Wall clock time and date at job start Tue Mar 31 2020 12:17:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00112 * 2 1 4 4 H 1.48500 * 109.47093 * 240.00180 * 3 2 1 5 5 H 1.48495 * 109.47002 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47239 * 119.99899 * 3 2 1 7 7 C 1.37885 * 120.00035 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99675 * 179.72276 * 7 2 1 9 9 C 1.50695 * 119.99721 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46637 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.46963 * 180.02562 * 10 9 7 12 12 O 1.20831 * 120.00190 * 0.02562 * 11 10 9 13 13 O 1.34224 * 120.00062 * 180.02562 * 11 10 9 14 14 C 1.45210 * 117.00094 * 180.02562 * 13 11 10 15 15 H 1.08999 * 109.47260 * 29.99414 * 14 13 11 16 16 C 1.53002 * 109.46797 * 270.00009 * 14 13 11 17 17 C 1.52998 * 109.47046 * 180.02562 * 16 14 13 18 18 C 1.52997 * 109.47359 * 59.99850 * 17 16 14 19 19 C 1.53002 * 109.47164 * 300.00077 * 18 17 16 20 20 C 1.52998 * 109.47111 * 150.00030 * 14 13 11 21 21 H 1.08999 * 109.47562 * 59.99568 * 20 14 13 22 22 C 1.50706 * 109.47086 * 299.99590 * 20 14 13 23 23 C 1.38222 * 120.01099 * 299.72905 * 22 20 14 24 24 C 1.38219 * 120.02340 * 179.72200 * 23 22 20 25 25 C 1.38273 * 120.04787 * 0.55075 * 24 23 22 26 26 C 1.38168 * 120.03045 * 359.72416 * 25 24 23 27 27 C 1.38430 * 120.01041 * 120.00562 * 22 20 14 28 28 F 1.35103 * 120.02797 * 0.02562 * 27 22 20 29 29 H 0.97000 * 119.99706 * 359.97438 * 1 2 3 30 30 H 1.08992 * 109.47177 * 299.99952 * 9 7 2 31 31 H 1.08997 * 109.47039 * 60.00401 * 9 7 2 32 32 H 1.09000 * 109.47266 * 299.99671 * 10 9 7 33 33 H 1.08997 * 109.46955 * 60.00501 * 10 9 7 34 34 H 1.09004 * 109.47165 * 299.99890 * 16 14 13 35 35 H 1.09001 * 109.47278 * 59.99269 * 16 14 13 36 36 H 1.08999 * 109.47126 * 299.99475 * 17 16 14 37 37 H 1.09003 * 109.46675 * 179.97438 * 17 16 14 38 38 H 1.08994 * 109.47363 * 180.02562 * 18 17 16 39 39 H 1.08999 * 109.47307 * 59.99736 * 18 17 16 40 40 H 1.09004 * 109.47165 * 299.99851 * 19 18 17 41 41 H 1.09002 * 109.47431 * 179.97438 * 19 18 17 42 42 H 1.07995 * 119.98687 * 359.97438 * 23 22 20 43 43 H 1.07997 * 119.97510 * 180.27831 * 24 23 22 44 44 H 1.08003 * 119.98452 * 179.70582 * 25 24 23 45 45 H 1.07996 * 120.01992 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 -0.0040 9 6 1.2510 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4919 -4.9672 -0.0001 12 8 0.2836 -4.9672 -0.0010 13 8 2.1630 -6.1296 0.0003 14 6 1.3721 -7.3474 -0.0009 15 1 0.4284 -7.1673 -0.5157 16 6 1.0928 -7.7755 1.4412 17 6 0.2601 -9.0590 1.4399 18 6 1.0313 -10.1667 0.7194 19 6 1.3107 -9.7386 -0.7227 20 6 2.1429 -8.4553 -0.7216 21 1 3.0867 -8.6354 -0.2069 22 6 2.4180 -8.0336 -2.1421 23 6 1.3676 -7.7542 -2.9961 24 6 1.6198 -7.3619 -4.2972 25 6 2.9224 -7.2595 -4.7494 26 6 3.9739 -7.5437 -3.8992 27 6 3.7226 -7.9315 -2.5937 28 9 4.7498 -8.2102 -1.7616 29 1 -0.4850 0.8401 0.0004 30 1 0.6241 -2.5567 0.8902 31 1 0.6248 -2.5571 -0.8897 32 1 2.8720 -3.6043 -0.8895 33 1 2.8719 -3.6043 0.8905 34 1 2.0366 -7.9556 1.9560 35 1 0.5438 -6.9862 1.9547 36 1 -0.6837 -8.8793 0.9251 37 1 0.0615 -9.3642 2.4674 38 1 0.4379 -11.0809 0.7182 39 1 1.9751 -10.3464 1.2343 40 1 0.3669 -9.5589 -1.2376 41 1 1.8605 -10.5275 -1.2359 42 1 0.3497 -7.8386 -2.6453 43 1 0.7986 -7.1395 -4.9624 44 1 3.1181 -6.9574 -5.7677 45 1 4.9912 -7.4632 -4.2525 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000839104307.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:01 Heat of formation + Delta-G solvation = -157.388309 kcal Electronic energy + Delta-G solvation = -27392.261471 eV Core-core repulsion = 23480.026436 eV Total energy + Delta-G solvation = -3912.235035 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.89784 -41.86707 -40.37221 -38.85537 -37.09651 -35.66583 -33.82671 -33.19635 -31.47797 -31.24773 -29.71370 -28.00121 -24.90583 -24.63193 -23.68998 -23.22187 -22.07872 -21.38170 -20.72587 -19.10869 -18.62172 -18.25116 -17.48676 -17.38561 -17.22053 -16.66297 -16.54366 -16.49061 -15.63527 -15.29357 -15.15861 -15.01765 -14.80168 -14.49528 -14.32375 -14.11137 -14.06212 -13.84477 -13.56608 -13.25479 -13.12988 -12.85522 -12.81742 -12.55756 -12.41657 -12.26187 -12.06518 -12.03652 -11.89985 -11.77962 -11.72184 -11.43458 -11.41020 -11.21248 -10.99604 -10.58318 -9.91464 -9.60076 -8.21126 -6.35283 0.18908 0.23784 1.22988 1.41936 1.46302 1.53882 1.70167 2.42198 2.60695 3.12337 3.26756 3.35329 3.52402 3.71542 3.84155 3.91438 3.95552 4.07215 4.13594 4.17478 4.23829 4.33108 4.37666 4.38844 4.39769 4.44068 4.46608 4.73788 4.78709 4.81116 4.95332 4.99208 5.04465 5.07479 5.08616 5.21076 5.22959 5.23809 5.35427 5.38508 5.43556 5.46321 5.52059 5.53144 5.78190 5.94479 6.11709 6.78080 6.85385 7.34877 8.91312 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.012870 B = 0.003578 C = 0.003095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2175.029682 B = 7824.436528 C = 9044.121840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.001 4.001 3 Si 0.973 3.027 4 H -0.263 1.263 5 H -0.285 1.285 6 H -0.263 1.263 7 C -0.548 4.548 8 H 0.074 0.926 9 C 0.044 3.956 10 C -0.096 4.096 11 C 0.465 3.535 12 O -0.539 6.539 13 O -0.354 6.354 14 C 0.092 3.908 15 H 0.071 0.929 16 C -0.136 4.136 17 C -0.112 4.112 18 C -0.116 4.116 19 C -0.102 4.102 20 C -0.038 4.038 21 H 0.088 0.912 22 C -0.119 4.119 23 C -0.103 4.103 24 C -0.131 4.131 25 C -0.094 4.094 26 C -0.157 4.157 27 C 0.082 3.918 28 F -0.146 7.146 29 H 0.265 0.735 30 H -0.010 1.010 31 H -0.010 1.010 32 H 0.108 0.892 33 H 0.111 0.889 34 H 0.079 0.921 35 H 0.048 0.952 36 H 0.063 0.937 37 H 0.084 0.916 38 H 0.090 0.910 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.085 0.915 42 H 0.132 0.868 43 H 0.149 0.851 44 H 0.160 0.840 45 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.969 -23.677 -5.650 25.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.199 4.199 3 Si 0.797 3.203 4 H -0.187 1.187 5 H -0.211 1.211 6 H -0.188 1.188 7 C -0.585 4.585 8 H 0.092 0.908 9 C 0.006 3.994 10 C -0.133 4.133 11 C 0.310 3.690 12 O -0.429 6.429 13 O -0.271 6.271 14 C 0.037 3.963 15 H 0.089 0.911 16 C -0.173 4.173 17 C -0.150 4.150 18 C -0.154 4.154 19 C -0.139 4.139 20 C -0.057 4.057 21 H 0.106 0.894 22 C -0.120 4.120 23 C -0.121 4.121 24 C -0.149 4.149 25 C -0.112 4.112 26 C -0.176 4.176 27 C 0.063 3.937 28 F -0.125 7.125 29 H 0.073 0.927 30 H 0.009 0.991 31 H 0.008 0.992 32 H 0.126 0.874 33 H 0.129 0.871 34 H 0.098 0.902 35 H 0.067 0.933 36 H 0.081 0.919 37 H 0.103 0.897 38 H 0.109 0.891 39 H 0.090 0.910 40 H 0.091 0.909 41 H 0.104 0.896 42 H 0.150 0.850 43 H 0.166 0.834 44 H 0.178 0.822 45 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 5.499 -23.633 -5.611 24.905 hybrid contribution 0.016 1.170 0.294 1.207 sum 5.515 -22.463 -5.317 23.733 Atomic orbital electron populations 1.70148 1.08182 1.28042 1.50994 1.26072 0.95721 1.03735 0.94341 0.85384 0.78118 0.77359 0.79478 1.18746 1.21056 1.18783 1.21592 0.93987 0.91368 1.51573 0.90751 1.18743 0.93477 0.91729 0.95408 1.21503 0.99469 0.86731 1.05647 1.24385 0.87231 0.86635 0.70714 1.90597 1.17163 1.88171 1.46958 1.86590 1.41943 1.14928 1.83630 1.22938 0.94265 0.81064 0.97995 0.91139 1.21972 1.01788 0.99153 0.94428 1.21508 0.98182 0.93021 1.02269 1.21589 1.01196 0.98337 0.94237 1.21594 0.99701 0.94163 0.98480 1.20213 1.00641 0.94239 0.90589 0.89373 1.19908 0.92057 1.03079 0.96928 1.21097 0.98712 0.98341 0.93952 1.21543 0.98253 0.99224 0.95873 1.21377 0.91506 0.97415 1.00904 1.21434 1.02173 1.02105 0.91864 1.17792 0.83770 1.02900 0.89250 1.91445 1.57926 1.91464 1.71670 0.92673 0.99139 0.99178 0.87438 0.87074 0.90186 0.93321 0.91851 0.89716 0.89129 0.90975 0.90919 0.89632 0.85019 0.83373 0.82217 0.83044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.47 13.29 21.45 0.28 -58.18 16 2 C 0.00 -0.03 5.46 84.66 0.46 0.43 16 3 Si 0.97 44.13 29.54 68.60 2.03 46.15 16 4 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 5 H -0.29 -12.74 7.11 99.48 0.71 -12.03 16 6 H -0.26 -11.33 7.11 99.48 0.71 -10.63 16 7 C -0.55 -31.28 9.11 25.60 0.23 -31.04 16 8 H 0.07 3.91 7.74 -2.91 -0.02 3.89 16 9 C 0.04 2.44 4.26 29.85 0.13 2.56 16 10 C -0.10 -4.15 5.75 29.85 0.17 -3.98 16 11 C 0.47 19.51 7.93 71.24 0.56 20.07 16 12 O -0.54 -25.91 15.20 21.95 0.33 -25.57 16 13 O -0.35 -12.50 9.51 -51.36 -0.49 -12.99 16 14 C 0.09 2.63 1.71 30.59 0.05 2.68 16 15 H 0.07 2.23 6.42 -2.39 -0.02 2.22 16 16 C -0.14 -3.38 5.56 30.59 0.17 -3.21 16 17 C -0.11 -2.00 5.92 30.59 0.18 -1.82 16 18 C -0.12 -1.62 5.92 30.59 0.18 -1.44 16 19 C -0.10 -1.67 5.01 30.58 0.15 -1.52 16 20 C -0.04 -0.88 2.09 -11.55 -0.02 -0.91 16 21 H 0.09 2.11 7.13 -2.39 -0.02 2.09 16 22 C -0.12 -2.93 4.44 -19.82 -0.09 -3.02 16 23 C -0.10 -2.38 8.71 22.26 0.19 -2.18 16 24 C -0.13 -2.62 10.04 22.27 0.22 -2.39 16 25 C -0.09 -1.73 10.04 22.26 0.22 -1.50 16 26 C -0.16 -3.28 10.03 22.31 0.22 -3.05 16 27 C 0.08 2.06 7.25 22.38 0.16 2.22 16 28 F -0.15 -3.91 16.19 44.97 0.73 -3.19 16 29 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 30 H -0.01 -0.61 8.10 -2.39 -0.02 -0.63 16 31 H -0.01 -0.63 8.10 -2.39 -0.02 -0.65 16 32 H 0.11 4.26 8.14 -2.39 -0.02 4.24 16 33 H 0.11 4.34 8.14 -2.39 -0.02 4.32 16 34 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.07 1.15 7.37 -2.39 -0.02 1.13 16 41 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 42 H 0.13 2.84 7.10 -2.91 -0.02 2.82 16 43 H 0.15 2.29 8.06 -2.91 -0.02 2.27 16 44 H 0.16 1.93 8.06 -2.91 -0.02 1.91 16 45 H 0.15 2.49 8.06 -2.91 -0.02 2.47 16 Total: -1.00 -72.71 372.03 7.07 -65.64 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: 0.97 Total: 16.23 kcal Atomic # 6 Polarization: -31.31 SS G_CDS: 3.21 Total: -28.09 kcal Atomic # 7 Polarization: -58.47 SS G_CDS: 0.28 Total: -58.18 kcal Atomic # 8 Polarization: -38.41 SS G_CDS: -0.15 Total: -38.57 kcal Atomic # 9 Polarization: -3.91 SS G_CDS: 0.73 Total: -3.19 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.15 kcal Total: -72.71 7.07 -65.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839104307.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.745 kcal (2) G-P(sol) polarization free energy of solvation -72.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds