Wall clock time and date at job start Tue Mar 31 2020 12:39:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86794 * 119.99480 * 2 1 4 4 H 1.48507 * 109.47249 * 270.00254 * 3 2 1 5 5 H 1.48498 * 109.47561 * 30.00693 * 3 2 1 6 6 H 1.48505 * 109.46718 * 150.00657 * 3 2 1 7 7 C 1.37870 * 120.00039 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00204 * 156.53509 * 7 2 1 9 9 C 1.50700 * 120.00203 * 336.53393 * 7 2 1 10 10 C 1.52997 * 115.55099 * 332.25795 * 9 7 2 11 11 O 1.45201 * 109.46878 * 266.37401 * 10 9 7 12 12 C 1.34234 * 116.99681 * 175.27195 * 11 10 9 13 13 O 1.20830 * 120.00174 * 5.53629 * 12 11 10 14 14 C 1.50703 * 119.99759 * 185.54298 * 12 11 10 15 15 N 1.46496 * 109.47047 * 301.38709 * 14 12 11 16 16 C 1.34600 * 126.43563 * 70.71609 * 15 14 12 17 17 N 1.31079 * 106.67650 * 180.02562 * 16 15 14 18 18 N 1.28837 * 107.98876 * 0.02562 * 17 16 15 19 19 N 1.28738 * 109.40304 * 359.97438 * 18 17 16 20 20 C 1.52998 * 109.47192 * 61.39125 * 14 12 11 21 21 C 1.53001 * 109.47263 * 180.02562 * 20 14 12 22 22 C 1.53005 * 109.46870 * 299.99917 * 21 20 14 23 23 C 1.52998 * 109.47109 * 59.99989 * 22 21 20 24 24 C 1.52998 * 109.46753 * 181.38658 * 14 12 11 25 25 C 1.53002 * 117.51798 * 117.95643 * 9 7 2 26 26 C 1.53000 * 60.00154 * 107.48376 * 25 9 7 27 27 H 0.96996 * 120.00624 * 5.01740 * 1 2 3 28 28 H 1.08997 * 109.47335 * 146.37439 * 10 9 7 29 29 H 1.08997 * 109.47088 * 26.37136 * 10 9 7 30 30 H 1.07996 * 126.66599 * 0.07527 * 16 15 14 31 31 H 1.09006 * 109.46734 * 299.99601 * 20 14 12 32 32 H 1.08997 * 109.47785 * 59.99613 * 20 14 12 33 33 H 1.08991 * 109.47516 * 179.97438 * 21 20 14 34 34 H 1.09007 * 109.46974 * 59.99607 * 21 20 14 35 35 H 1.08997 * 109.46575 * 299.99520 * 22 21 20 36 36 H 1.08992 * 109.46963 * 179.97438 * 22 21 20 37 37 H 1.09005 * 109.47209 * 180.02562 * 23 22 21 38 38 H 1.08997 * 109.47487 * 59.99813 * 23 22 21 39 39 H 1.08997 * 109.47563 * 299.99706 * 24 14 12 40 40 H 1.09007 * 109.47297 * 60.00115 * 24 14 12 41 41 H 1.08998 * 117.50104 * 214.97017 * 25 9 7 42 42 H 1.09006 * 117.49867 * 359.97438 * 25 9 7 43 43 H 1.09004 * 117.50168 * 252.51523 * 26 25 9 44 44 H 1.08998 * 117.52016 * 107.48203 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4964 2.0466 -1.4001 5 1 1.4465 2.6527 0.7002 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0176 -1.2325 -0.3730 9 6 1.3446 -2.4454 0.5186 10 6 0.2629 -2.2297 1.5789 11 8 0.8530 -2.3378 2.9012 12 6 0.0543 -2.0769 3.9481 13 8 -1.1225 -1.8665 3.7725 14 6 0.6256 -2.0461 5.3423 15 7 1.2391 -3.3410 5.6473 16 6 2.3741 -3.8326 5.1167 17 7 2.5630 -5.0112 5.6584 18 7 1.5941 -5.2320 6.4784 19 7 0.7924 -4.2248 6.4744 20 6 1.6843 -0.9455 5.4355 21 6 2.2647 -0.9147 6.8508 22 6 1.1454 -0.6320 7.8550 23 6 0.0867 -1.7326 7.7618 24 6 -0.4940 -1.7631 6.3459 25 6 1.1498 -3.6017 -0.4643 26 6 2.2081 -3.7030 0.6360 27 1 -0.4851 0.8367 -0.0735 28 1 -0.5138 -2.9859 1.4647 29 1 -0.1740 -1.2388 1.4559 30 1 3.0070 -3.3496 4.3870 31 1 2.4819 -1.1472 4.7205 32 1 1.2279 0.0180 5.2085 33 1 3.0192 -0.1309 6.9172 34 1 2.7213 -1.8782 7.0774 35 1 0.6889 0.3315 7.6284 36 1 1.5587 -0.6105 8.8632 37 1 -0.7110 -1.5311 8.4768 38 1 0.5432 -2.6961 7.9882 39 1 -0.9505 -0.7996 6.1190 40 1 -1.2483 -2.5472 6.2795 41 1 0.2511 -4.2088 -0.3554 42 1 1.4987 -3.4572 -1.4868 43 1 3.2536 -3.6252 0.3374 44 1 2.0060 -4.3764 1.4688 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000845478097.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:50 Heat of formation + Delta-G solvation = 46.532213 kcal Electronic energy + Delta-G solvation = -28903.371109 eV Core-core repulsion = 25052.191445 eV Total energy + Delta-G solvation = -3851.179665 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -45.43223 -42.05346 -39.84164 -38.60624 -37.13522 -35.64485 -34.38876 -33.80209 -31.97771 -31.81494 -28.67463 -27.53610 -26.00965 -25.09331 -24.49422 -23.57905 -23.06135 -21.95901 -21.36052 -21.15928 -19.25507 -18.74355 -18.39711 -17.82114 -17.41899 -17.20885 -16.73632 -16.56344 -15.79335 -15.56285 -15.35465 -15.14635 -14.62930 -14.35274 -14.13859 -14.01991 -13.78595 -13.69014 -13.47201 -13.43975 -13.13302 -12.88509 -12.84943 -12.68436 -12.31871 -12.29178 -12.24585 -12.16940 -11.96239 -11.82292 -11.63501 -11.58152 -11.39728 -11.30473 -11.13393 -10.99582 -10.76118 -10.09880 -8.22417 -6.22194 0.03415 0.33685 1.10931 1.17867 1.41068 1.45904 1.47493 1.57443 2.38673 2.73058 2.83946 3.14617 3.24779 3.34787 3.59301 3.68194 3.88212 3.94857 3.98020 4.09352 4.15522 4.22822 4.28621 4.32114 4.44031 4.49448 4.53254 4.60199 4.73189 4.79933 4.84231 4.87804 4.89202 4.98161 5.01711 5.08220 5.11705 5.20165 5.20418 5.36435 5.41829 5.45255 5.51986 5.83446 6.29448 6.42780 6.71612 7.33559 7.45561 8.78567 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.013836 B = 0.005155 C = 0.004424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2023.150440 B = 5430.130766 C = 6327.579519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.028 3.972 3 Si 0.948 3.052 4 H -0.278 1.278 5 H -0.281 1.281 6 H -0.258 1.258 7 C -0.506 4.506 8 H 0.066 0.934 9 C 0.017 3.983 10 C 0.097 3.903 11 O -0.342 6.342 12 C 0.446 3.554 13 O -0.513 6.513 14 C 0.200 3.800 15 N -0.294 5.294 16 C 0.190 3.810 17 N -0.326 5.326 18 N -0.101 5.101 19 N -0.089 5.089 20 C -0.131 4.131 21 C -0.113 4.113 22 C -0.122 4.122 23 C -0.119 4.119 24 C -0.105 4.105 25 C -0.201 4.201 26 C -0.170 4.170 27 H 0.268 0.732 28 H 0.026 0.974 29 H 0.114 0.886 30 H 0.260 0.740 31 H 0.099 0.901 32 H 0.113 0.887 33 H 0.103 0.897 34 H 0.050 0.950 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.093 0.907 38 H 0.061 0.939 39 H 0.107 0.893 40 H 0.070 0.930 41 H 0.070 0.930 42 H 0.083 0.917 43 H 0.092 0.908 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.947 2.255 14.262 14.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.172 4.172 3 Si 0.773 3.227 4 H -0.204 1.204 5 H -0.206 1.206 6 H -0.182 1.182 7 C -0.542 4.542 8 H 0.084 0.916 9 C 0.016 3.984 10 C 0.025 3.975 11 O -0.257 6.257 12 C 0.286 3.714 13 O -0.401 6.401 14 C 0.116 3.884 15 N -0.098 5.098 16 C -0.108 4.108 17 N -0.173 5.173 18 N -0.095 5.095 19 N -0.076 5.076 20 C -0.169 4.169 21 C -0.150 4.150 22 C -0.160 4.160 23 C -0.156 4.156 24 C -0.143 4.143 25 C -0.239 4.239 26 C -0.207 4.207 27 H 0.078 0.922 28 H 0.044 0.956 29 H 0.131 0.869 30 H 0.276 0.724 31 H 0.117 0.883 32 H 0.131 0.869 33 H 0.121 0.879 34 H 0.068 0.932 35 H 0.101 0.899 36 H 0.101 0.899 37 H 0.111 0.889 38 H 0.080 0.920 39 H 0.126 0.874 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.101 0.899 43 H 0.110 0.890 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 3.106 1.336 15.055 15.430 hybrid contribution -0.159 1.157 -1.488 1.891 sum 2.947 2.493 13.567 14.106 Atomic orbital electron populations 1.69856 1.07637 1.28191 1.48108 1.25699 0.95231 1.02504 0.93787 0.85702 0.79513 0.78969 0.78536 1.20432 1.20645 1.18164 1.20725 0.99755 0.91542 1.42195 0.91554 1.19003 0.96007 0.89196 0.94144 1.23205 0.94420 1.04447 0.75428 1.86386 1.44205 1.78340 1.16744 1.23848 0.85321 0.73860 0.88391 1.90679 1.17989 1.44838 1.86547 1.21353 0.98052 0.80235 0.88793 1.48618 1.17864 1.15570 1.27730 1.28268 0.89975 0.92065 1.00508 1.74999 1.19521 1.13659 1.09147 1.78591 0.99116 1.16277 1.15507 1.78797 1.21773 0.95850 1.11164 1.22247 0.96832 0.96332 1.01485 1.21568 0.98998 1.02901 0.91581 1.21656 0.95379 0.98989 0.99945 1.21684 0.99886 1.00176 0.93886 1.21779 0.94156 1.04661 0.93672 1.23091 1.00073 1.04970 0.95800 1.22789 0.96250 1.01698 0.99981 0.92226 0.95571 0.86879 0.72426 0.88262 0.86876 0.87874 0.93159 0.89851 0.89850 0.88852 0.92042 0.87438 0.91086 0.91106 0.89887 0.88958 0.90015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -47.27 10.83 21.45 0.23 -47.03 16 2 C 0.03 1.40 4.98 84.65 0.42 1.82 16 3 Si 0.95 38.51 29.60 68.60 2.03 40.54 16 4 H -0.28 -11.29 7.11 99.48 0.71 -10.58 16 5 H -0.28 -11.24 7.11 99.48 0.71 -10.54 16 6 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 7 C -0.51 -25.09 9.02 25.60 0.23 -24.86 16 8 H 0.07 3.24 7.92 -2.91 -0.02 3.22 16 9 C 0.02 0.78 2.17 -52.93 -0.11 0.67 16 10 C 0.10 4.50 5.24 71.98 0.38 4.88 16 11 O -0.34 -13.26 9.38 -51.46 -0.48 -13.74 16 12 C 0.45 15.76 6.78 71.24 0.48 16.25 16 13 O -0.51 -21.21 15.73 21.95 0.35 -20.86 16 14 C 0.20 5.13 0.77 2.86 0.00 5.14 16 15 N -0.29 -7.94 2.26 -314.92 -0.71 -8.66 16 16 C 0.19 4.98 11.08 180.27 2.00 6.98 16 17 N -0.33 -10.03 12.36 -60.29 -0.74 -10.78 16 18 N -0.10 -3.29 13.43 37.01 0.50 -2.80 16 19 N -0.09 -2.70 10.38 37.02 0.38 -2.31 16 20 C -0.13 -2.54 4.43 30.59 0.14 -2.40 16 21 C -0.11 -1.68 5.77 30.60 0.18 -1.50 16 22 C -0.12 -1.64 5.92 30.60 0.18 -1.46 16 23 C -0.12 -2.08 5.71 30.61 0.17 -1.91 16 24 C -0.10 -2.38 3.71 30.61 0.11 -2.27 16 25 C -0.20 -8.57 9.88 30.59 0.30 -8.26 16 26 C -0.17 -6.65 9.71 30.60 0.30 -6.35 16 27 H 0.27 13.42 8.32 -92.71 -0.77 12.65 16 28 H 0.03 1.24 7.87 -2.39 -0.02 1.22 16 29 H 0.11 5.89 4.83 -2.39 -0.01 5.88 16 30 H 0.26 5.24 7.77 -2.91 -0.02 5.22 16 31 H 0.10 1.90 7.57 -2.38 -0.02 1.88 16 32 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 33 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.05 0.87 7.29 -2.38 -0.02 0.86 16 35 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.09 1.34 8.14 -2.38 -0.02 1.32 16 38 H 0.06 1.31 5.97 -2.39 -0.01 1.30 16 39 H 0.11 2.25 8.08 -2.39 -0.02 2.23 16 40 H 0.07 1.87 8.05 -2.38 -0.02 1.85 16 41 H 0.07 2.90 8.03 -2.39 -0.02 2.88 16 42 H 0.08 3.51 8.14 -2.38 -0.02 3.49 16 43 H 0.09 3.39 8.14 -2.39 -0.02 3.37 16 44 H 0.08 3.00 8.14 -2.39 -0.02 2.98 16 Total: -1.00 -61.27 357.29 7.34 -53.93 By element: Atomic # 1 Polarization: 23.97 SS G_CDS: 1.01 Total: 24.98 kcal Atomic # 6 Polarization: -18.05 SS G_CDS: 4.78 Total: -13.27 kcal Atomic # 7 Polarization: -71.24 SS G_CDS: -0.34 Total: -71.58 kcal Atomic # 8 Polarization: -34.47 SS G_CDS: -0.14 Total: -34.61 kcal Atomic # 14 Polarization: 38.51 SS G_CDS: 2.03 Total: 40.54 kcal Total: -61.27 7.34 -53.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845478097.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.464 kcal (2) G-P(sol) polarization free energy of solvation -61.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.932 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds