * 109.47165 * 299.99851 * 19 18 17 41 41 H 1.09002 * 109.47431 * 179.97438 * 19 18 17 42 42 H 1.07995 * 119.98687 * 359.97438 * 23 22 20 43 43 H 1.07997 * 119.97510 * 180.27831 * 24 23 22 44 44 H 1.08003 * 119.98452 * 179.70582 * 25 24 23 45 45 H 1.07996 * 120.01992 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 -0.0040 9 6 1.2510 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4919 -4.9672 -0.0001 12 8 0.2836 -4.9672 -0.0010 13 8 2.1630 -6.1296 0.0003 14 6 1.3721 -7.3474 -0.0009 15 1 0.4284 -7.1673 -0.5157 16 6 1.0928 -7.7755 1.4412 17 6 0.2601 -9.0590 1.4399 18 6 1.0313 -10.1667 0.7194 19 6 1.3107 -9.7386 -0.7227 20 6 2.1429 -8.4553 -0.7216 21 1 3.0867 -8.6354 -0.2069 22 6 2.4180 -8.0336 -2.1421 23 6 1.3676 -7.7542 -2.9961 24 6 1.6198 -7.3619 -4.2972 25 6 2.9224 -7.2595 -4.7494 26 6 3.9739 -7.5437 -3.8992 27 6 3.7226 -7.9315 -2.5937 28 9 4.7498 -8.2102 -1.7616 29 1 -0.4850 0.8401 0.0004 30 1 0.6241 -2.5567 0.8902 31 1 0.6248 -2.5571 -0.8897 32 1 2.8720 -3.6043 -0.8895 33 1 2.8719 -3.6043 0.8905 34 1 2.0366 -7.9556 1.9560 35 1 0.5438 -6.9862 1.9547 36 1 -0.6837 -8.8793 0.9251 37 1 0.0615 -9.3642 2.4674 38 1 0.4379 -11.0809 0.7182 39 1 1.9751 -10.3464 1.2343 40 1 0.3669 -9.5589 -1.2376 41 1 1.8605 -10.5275 -1.2359 42 1 0.3497 -7.8386 -2.6453 43 1 0.7986 -7.1395 -4.9624 44 1 3.1181 -6.9574 -5.7677 45 1 4.9912 -7.4632 -4.2525 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000839104307.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:02 Heat of formation + Delta-G solvation = -142.080107 kcal Electronic energy + Delta-G solvation = -27391.597657 eV Core-core repulsion = 23480.026436 eV Total energy + Delta-G solvation = -3911.571221 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -48.92163 -40.54170 -39.23640 -37.84699 -35.66725 -33.55696 -32.96627 -31.21338 -30.61917 -30.22938 -28.78347 -26.01315 -23.91975 -23.24069 -22.80583 -21.70584 -21.20866 -19.91548 -19.60275 -17.73595 -17.34583 -16.65058 -16.40718 -16.03708 -15.76336 -15.59972 -15.38876 -14.66753 -14.45876 -14.22650 -14.18497 -14.14218 -13.54752 -13.42771 -13.19249 -12.71346 -12.67361 -12.53928 -12.22917 -12.11159 -12.02894 -11.45235 -11.36462 -11.20788 -11.14058 -10.95135 -10.90035 -10.81660 -10.65470 -10.47003 -10.04823 -9.97938 -9.84711 -9.50747 -9.17382 -9.03946 -8.70132 -8.36092 -6.00176 -4.04864 1.07194 1.10750 2.88374 3.11715 3.33698 3.38147 3.40649 3.47412 4.15529 4.26704 4.44089 4.47958 4.61980 4.74654 4.81379 4.90182 4.93768 5.00185 5.13242 5.19232 5.19430 5.23879 5.28066 5.35138 5.46970 5.58607 5.65869 5.79119 5.84280 5.84470 5.90625 5.92804 5.96855 6.07414 6.10194 6.15239 6.16148 6.23650 6.29288 6.32435 6.71796 6.79678 7.01758 7.67766 7.75514 7.99576 8.29257 8.46710 9.01964 9.58974 11.10824 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.012870 B = 0.003578 C = 0.003095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2175.029682 B = 7824.436528 C = 9044.121840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.060 3.940 3 Si 0.895 3.105 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.529 4.529 8 H 0.058 0.942 9 C 0.035 3.965 10 C -0.104 4.104 11 C 0.457 3.543 12 O -0.506 6.506 13 O -0.357 6.357 14 C 0.097 3.903 15 H 0.085 0.915 16 C -0.136 4.136 17 C -0.116 4.116 18 C -0.122 4.122 19 C -0.106 4.106 20 C -0.045 4.045 21 H 0.093 0.907 22 C -0.104 4.104 23 C -0.088 4.088 24 C -0.126 4.126 25 C -0.095 4.095 26 C -0.153 4.153 27 C 0.107 3.893 28 F -0.137 7.137 29 H 0.262 0.738 30 H 0.025 0.975 31 H 0.025 0.975 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.066 0.934 37 H 0.069 0.931 38 H 0.067 0.933 39 H 0.066 0.934 40 H 0.069 0.931 41 H 0.071 0.929 42 H 0.129 0.871 43 H 0.129 0.871 44 H 0.131 0.869 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.376 -22.886 -4.962 23.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.142 4.142 3 Si 0.723 3.277 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.567 4.567 8 H 0.076 0.924 9 C -0.002 4.002 10 C -0.142 4.142 11 C 0.301 3.699 12 O -0.393 6.393 13 O -0.275 6.275 14 C 0.042 3.958 15 H 0.103 0.897 16 C -0.174 4.174 17 C -0.154 4.154 18 C -0.159 4.159 19 C -0.144 4.144 20 C -0.064 4.064 21 H 0.111 0.889 22 C -0.105 4.105 23 C -0.106 4.106 24 C -0.144 4.144 25 C -0.113 4.113 26 C -0.172 4.172 27 C 0.088 3.912 28 F -0.116 7.116 29 H 0.072 0.928 30 H 0.044 0.956 31 H 0.043 0.957 32 H 0.108 0.892 33 H 0.109 0.891 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.087 0.913 41 H 0.090 0.910 42 H 0.147 0.853 43 H 0.147 0.853 44 H 0.149 0.851 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 3.876 -22.807 -4.925 23.652 hybrid contribution 0.542 0.988 0.118 1.133 sum 4.418 -21.819 -4.807 22.774 Atomic orbital electron populations 1.69984 1.06084 1.26825 1.49940 1.25009 0.94839 0.99265 0.95114 0.86616 0.79534 0.82934 0.78662 1.20167 1.21242 1.20148 1.21129 0.93031 0.90692 1.51824 0.92410 1.18989 0.93167 0.89249 0.98787 1.21751 1.00669 0.87907 1.03839 1.24722 0.87953 0.85895 0.71367 1.90607 1.15835 1.87578 1.45281 1.86637 1.41808 1.14692 1.84376 1.22579 0.94749 0.81978 0.96504 0.89746 1.21949 1.01188 0.98304 0.95959 1.21499 0.98748 0.94162 1.00982 1.21591 1.00769 0.98245 0.95290 1.21571 0.99904 0.95449 0.97451 1.20206 1.00825 0.94132 0.91217 0.88875 1.19767 0.91812 1.02454 0.96505 1.20919 0.98645 0.97776 0.93272 1.21198 0.97136 1.00061 0.96012 1.21003 0.92086 0.98484 0.99725 1.21126 1.00824 1.02838 0.92421 1.17497 0.83799 1.01510 0.88426 1.91477 1.57616 1.91201 1.71283 0.92820 0.95632 0.95679 0.89198 0.89092 0.90906 0.90817 0.91534 0.91270 0.91422 0.91561 0.91258 0.90983 0.85297 0.85310 0.85098 0.84821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.19 13.29 55.43 0.74 -26.45 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 3 Si 0.90 21.64 29.54 -169.99 -5.02 16.62 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.53 -15.00 9.11 -34.44 -0.31 -15.32 16 8 H 0.06 1.55 7.74 -52.48 -0.41 1.15 16 9 C 0.04 0.95 4.26 -27.88 -0.12 0.83 16 10 C -0.10 -2.22 5.75 -27.88 -0.16 -2.38 16 11 C 0.46 9.32 7.93 36.01 0.29 9.61 16 12 O -0.51 -11.60 15.20 -18.75 -0.29 -11.89 16 13 O -0.36 -6.23 9.51 -39.24 -0.37 -6.61 16 14 C 0.10 1.37 1.71 -26.73 -0.05 1.33 16 15 H 0.08 1.29 6.42 -51.93 -0.33 0.95 16 16 C -0.14 -1.69 5.56 -26.73 -0.15 -1.84 16 17 C -0.12 -1.10 5.92 -26.73 -0.16 -1.26 16 18 C -0.12 -0.98 5.92 -26.73 -0.16 -1.14 16 19 C -0.11 -0.95 5.01 -26.75 -0.13 -1.09 16 20 C -0.05 -0.53 2.09 -91.79 -0.19 -0.72 16 21 H 0.09 1.14 7.13 -51.93 -0.37 0.77 16 22 C -0.10 -1.31 4.44 -104.55 -0.46 -1.77 16 23 C -0.09 -1.03 8.71 -39.59 -0.34 -1.38 16 24 C -0.13 -1.34 10.04 -39.58 -0.40 -1.74 16 25 C -0.09 -0.96 10.04 -39.59 -0.40 -1.36 16 26 C -0.15 -1.71 10.03 -39.51 -0.40 -2.10 16 27 C 0.11 1.38 7.25 -39.42 -0.29 1.09 16 28 F -0.14 -1.86 16.19 2.25 0.04 -1.82 16 29 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 30 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 31 H 0.02 0.73 8.10 -51.93 -0.42 0.31 16 32 H 0.09 1.81 8.14 -51.93 -0.42 1.38 16 33 H 0.09 1.80 8.14 -51.93 -0.42 1.38 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.07 0.59 7.37 -51.93 -0.38 0.21 16 41 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.13 1.38 7.10 -52.49 -0.37 1.01 16 43 H 0.13 1.11 8.06 -52.49 -0.42 0.68 16 44 H 0.13 0.99 8.06 -52.48 -0.42 0.57 16 45 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 LS Contribution 372.03 15.07 5.61 5.61 Total: -1.00 -32.70 372.03 -9.74 -42.45 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: -6.92 Total: -0.26 kcal Atomic # 6 Polarization: -14.10 SS G_CDS: -3.53 Total: -17.63 kcal Atomic # 7 Polarization: -27.19 SS G_CDS: 0.74 Total: -26.45 kcal Atomic # 8 Polarization: -17.83 SS G_CDS: -0.66 Total: -18.49 kcal Atomic # 9 Polarization: -1.86 SS G_CDS: 0.04 Total: -1.82 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.70 -9.74 -42.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839104307.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.635 kcal (2) G-P(sol) polarization free energy of solvation -32.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds