Wall clock time and date at job start Tue Mar 31 2020 12:07:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34228 * 116.99694 * 2 1 4 4 O 1.20826 * 119.99931 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00151 * 180.02562 * 3 2 1 6 6 C 1.50698 * 109.47327 * 180.02562 * 5 3 2 7 7 C 1.38260 * 119.99559 * 264.99239 * 6 5 3 8 8 C 1.38212 * 119.99650 * 179.71963 * 7 6 5 9 9 C 1.38255 * 120.00300 * 0.28729 * 8 7 6 10 10 C 1.38216 * 119.99744 * 359.97134 * 9 8 7 11 11 C 1.38208 * 120.00333 * 85.19090 * 6 5 3 12 12 C 1.50698 * 120.00186 * 0.03695 * 11 6 5 13 13 N 1.46502 * 109.46972 * 80.16985 * 12 11 6 14 14 C 1.34781 * 119.99750 * 179.97438 * 13 12 11 15 15 O 1.21581 * 120.00566 * 0.02562 * 14 13 12 16 16 N 1.34779 * 119.99497 * 180.02562 * 14 13 12 17 17 C 1.46503 * 119.99597 * 179.97438 * 16 14 13 18 18 C 1.52998 * 109.46708 * 180.02562 * 17 16 14 19 19 C 1.50710 * 109.47167 * 180.02562 * 18 17 16 20 20 H 1.08002 * 119.99252 * 0.02562 * 19 18 17 21 21 C 1.37869 * 120.00121 * 179.97438 * 19 18 17 22 22 N 1.31509 * 120.00281 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99752 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47069 * 60.00418 * 23 21 19 25 25 H 1.48504 * 109.47136 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.47361 * 299.99711 * 23 21 19 27 27 H 1.09005 * 109.47281 * 60.00130 * 1 2 3 28 28 H 1.09004 * 109.47268 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47494 * 300.00150 * 1 2 3 30 30 H 1.09005 * 109.47523 * 59.99760 * 5 3 2 31 31 H 1.09000 * 109.46991 * 299.99800 * 5 3 2 32 32 H 1.08002 * 120.00476 * 0.02562 * 7 6 5 33 33 H 1.07999 * 119.99941 * 180.25946 * 8 7 6 34 34 H 1.08005 * 120.00230 * 179.97438 * 9 8 7 35 35 H 1.08002 * 119.99715 * 179.97438 * 10 9 8 36 36 H 1.09001 * 109.47640 * 200.17138 * 12 11 6 37 37 H 1.09000 * 109.47091 * 320.17597 * 12 11 6 38 38 H 0.96996 * 119.99986 * 0.02562 * 13 12 11 39 39 H 0.97001 * 119.99818 * 0.02562 * 16 14 13 40 40 H 1.08997 * 109.47499 * 300.00097 * 17 16 14 41 41 H 1.09000 * 109.46864 * 60.00704 * 17 16 14 42 42 H 1.08999 * 109.47442 * 300.00218 * 18 17 16 43 43 H 1.09001 * 109.47726 * 60.00044 * 18 17 16 44 44 H 0.96999 * 120.00607 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5662 1.2750 -0.0006 6 6 3.9934 2.7202 0.0002 7 6 4.2891 3.3542 -1.1924 8 6 4.6753 4.6812 -1.1922 9 6 4.7717 5.3730 0.0009 10 6 4.4813 4.7377 1.1935 11 6 4.0936 3.4106 1.1932 12 6 3.7765 2.7181 2.4936 13 7 4.9261 1.9112 2.9102 14 6 4.8707 1.1989 4.0530 15 8 3.8666 1.2254 4.7379 16 7 5.9286 0.4570 4.4365 17 6 5.8687 -0.3169 5.6790 18 6 7.1895 -1.0626 5.8795 19 6 7.1277 -1.8593 7.1573 20 1 6.2353 -1.8362 7.7652 21 6 8.2098 -2.6182 7.5495 22 7 9.2958 -2.6474 6.8084 23 14 8.1333 -3.6051 9.1338 24 1 7.0189 -4.5834 9.0542 25 1 9.4148 -4.3300 9.3277 26 1 7.9053 -2.6869 10.2784 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 3.9557 0.7811 -0.8908 31 1 3.9563 0.7808 0.8892 32 1 4.2135 2.8139 -2.1245 33 1 4.9022 5.1777 -2.1241 34 1 5.0740 6.4099 0.0010 35 1 4.5570 5.2780 2.1256 36 1 3.5592 3.4634 3.2587 37 1 2.9089 2.0720 2.3589 38 1 5.7274 1.8903 2.3640 39 1 6.7299 0.4362 3.8902 40 1 5.7012 0.3570 6.5191 41 1 5.0508 -1.0351 5.6205 42 1 7.3574 -1.7365 5.0394 43 1 8.0072 -0.3443 5.9380 44 1 10.0570 -3.1817 7.0842 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000847350193.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:59 Heat of formation + Delta-G solvation = -101.330361 kcal Electronic energy + Delta-G solvation = -26116.412282 eV Core-core repulsion = 22226.528064 eV Total energy + Delta-G solvation = -3889.884218 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.00086 -39.89663 -39.17926 -36.70258 -35.33854 -34.52712 -33.26855 -32.82708 -31.50849 -29.51155 -29.07589 -27.25811 -26.12542 -24.39138 -22.74979 -21.85680 -21.05285 -20.62104 -20.55322 -18.20171 -17.89166 -17.02293 -16.95717 -16.50032 -16.32929 -15.92108 -15.72745 -15.12722 -15.02881 -14.50798 -14.07248 -13.89721 -13.73309 -13.65461 -13.52321 -13.47089 -13.02350 -12.67829 -12.51905 -12.38985 -12.28860 -12.25564 -11.37976 -11.25815 -11.18051 -11.04228 -11.00335 -10.77376 -10.63906 -10.29761 -10.00048 -9.56943 -9.28787 -9.14096 -9.07637 -9.00729 -8.47250 -8.24244 -6.07907 -4.10548 0.88724 1.04978 1.95656 2.50558 3.03728 3.32487 3.36125 3.39795 3.58307 3.58514 4.17632 4.39909 4.41343 4.53743 4.65090 4.71146 4.73316 4.84676 4.86242 4.95130 5.06012 5.11923 5.26667 5.28774 5.29186 5.44105 5.49848 5.72157 5.74782 6.10895 6.12629 6.18710 6.29056 6.31142 6.41403 6.53123 6.65795 6.79174 7.00710 7.23255 7.48956 7.57985 7.64867 7.91228 8.27054 8.43475 8.93653 8.99772 9.54139 11.03737 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.014931 B = 0.002503 C = 0.002284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.892287 B =11185.493721 C =12257.652674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.358 6.358 3 C 0.463 3.537 4 O -0.498 6.498 5 C -0.082 4.082 6 C -0.060 4.060 7 C -0.106 4.106 8 C -0.113 4.113 9 C -0.116 4.116 10 C -0.097 4.097 11 C -0.086 4.086 12 C 0.180 3.820 13 N -0.751 5.751 14 C 0.698 3.302 15 O -0.596 6.596 16 N -0.737 5.737 17 C 0.140 3.860 18 C 0.013 3.987 19 C -0.521 4.521 20 H 0.059 0.941 21 C 0.059 3.941 22 N -0.895 5.895 23 Si 0.897 3.103 24 H -0.276 1.276 25 H -0.287 1.287 26 H -0.276 1.276 27 H 0.062 0.938 28 H 0.102 0.898 29 H 0.064 0.936 30 H 0.117 0.883 31 H 0.121 0.879 32 H 0.124 0.876 33 H 0.124 0.876 34 H 0.125 0.875 35 H 0.127 0.873 36 H 0.075 0.925 37 H 0.068 0.932 38 H 0.395 0.605 39 H 0.393 0.607 40 H 0.054 0.946 41 H 0.054 0.946 42 H 0.022 0.978 43 H 0.022 0.978 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.622 12.427 -20.769 26.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.275 6.275 3 C 0.306 3.694 4 O -0.385 6.385 5 C -0.119 4.119 6 C -0.061 4.061 7 C -0.124 4.124 8 C -0.131 4.131 9 C -0.134 4.134 10 C -0.116 4.116 11 C -0.086 4.086 12 C 0.056 3.944 13 N -0.409 5.409 14 C 0.398 3.602 15 O -0.475 6.475 16 N -0.391 5.391 17 C 0.017 3.983 18 C -0.024 4.024 19 C -0.560 4.560 20 H 0.077 0.923 21 C -0.143 4.143 22 N -0.534 5.534 23 Si 0.725 3.275 24 H -0.201 1.201 25 H -0.213 1.213 26 H -0.201 1.201 27 H 0.080 0.920 28 H 0.120 0.880 29 H 0.083 0.917 30 H 0.135 0.865 31 H 0.139 0.861 32 H 0.142 0.858 33 H 0.142 0.858 34 H 0.143 0.857 35 H 0.145 0.855 36 H 0.093 0.907 37 H 0.086 0.914 38 H 0.229 0.771 39 H 0.226 0.774 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.040 0.960 43 H 0.040 0.960 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.630 12.633 -20.083 26.422 hybrid contribution 0.592 -0.496 0.274 0.819 sum -11.037 12.137 -19.809 25.720 Atomic orbital electron populations 1.23288 0.76055 1.03859 1.02574 1.86514 1.23661 1.33245 1.84068 1.23549 0.91754 0.81525 0.72604 1.90696 1.67019 1.36204 1.44566 1.20401 0.88472 0.95754 1.07294 1.19123 0.99897 0.93740 0.93323 1.20987 0.99311 0.95094 0.97005 1.21144 0.99395 0.94309 0.98268 1.21188 0.99789 1.00036 0.92423 1.21103 0.98041 0.93831 0.98629 1.19744 1.00370 0.94541 0.93953 1.19919 0.88458 0.93907 0.92146 1.45201 1.18586 1.51752 1.25312 1.16067 0.84208 0.79020 0.80927 1.90899 1.31950 1.69259 1.55387 1.45536 1.16024 1.49953 1.27571 1.21598 1.01158 0.93086 0.82430 1.19318 0.90398 0.95031 0.97653 1.21021 1.00570 1.27662 1.06748 0.92276 1.24985 0.95316 0.96685 0.97268 1.69941 1.04413 1.40826 1.38200 0.86575 0.77246 0.80182 0.83542 1.20109 1.21268 1.20108 0.91963 0.87953 0.91679 0.86515 0.86129 0.85848 0.85798 0.85735 0.85463 0.90693 0.91429 0.77089 0.77358 0.92793 0.92756 0.95961 0.95983 0.92812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.30 10.55 101.05 1.07 1.36 16 2 O -0.36 -3.88 10.57 -39.25 -0.41 -4.29 16 3 C 0.46 5.25 7.18 36.00 0.26 5.51 16 4 O -0.50 -6.84 15.78 -18.75 -0.30 -7.14 16 5 C -0.08 -0.73 5.29 -29.04 -0.15 -0.88 16 6 C -0.06 -0.57 4.37 -104.63 -0.46 -1.03 16 7 C -0.11 -0.88 9.68 -39.58 -0.38 -1.26 16 8 C -0.11 -0.87 10.05 -39.58 -0.40 -1.26 16 9 C -0.12 -0.93 10.05 -39.58 -0.40 -1.33 16 10 C -0.10 -0.90 9.67 -39.58 -0.38 -1.28 16 11 C -0.09 -0.88 5.25 -104.63 -0.55 -1.43 16 12 C 0.18 2.21 4.95 -5.19 -0.03 2.19 16 13 N -0.75 -9.52 4.89 -66.41 -0.32 -9.85 16 14 C 0.70 12.15 8.57 -86.91 -0.74 11.40 16 15 O -0.60 -12.91 16.34 5.29 0.09 -12.83 16 16 N -0.74 -12.91 5.56 -65.22 -0.36 -13.27 16 17 C 0.14 3.01 5.61 -4.04 -0.02 2.99 16 18 C 0.01 0.33 5.09 -27.88 -0.14 0.19 16 19 C -0.52 -14.48 9.11 -34.44 -0.31 -14.79 16 20 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 21 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 22 N -0.89 -26.09 13.29 55.43 0.74 -25.36 16 23 Si 0.90 21.40 29.54 -169.99 -5.02 16.38 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 25 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 26 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 27 H 0.06 0.46 8.13 -51.93 -0.42 0.04 16 28 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.57 8.13 -51.93 -0.42 0.15 16 30 H 0.12 0.72 8.05 -51.93 -0.42 0.30 16 31 H 0.12 1.14 6.59 -51.93 -0.34 0.79 16 32 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 33 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 34 H 0.12 0.73 8.06 -52.48 -0.42 0.31 16 35 H 0.13 1.04 8.04 -52.49 -0.42 0.62 16 36 H 0.07 0.97 8.00 -51.93 -0.42 0.55 16 37 H 0.07 0.94 6.70 -51.93 -0.35 0.59 16 38 H 0.40 3.99 8.48 -40.82 -0.35 3.64 16 39 H 0.39 5.86 8.49 -40.82 -0.35 5.52 16 40 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 41 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 42 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 44 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 379.72 15.07 5.72 5.72 Total: -1.00 -34.96 379.72 -9.02 -43.98 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -6.41 Total: 4.73 kcal Atomic # 6 Polarization: 4.67 SS G_CDS: -2.74 Total: 1.93 kcal Atomic # 7 Polarization: -48.52 SS G_CDS: 0.05 Total: -48.47 kcal Atomic # 8 Polarization: -23.63 SS G_CDS: -0.62 Total: -24.26 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.96 -9.02 -43.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847350193.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.352 kcal (2) G-P(sol) polarization free energy of solvation -34.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds