Wall clock time and date at job start Tue Mar 31 2020 12:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34228 * 116.99694 * 2 1 4 4 O 1.20826 * 119.99931 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00151 * 180.02562 * 3 2 1 6 6 C 1.50698 * 109.47327 * 180.02562 * 5 3 2 7 7 C 1.38260 * 119.99559 * 264.99239 * 6 5 3 8 8 C 1.38212 * 119.99650 * 179.71963 * 7 6 5 9 9 C 1.38255 * 120.00300 * 0.28729 * 8 7 6 10 10 C 1.38216 * 119.99744 * 359.97134 * 9 8 7 11 11 C 1.38208 * 120.00333 * 85.19090 * 6 5 3 12 12 C 1.50698 * 120.00186 * 0.03695 * 11 6 5 13 13 N 1.46502 * 109.46972 * 80.16985 * 12 11 6 14 14 C 1.34781 * 119.99750 * 179.97438 * 13 12 11 15 15 O 1.21581 * 120.00566 * 0.02562 * 14 13 12 16 16 N 1.34779 * 119.99497 * 180.02562 * 14 13 12 17 17 C 1.46503 * 119.99597 * 179.97438 * 16 14 13 18 18 C 1.52998 * 109.46708 * 180.02562 * 17 16 14 19 19 C 1.50710 * 109.47167 * 180.02562 * 18 17 16 20 20 H 1.08002 * 119.99252 * 0.02562 * 19 18 17 21 21 C 1.37869 * 120.00121 * 179.97438 * 19 18 17 22 22 N 1.31509 * 120.00281 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99752 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47069 * 60.00418 * 23 21 19 25 25 H 1.48504 * 109.47136 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.47361 * 299.99711 * 23 21 19 27 27 H 1.09005 * 109.47281 * 60.00130 * 1 2 3 28 28 H 1.09004 * 109.47268 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47494 * 300.00150 * 1 2 3 30 30 H 1.09005 * 109.47523 * 59.99760 * 5 3 2 31 31 H 1.09000 * 109.46991 * 299.99800 * 5 3 2 32 32 H 1.08002 * 120.00476 * 0.02562 * 7 6 5 33 33 H 1.07999 * 119.99941 * 180.25946 * 8 7 6 34 34 H 1.08005 * 120.00230 * 179.97438 * 9 8 7 35 35 H 1.08002 * 119.99715 * 179.97438 * 10 9 8 36 36 H 1.09001 * 109.47640 * 200.17138 * 12 11 6 37 37 H 1.09000 * 109.47091 * 320.17597 * 12 11 6 38 38 H 0.96996 * 119.99986 * 0.02562 * 13 12 11 39 39 H 0.97001 * 119.99818 * 0.02562 * 16 14 13 40 40 H 1.08997 * 109.47499 * 300.00097 * 17 16 14 41 41 H 1.09000 * 109.46864 * 60.00704 * 17 16 14 42 42 H 1.08999 * 109.47442 * 300.00218 * 18 17 16 43 43 H 1.09001 * 109.47726 * 60.00044 * 18 17 16 44 44 H 0.96999 * 120.00607 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5662 1.2750 -0.0006 6 6 3.9934 2.7202 0.0002 7 6 4.2891 3.3542 -1.1924 8 6 4.6753 4.6812 -1.1922 9 6 4.7717 5.3730 0.0009 10 6 4.4813 4.7377 1.1935 11 6 4.0936 3.4106 1.1932 12 6 3.7765 2.7181 2.4936 13 7 4.9261 1.9112 2.9102 14 6 4.8707 1.1989 4.0530 15 8 3.8666 1.2254 4.7379 16 7 5.9286 0.4570 4.4365 17 6 5.8687 -0.3169 5.6790 18 6 7.1895 -1.0626 5.8795 19 6 7.1277 -1.8593 7.1573 20 1 6.2353 -1.8362 7.7652 21 6 8.2098 -2.6182 7.5495 22 7 9.2958 -2.6474 6.8084 23 14 8.1333 -3.6051 9.1338 24 1 7.0189 -4.5834 9.0542 25 1 9.4148 -4.3300 9.3277 26 1 7.9053 -2.6869 10.2784 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 3.9557 0.7811 -0.8908 31 1 3.9563 0.7808 0.8892 32 1 4.2135 2.8139 -2.1245 33 1 4.9022 5.1777 -2.1241 34 1 5.0740 6.4099 0.0010 35 1 4.5570 5.2780 2.1256 36 1 3.5592 3.4634 3.2587 37 1 2.9089 2.0720 2.3589 38 1 5.7274 1.8903 2.3640 39 1 6.7299 0.4362 3.8902 40 1 5.7012 0.3570 6.5191 41 1 5.0508 -1.0351 5.6205 42 1 7.3574 -1.7365 5.0394 43 1 8.0072 -0.3443 5.9380 44 1 10.0570 -3.1817 7.0842 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000847350193.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:58 Heat of formation + Delta-G solvation = -123.944363 kcal Electronic energy + Delta-G solvation = -26117.392899 eV Core-core repulsion = 22226.528064 eV Total energy + Delta-G solvation = -3890.864835 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.84221 -41.05058 -40.16686 -37.55877 -36.79171 -35.93924 -34.80704 -33.99946 -32.52662 -31.17306 -29.84072 -28.02006 -27.28659 -26.10206 -23.44083 -23.01695 -22.53492 -22.00227 -21.38430 -19.55152 -18.74578 -18.40981 -17.81947 -17.77712 -17.44432 -16.91165 -16.79519 -16.48719 -16.27974 -15.88359 -15.35186 -15.11809 -15.08035 -14.64187 -14.47672 -14.25372 -14.17043 -13.89243 -13.71256 -13.35751 -13.19865 -13.13534 -12.97663 -12.90430 -12.52262 -12.21088 -12.02620 -11.95053 -11.84182 -11.69064 -11.66172 -11.50567 -11.25221 -10.58610 -10.40236 -9.81422 -9.76129 -9.71327 -8.22107 -6.32201 0.19172 0.39723 1.10196 1.43242 1.45514 1.53257 1.78845 1.80450 2.14414 2.42863 2.84744 3.12754 3.42000 3.46275 3.65101 3.85208 3.94371 4.04106 4.25032 4.26577 4.30545 4.31519 4.46591 4.46701 4.54536 4.57106 4.64066 4.66604 4.73391 4.89023 4.99624 5.08522 5.31645 5.33518 5.37308 5.48930 5.52989 5.57071 5.59427 5.62287 5.80796 6.01798 6.04494 6.19353 6.65142 6.80769 7.11314 7.36971 7.57597 8.89581 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.014931 B = 0.002503 C = 0.002284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.892287 B =11185.493721 C =12257.652674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.367 6.367 3 C 0.461 3.539 4 O -0.528 6.528 5 C -0.079 4.079 6 C -0.069 4.069 7 C -0.111 4.111 8 C -0.112 4.112 9 C -0.119 4.119 10 C -0.108 4.108 11 C -0.101 4.101 12 C 0.187 3.813 13 N -0.726 5.726 14 C 0.699 3.301 15 O -0.640 6.640 16 N -0.730 5.730 17 C 0.160 3.840 18 C 0.025 3.975 19 C -0.548 4.548 20 H 0.058 0.942 21 C 0.008 3.992 22 N -0.926 5.926 23 Si 0.963 3.037 24 H -0.269 1.269 25 H -0.280 1.280 26 H -0.269 1.269 27 H 0.069 0.931 28 H 0.128 0.872 29 H 0.054 0.946 30 H 0.148 0.852 31 H 0.114 0.886 32 H 0.145 0.855 33 H 0.151 0.849 34 H 0.147 0.853 35 H 0.132 0.868 36 H 0.065 0.935 37 H 0.049 0.951 38 H 0.412 0.588 39 H 0.408 0.592 40 H 0.042 0.958 41 H 0.044 0.956 42 H 0.010 0.990 43 H 0.009 0.991 44 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.236 12.754 -22.113 27.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.284 6.284 3 C 0.305 3.695 4 O -0.417 6.417 5 C -0.116 4.116 6 C -0.070 4.070 7 C -0.129 4.129 8 C -0.130 4.130 9 C -0.137 4.137 10 C -0.127 4.127 11 C -0.101 4.101 12 C 0.063 3.937 13 N -0.383 5.383 14 C 0.399 3.601 15 O -0.521 6.521 16 N -0.385 5.385 17 C 0.036 3.964 18 C -0.012 4.012 19 C -0.586 4.586 20 H 0.076 0.924 21 C -0.190 4.190 22 N -0.565 5.565 23 Si 0.788 3.212 24 H -0.194 1.194 25 H -0.206 1.206 26 H -0.194 1.194 27 H 0.087 0.913 28 H 0.147 0.853 29 H 0.073 0.927 30 H 0.165 0.835 31 H 0.132 0.868 32 H 0.163 0.837 33 H 0.168 0.832 34 H 0.165 0.835 35 H 0.150 0.850 36 H 0.083 0.917 37 H 0.068 0.932 38 H 0.248 0.752 39 H 0.243 0.757 40 H 0.061 0.939 41 H 0.062 0.938 42 H 0.029 0.971 43 H 0.027 0.973 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -11.219 12.973 -21.483 27.489 hybrid contribution 0.439 -0.542 0.598 0.919 sum -10.780 12.431 -20.885 26.588 Atomic orbital electron populations 1.23523 0.74897 1.05600 1.02436 1.86511 1.24985 1.33116 1.83784 1.24033 0.92654 0.81184 0.71590 1.90674 1.67849 1.37077 1.46136 1.20486 0.86840 0.95953 1.08361 1.19241 1.00183 0.94011 0.93576 1.21300 0.98651 0.95622 0.97280 1.21530 0.98046 0.94137 0.99249 1.21491 0.99068 1.01123 0.91990 1.21262 0.98232 0.93507 0.99667 1.19599 1.02332 0.95140 0.93059 1.19839 0.87485 0.93163 0.93249 1.44972 1.19448 1.50243 1.23680 1.16139 0.83280 0.79051 0.81626 1.90872 1.33521 1.70681 1.57073 1.45196 1.16906 1.49702 1.26683 1.21081 0.98898 0.92642 0.83768 1.19116 0.91431 0.94413 0.96286 1.21446 1.00798 1.28406 1.07956 0.92354 1.25839 0.94880 0.97672 1.00648 1.70042 1.05040 1.41580 1.39887 0.85526 0.77565 0.78738 0.79387 1.19360 1.20566 1.19422 0.91264 0.85336 0.92697 0.83456 0.86840 0.83706 0.83178 0.83540 0.85038 0.91667 0.93221 0.75183 0.75650 0.93936 0.93789 0.97139 0.97281 0.92537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 10.55 113.37 1.20 1.66 16 2 O -0.37 -7.82 10.57 -51.39 -0.54 -8.36 16 3 C 0.46 10.32 7.18 71.23 0.51 10.83 16 4 O -0.53 -14.60 15.78 21.96 0.35 -14.26 16 5 C -0.08 -1.33 5.29 29.10 0.15 -1.18 16 6 C -0.07 -1.23 4.37 -19.87 -0.09 -1.32 16 7 C -0.11 -1.55 9.68 22.27 0.22 -1.34 16 8 C -0.11 -1.38 10.05 22.27 0.22 -1.16 16 9 C -0.12 -1.62 10.05 22.27 0.22 -1.39 16 10 C -0.11 -1.87 9.67 22.27 0.22 -1.66 16 11 C -0.10 -2.02 5.25 -19.87 -0.10 -2.12 16 12 C 0.19 4.65 4.95 85.63 0.42 5.08 16 13 N -0.73 -18.21 4.89 -482.29 -2.36 -20.57 16 14 C 0.70 24.45 8.57 179.05 1.53 25.98 16 15 O -0.64 -28.28 16.34 -3.97 -0.06 -28.34 16 16 N -0.73 -25.55 5.56 -478.53 -2.66 -28.22 16 17 C 0.16 6.99 5.61 86.38 0.48 7.48 16 18 C 0.03 1.26 5.09 29.85 0.15 1.41 16 19 C -0.55 -30.64 9.11 25.60 0.23 -30.40 16 20 H 0.06 3.19 7.74 -2.91 -0.02 3.17 16 21 C 0.01 0.47 5.46 84.65 0.46 0.94 16 22 N -0.93 -54.07 13.29 21.44 0.28 -53.78 16 23 Si 0.96 43.59 29.54 68.60 2.03 45.62 16 24 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 25 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 26 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 27 H 0.07 1.00 8.13 -2.38 -0.02 0.98 16 28 H 0.13 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.05 0.98 8.13 -2.39 -0.02 0.97 16 30 H 0.15 1.48 8.05 -2.38 -0.02 1.46 16 31 H 0.11 2.07 6.59 -2.39 -0.02 2.05 16 32 H 0.15 1.34 8.06 -2.91 -0.02 1.32 16 33 H 0.15 1.04 8.06 -2.91 -0.02 1.02 16 34 H 0.15 1.29 8.06 -2.91 -0.02 1.27 16 35 H 0.13 2.06 8.04 -2.91 -0.02 2.03 16 36 H 0.06 1.75 8.00 -2.39 -0.02 1.73 16 37 H 0.05 1.43 6.70 -2.39 -0.02 1.41 16 38 H 0.41 7.84 8.48 -92.71 -0.79 7.05 16 39 H 0.41 11.92 8.49 -92.71 -0.79 11.13 16 40 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 41 H 0.04 2.00 8.14 -2.39 -0.02 1.99 16 42 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 43 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 44 H 0.27 14.61 8.31 -92.71 -0.77 13.84 16 Total: -1.00 -75.61 379.72 2.32 -73.28 By element: Atomic # 1 Polarization: 22.36 SS G_CDS: -0.54 Total: 21.82 kcal Atomic # 6 Polarization: 6.97 SS G_CDS: 5.84 Total: 12.81 kcal Atomic # 7 Polarization: -97.83 SS G_CDS: -4.73 Total: -102.56 kcal Atomic # 8 Polarization: -50.70 SS G_CDS: -0.26 Total: -50.96 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Total: -75.61 2.32 -73.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847350193.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.660 kcal (2) G-P(sol) polarization free energy of solvation -75.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds