Wall clock time and date at job start Tue Mar 31 2020 12:39:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86794 * 119.99480 * 2 1 4 4 H 1.48507 * 109.47249 * 270.00254 * 3 2 1 5 5 H 1.48498 * 109.47561 * 30.00693 * 3 2 1 6 6 H 1.48505 * 109.46718 * 150.00657 * 3 2 1 7 7 C 1.37870 * 120.00039 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00204 * 156.53509 * 7 2 1 9 9 C 1.50700 * 120.00203 * 336.53393 * 7 2 1 10 10 C 1.52997 * 115.55099 * 332.25795 * 9 7 2 11 11 O 1.45201 * 109.46878 * 266.37401 * 10 9 7 12 12 C 1.34234 * 116.99681 * 175.27195 * 11 10 9 13 13 O 1.20830 * 120.00174 * 5.53629 * 12 11 10 14 14 C 1.50703 * 119.99759 * 185.54298 * 12 11 10 15 15 N 1.46496 * 109.47047 * 301.38709 * 14 12 11 16 16 C 1.34600 * 126.43563 * 70.71609 * 15 14 12 17 17 N 1.31079 * 106.67650 * 180.02562 * 16 15 14 18 18 N 1.28837 * 107.98876 * 0.02562 * 17 16 15 19 19 N 1.28738 * 109.40304 * 359.97438 * 18 17 16 20 20 C 1.52998 * 109.47192 * 61.39125 * 14 12 11 21 21 C 1.53001 * 109.47263 * 180.02562 * 20 14 12 22 22 C 1.53005 * 109.46870 * 299.99917 * 21 20 14 23 23 C 1.52998 * 109.47109 * 59.99989 * 22 21 20 24 24 C 1.52998 * 109.46753 * 181.38658 * 14 12 11 25 25 C 1.53002 * 117.51798 * 117.95643 * 9 7 2 26 26 C 1.53000 * 60.00154 * 107.48376 * 25 9 7 27 27 H 0.96996 * 120.00624 * 5.01740 * 1 2 3 28 28 H 1.08997 * 109.47335 * 146.37439 * 10 9 7 29 29 H 1.08997 * 109.47088 * 26.37136 * 10 9 7 30 30 H 1.07996 * 126.66599 * 0.07527 * 16 15 14 31 31 H 1.09006 * 109.46734 * 299.99601 * 20 14 12 32 32 H 1.08997 * 109.47785 * 59.99613 * 20 14 12 33 33 H 1.08991 * 109.47516 * 179.97438 * 21 20 14 34 34 H 1.09007 * 109.46974 * 59.99607 * 21 20 14 35 35 H 1.08997 * 109.46575 * 299.99520 * 22 21 20 36 36 H 1.08992 * 109.46963 * 179.97438 * 22 21 20 37 37 H 1.09005 * 109.47209 * 180.02562 * 23 22 21 38 38 H 1.08997 * 109.47487 * 59.99813 * 23 22 21 39 39 H 1.08997 * 109.47563 * 299.99706 * 24 14 12 40 40 H 1.09007 * 109.47297 * 60.00115 * 24 14 12 41 41 H 1.08998 * 117.50104 * 214.97017 * 25 9 7 42 42 H 1.09006 * 117.49867 * 359.97438 * 25 9 7 43 43 H 1.09004 * 117.50168 * 252.51523 * 26 25 9 44 44 H 1.08998 * 117.52016 * 107.48203 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4964 2.0466 -1.4001 5 1 1.4465 2.6527 0.7002 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0176 -1.2325 -0.3730 9 6 1.3446 -2.4454 0.5186 10 6 0.2629 -2.2297 1.5789 11 8 0.8530 -2.3378 2.9012 12 6 0.0543 -2.0769 3.9481 13 8 -1.1225 -1.8665 3.7725 14 6 0.6256 -2.0461 5.3423 15 7 1.2391 -3.3410 5.6473 16 6 2.3741 -3.8326 5.1167 17 7 2.5630 -5.0112 5.6584 18 7 1.5941 -5.2320 6.4784 19 7 0.7924 -4.2248 6.4744 20 6 1.6843 -0.9455 5.4355 21 6 2.2647 -0.9147 6.8508 22 6 1.1454 -0.6320 7.8550 23 6 0.0867 -1.7326 7.7618 24 6 -0.4940 -1.7631 6.3459 25 6 1.1498 -3.6017 -0.4643 26 6 2.2081 -3.7030 0.6360 27 1 -0.4851 0.8367 -0.0735 28 1 -0.5138 -2.9859 1.4647 29 1 -0.1740 -1.2388 1.4559 30 1 3.0070 -3.3496 4.3870 31 1 2.4819 -1.1472 4.7205 32 1 1.2279 0.0180 5.2085 33 1 3.0192 -0.1309 6.9172 34 1 2.7213 -1.8782 7.0774 35 1 0.6889 0.3315 7.6284 36 1 1.5587 -0.6105 8.8632 37 1 -0.7110 -1.5311 8.4768 38 1 0.5432 -2.6961 7.9882 39 1 -0.9505 -0.7996 6.1190 40 1 -1.2483 -2.5472 6.2795 41 1 0.2511 -4.2088 -0.3554 42 1 1.4987 -3.4572 -1.4868 43 1 3.2536 -3.6252 0.3374 44 1 2.0060 -4.3764 1.4688 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000845478097.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:50 Heat of formation + Delta-G solvation = 59.749173 kcal Electronic energy + Delta-G solvation = -28902.797979 eV Core-core repulsion = 25052.191445 eV Total energy + Delta-G solvation = -3850.606534 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -44.25881 -40.68347 -38.65919 -36.98980 -35.52061 -34.60710 -32.66911 -32.51828 -31.09540 -30.76915 -27.01246 -25.71551 -24.89291 -23.97971 -23.28476 -22.62847 -21.43504 -20.75311 -20.35389 -19.37561 -17.91392 -17.49065 -16.84483 -16.43518 -16.09492 -15.78522 -15.49440 -14.88177 -14.71299 -14.48677 -14.01872 -13.74498 -13.56990 -13.16276 -13.04359 -12.67012 -12.57750 -12.56434 -12.09057 -12.01015 -11.87694 -11.56270 -11.32383 -11.17455 -11.11033 -11.03235 -10.96537 -10.81498 -10.64250 -10.54415 -10.47722 -10.31975 -10.08443 -10.07522 -9.56406 -9.23116 -9.00564 -8.26843 -6.35784 -4.29759 1.21934 1.56039 2.31958 2.50325 2.82986 3.09843 3.20097 3.24331 3.78317 4.13076 4.15929 4.37657 4.45054 4.64823 4.65794 4.70460 4.83021 4.92647 4.99992 5.10435 5.22535 5.36821 5.41408 5.43180 5.55397 5.64290 5.72204 5.74875 5.77974 5.83205 5.89008 5.96282 6.05434 6.09702 6.23253 6.25515 6.44024 6.54848 6.55042 6.81274 7.01198 7.16383 7.28003 7.72206 7.96505 8.15865 8.61483 8.64949 9.23633 10.65718 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.013836 B = 0.005155 C = 0.004424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2023.150440 B = 5430.130766 C = 6327.579519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.871 5.871 2 C 0.069 3.931 3 Si 0.889 3.111 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.490 4.490 8 H 0.069 0.931 9 C 0.046 3.954 10 C 0.087 3.913 11 O -0.344 6.344 12 C 0.450 3.550 13 O -0.484 6.484 14 C 0.192 3.808 15 N -0.296 5.296 16 C 0.183 3.817 17 N -0.309 5.309 18 N -0.081 5.081 19 N -0.088 5.088 20 C -0.130 4.130 21 C -0.120 4.120 22 C -0.125 4.125 23 C -0.125 4.125 24 C -0.105 4.105 25 C -0.197 4.197 26 C -0.197 4.197 27 H 0.269 0.731 28 H 0.039 0.961 29 H 0.138 0.862 30 H 0.236 0.764 31 H 0.097 0.903 32 H 0.105 0.895 33 H 0.080 0.920 34 H 0.060 0.940 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.099 0.901 40 H 0.089 0.911 41 H 0.066 0.934 42 H 0.085 0.915 43 H 0.080 0.920 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.411 1.120 13.010 13.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.134 4.134 3 Si 0.716 3.284 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.526 4.526 8 H 0.087 0.913 9 C 0.046 3.954 10 C 0.015 3.985 11 O -0.259 6.259 12 C 0.288 3.712 13 O -0.370 6.370 14 C 0.107 3.893 15 N -0.100 5.100 16 C -0.115 4.115 17 N -0.157 5.157 18 N -0.075 5.075 19 N -0.074 5.074 20 C -0.168 4.168 21 C -0.157 4.157 22 C -0.162 4.162 23 C -0.163 4.163 24 C -0.143 4.143 25 C -0.235 4.235 26 C -0.234 4.234 27 H 0.079 0.921 28 H 0.058 0.942 29 H 0.155 0.845 30 H 0.252 0.748 31 H 0.115 0.885 32 H 0.123 0.877 33 H 0.099 0.901 34 H 0.079 0.921 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.095 0.905 38 H 0.096 0.904 39 H 0.117 0.883 40 H 0.108 0.892 41 H 0.084 0.916 42 H 0.103 0.897 43 H 0.099 0.901 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.552 0.218 13.790 13.879 hybrid contribution 0.377 1.553 -1.072 1.924 sum 1.929 1.771 12.718 12.985 Atomic orbital electron populations 1.69731 1.06334 1.27672 1.47090 1.25027 0.94668 0.99634 0.94067 0.86620 0.80393 0.82723 0.78703 1.20323 1.20791 1.19306 1.20503 0.99808 0.90421 1.41889 0.91294 1.18912 0.94663 0.88674 0.93162 1.23641 0.94678 1.06417 0.73720 1.86388 1.44224 1.77986 1.17342 1.22921 0.85652 0.75279 0.87319 1.90694 1.16652 1.43679 1.85936 1.21206 0.96659 0.79716 0.91735 1.48571 1.17884 1.15551 1.27967 1.27820 0.90128 0.92629 1.00916 1.75040 1.19292 1.12637 1.08714 1.78600 0.98546 1.15687 1.14713 1.78810 1.21877 0.95874 1.10855 1.22110 0.97631 0.97295 0.99800 1.21573 0.98452 1.02647 0.93061 1.21631 0.96111 0.99180 0.99285 1.21709 0.98978 1.00258 0.95323 1.21702 0.94943 1.04964 0.92654 1.23077 0.99167 1.05612 0.95686 1.22803 0.96167 1.03871 1.00579 0.92082 0.94228 0.84469 0.74780 0.88480 0.87699 0.90098 0.92109 0.91204 0.91339 0.90486 0.90402 0.88262 0.89203 0.91579 0.89695 0.90111 0.91146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -22.59 10.83 55.43 0.60 -21.99 16 2 C 0.07 1.72 4.98 -17.82 -0.09 1.63 16 3 Si 0.89 19.03 29.60 -169.99 -5.03 14.00 16 4 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 5 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 6 H -0.27 -5.63 7.11 56.52 0.40 -5.22 16 7 C -0.49 -12.24 9.02 -34.44 -0.31 -12.55 16 8 H 0.07 1.71 7.92 -52.49 -0.42 1.30 16 9 C 0.05 1.08 2.17 -155.66 -0.34 0.74 16 10 C 0.09 1.98 5.24 37.16 0.19 2.18 16 11 O -0.34 -6.73 9.38 -39.27 -0.37 -7.10 16 12 C 0.45 7.99 6.78 36.01 0.24 8.24 16 13 O -0.48 -9.82 15.73 -18.75 -0.29 -10.11 16 14 C 0.19 2.57 0.77 -132.97 -0.10 2.46 16 15 N -0.30 -4.15 2.26 -50.89 -0.11 -4.27 16 16 C 0.18 2.54 11.08 -90.38 -1.00 1.54 16 17 N -0.31 -4.91 12.36 29.59 0.37 -4.54 16 18 N -0.08 -1.35 13.43 60.35 0.81 -0.54 16 19 N -0.09 -1.35 10.38 60.35 0.63 -0.73 16 20 C -0.13 -1.41 4.43 -26.73 -0.12 -1.53 16 21 C -0.12 -1.07 5.77 -26.73 -0.15 -1.22 16 22 C -0.12 -1.03 5.92 -26.73 -0.16 -1.19 16 23 C -0.13 -1.22 5.71 -26.70 -0.15 -1.37 16 24 C -0.10 -1.24 3.71 -26.70 -0.10 -1.34 16 25 C -0.20 -4.25 9.88 -26.73 -0.26 -4.51 16 26 C -0.20 -4.00 9.71 -26.73 -0.26 -4.26 16 27 H 0.27 6.64 8.32 -40.82 -0.34 6.30 16 28 H 0.04 0.91 7.87 -51.93 -0.41 0.50 16 29 H 0.14 3.49 4.83 -51.93 -0.25 3.24 16 30 H 0.24 2.64 7.77 -52.49 -0.41 2.23 16 31 H 0.10 1.05 7.57 -51.93 -0.39 0.65 16 32 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.06 0.61 7.29 -51.92 -0.38 0.23 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.08 0.89 5.97 -51.93 -0.31 0.58 16 39 H 0.10 1.10 8.08 -51.93 -0.42 0.68 16 40 H 0.09 1.18 8.05 -51.93 -0.42 0.77 16 41 H 0.07 1.36 8.03 -51.93 -0.42 0.94 16 42 H 0.08 1.81 8.14 -51.93 -0.42 1.39 16 43 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 44 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 LS Contribution 357.29 15.07 5.38 5.38 Total: -1.00 -28.38 357.29 -6.97 -35.35 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: -6.34 Total: 5.74 kcal Atomic # 6 Polarization: -8.59 SS G_CDS: -2.61 Total: -11.20 kcal Atomic # 7 Polarization: -34.35 SS G_CDS: 2.29 Total: -32.06 kcal Atomic # 8 Polarization: -16.55 SS G_CDS: -0.66 Total: -17.21 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -5.03 Total: 14.00 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -28.38 -6.97 -35.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845478097.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.102 kcal (2) G-P(sol) polarization free energy of solvation -28.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.353 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds