Wall clock time and date at job start Tue Mar 31 2020 12:08:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35005 * 116.99484 * 2 1 4 4 O 1.21711 * 120.00066 * 359.97438 * 3 2 1 5 5 C 1.41290 * 119.99847 * 179.97438 * 3 2 1 6 6 C 1.35755 * 120.00287 * 174.02756 * 5 3 2 7 7 C 1.41534 * 119.99625 * 350.82925 * 6 5 3 8 8 C 1.37999 * 126.10485 * 138.48948 * 7 6 5 9 9 C 1.40280 * 106.52702 * 179.97438 * 8 7 6 10 10 C 1.35185 * 107.20651 * 359.97438 * 9 8 7 11 11 C 1.50698 * 125.47747 * 179.97438 * 10 9 8 12 12 N 1.46904 * 109.46727 * 90.00196 * 11 10 9 13 13 C 1.46901 * 111.00056 * 189.99968 * 12 11 10 14 14 C 1.53238 * 109.34178 * 187.25917 * 13 12 11 15 15 N 1.47084 * 108.51710 * 306.16593 * 14 13 12 16 16 C 1.36937 * 120.88186 * 231.18999 * 15 14 13 17 17 H 1.08001 * 120.00261 * 30.52122 * 16 15 14 18 18 C 1.38811 * 119.99859 * 210.24745 * 16 15 14 19 19 N 1.31622 * 119.99856 * 15.95116 * 18 16 15 20 20 Si 1.86795 * 120.00222 * 195.94359 * 18 16 15 21 21 H 1.48506 * 109.46816 * 90.00130 * 20 18 16 22 22 H 1.48500 * 109.47652 * 210.00197 * 20 18 16 23 23 H 1.48498 * 109.46902 * 330.00392 * 20 18 16 24 24 C 1.47077 * 118.23388 * 51.46146 * 15 14 13 25 25 C 1.46895 * 111.00248 * 314.30222 * 12 11 10 26 26 O 1.34007 * 109.04299 * 0.24313 * 10 9 8 27 27 H 1.09004 * 109.46566 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46937 * 299.99724 * 1 2 3 29 29 H 1.08996 * 109.47209 * 60.00123 * 1 2 3 30 30 H 1.08002 * 119.99857 * 354.03084 * 5 3 2 31 31 H 1.07995 * 119.99993 * 170.83351 * 6 5 3 32 32 H 1.08005 * 126.73825 * 0.02562 * 8 7 6 33 33 H 1.07999 * 126.39979 * 180.02562 * 9 8 7 34 34 H 1.09001 * 109.47540 * 330.00872 * 11 10 9 35 35 H 1.08996 * 109.47769 * 210.00111 * 11 10 9 36 36 H 1.08998 * 109.49504 * 67.29295 * 13 12 11 37 37 H 1.09008 * 109.49408 * 307.21595 * 13 12 11 38 38 H 1.09000 * 109.63007 * 186.46165 * 14 13 12 39 39 H 1.08995 * 109.79122 * 65.97167 * 14 13 12 40 40 H 0.97002 * 120.00153 * 180.02562 * 19 18 16 41 41 H 1.08997 * 109.62944 * 68.25450 * 24 15 14 42 42 H 1.09005 * 109.62936 * 188.82791 * 24 15 14 43 43 H 1.09000 * 109.49273 * 292.70379 * 25 12 11 44 44 H 1.08999 * 109.49511 * 52.75924 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0418 1.2030 0.0000 4 8 1.3789 2.2237 -0.0005 5 6 3.4528 1.2770 0.0005 6 6 4.0695 2.4802 -0.1218 7 6 3.3140 3.6331 -0.4433 8 6 3.4660 4.8864 0.1139 9 6 2.5138 5.7140 -0.4996 10 6 1.8344 4.9527 -1.3864 11 6 0.7135 5.4320 -2.2723 12 7 1.2672 5.9150 -3.5444 13 6 0.2410 6.6054 -4.3370 14 6 0.8052 6.9321 -5.7237 15 7 2.0632 7.6749 -5.5530 16 6 2.2742 8.8596 -6.2065 17 1 1.4397 9.5055 -6.4366 18 6 3.5612 9.2332 -6.5682 19 7 4.5281 8.3401 -6.5757 20 14 3.9211 11.0032 -7.0443 21 1 4.3047 11.7732 -5.8338 22 1 5.0356 11.0353 -8.0252 23 1 2.7090 11.6084 -7.6524 24 6 3.0910 7.1082 -4.6666 25 6 2.4344 6.7775 -3.3169 26 8 2.3140 3.7020 -1.3468 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 4.0407 0.3763 0.0982 31 1 5.1364 2.5576 0.0262 32 1 4.1787 5.1739 0.8728 33 1 2.3540 6.7635 -0.3013 34 1 0.1803 6.2434 -1.7769 35 1 0.0252 4.6091 -2.4649 36 1 -0.0466 7.5289 -3.8344 37 1 -0.6320 5.9611 -4.4421 38 1 0.0909 7.5437 -6.2749 39 1 0.9963 6.0092 -6.2712 40 1 5.4276 8.6012 -6.8281 41 1 3.4981 6.2003 -5.1115 42 1 3.8887 7.8362 -4.5186 43 1 2.1163 7.6986 -2.8286 44 1 3.1521 6.2582 -2.6818 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000848885761.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:30 Heat of formation + Delta-G solvation = -1.800508 kcal Electronic energy + Delta-G solvation = -27284.603491 eV Core-core repulsion = 23399.035211 eV Total energy + Delta-G solvation = -3885.568280 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.46424 -40.56285 -38.10352 -36.92177 -34.74051 -34.19260 -32.80998 -31.53843 -29.92362 -29.70592 -28.28748 -26.84761 -25.04500 -23.62699 -22.57961 -22.18992 -21.67090 -20.69168 -19.63631 -19.05508 -18.17720 -17.12034 -16.76957 -16.52651 -16.09628 -15.55411 -15.01726 -14.65313 -14.53109 -14.28781 -14.10169 -13.71585 -13.49166 -13.36434 -13.29755 -13.05857 -13.01103 -12.71820 -12.49397 -12.09569 -12.00922 -11.50663 -11.44524 -11.06728 -10.86769 -10.75790 -10.62590 -10.47879 -10.32349 -10.25016 -10.06431 -9.83968 -9.63284 -9.49173 -8.49172 -8.03719 -7.72268 -6.60431 -5.76449 -3.21311 0.26411 1.98262 2.63156 2.78635 2.91841 3.20482 3.38408 3.45062 3.46484 4.44292 4.52229 4.58874 4.74794 4.93075 4.96114 5.01645 5.03563 5.13170 5.32543 5.38268 5.43730 5.46994 5.57562 5.61403 5.66702 5.89492 5.91778 5.95808 6.04901 6.14630 6.16845 6.25820 6.30996 6.34351 6.56443 6.60082 6.71577 6.95370 7.22993 7.30586 7.53040 7.65445 7.68890 7.70378 7.83178 8.47280 9.23145 9.85664 10.46772 11.32187 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.022754 B = 0.002905 C = 0.002754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.240911 B = 9637.623108 C =10166.002932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.358 6.358 3 C 0.487 3.513 4 O -0.489 6.489 5 C -0.209 4.209 6 C 0.043 3.957 7 C -0.026 4.026 8 C -0.156 4.156 9 C -0.220 4.220 10 C 0.047 3.953 11 C 0.125 3.875 12 N -0.528 5.528 13 C 0.045 3.955 14 C 0.149 3.851 15 N -0.595 5.595 16 C -0.255 4.255 17 H 0.064 0.936 18 C 0.004 3.996 19 N -0.901 5.901 20 Si 0.902 3.098 21 H -0.288 1.288 22 H -0.291 1.291 23 H -0.279 1.279 24 C 0.183 3.817 25 C 0.030 3.970 26 O -0.128 6.128 27 H 0.098 0.902 28 H 0.057 0.943 29 H 0.060 0.940 30 H 0.149 0.851 31 H 0.164 0.836 32 H 0.150 0.850 33 H 0.147 0.853 34 H 0.061 0.939 35 H 0.087 0.913 36 H 0.031 0.969 37 H 0.064 0.936 38 H 0.057 0.943 39 H 0.026 0.974 40 H 0.254 0.746 41 H 0.027 0.973 42 H 0.082 0.918 43 H 0.026 0.974 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.250 -14.324 16.284 22.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.275 6.275 3 C 0.334 3.666 4 O -0.378 6.378 5 C -0.228 4.228 6 C 0.025 3.975 7 C -0.076 4.076 8 C -0.175 4.175 9 C -0.240 4.240 10 C -0.006 4.006 11 C -0.002 4.002 12 N -0.254 5.254 13 C -0.084 4.084 14 C 0.022 3.978 15 N -0.318 5.318 16 C -0.385 4.385 17 H 0.082 0.918 18 C -0.195 4.195 19 N -0.545 5.545 20 Si 0.732 3.268 21 H -0.215 1.215 22 H -0.217 1.217 23 H -0.204 1.204 24 C 0.057 3.943 25 C -0.099 4.099 26 O -0.022 6.022 27 H 0.117 0.883 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.166 0.834 31 H 0.181 0.819 32 H 0.168 0.832 33 H 0.165 0.835 34 H 0.078 0.922 35 H 0.105 0.895 36 H 0.049 0.951 37 H 0.082 0.918 38 H 0.075 0.925 39 H 0.044 0.956 40 H 0.064 0.936 41 H 0.045 0.955 42 H 0.101 0.899 43 H 0.044 0.956 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.272 -14.657 15.756 21.939 hybrid contribution -0.096 1.677 0.408 1.729 sum -4.367 -12.980 16.164 21.185 Atomic orbital electron populations 1.22832 0.77170 1.03332 1.02410 1.86210 1.23172 1.33248 1.84834 1.19992 0.90397 0.81603 0.74562 1.90971 1.67116 1.35124 1.44608 1.21423 0.91664 0.99657 1.10060 1.20812 0.98980 0.88522 0.89229 1.19473 0.93638 0.95648 0.98862 1.22137 1.01694 0.91360 1.02355 1.21438 1.00424 1.00955 1.01160 1.22482 0.97769 0.82089 0.98301 1.20658 0.91372 0.99272 0.88928 1.62168 1.08215 1.40722 1.14299 1.22662 0.93221 0.95600 0.96944 1.20971 0.89542 0.95266 0.91984 1.44120 1.14083 1.22767 1.50854 1.19162 0.92934 0.94447 1.31920 0.91803 1.25124 0.97328 0.97845 0.99185 1.70034 1.01288 1.31777 1.51392 0.86292 0.77690 0.84897 0.77881 1.21470 1.21715 1.20428 1.20879 0.90952 0.97368 0.85149 1.23136 0.92057 0.93407 1.01324 1.84178 1.39377 1.29855 1.48760 0.88339 0.92400 0.92087 0.83351 0.81905 0.83189 0.83506 0.92153 0.89519 0.95111 0.91807 0.92457 0.95611 0.93611 0.95516 0.89936 0.95584 0.91499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.33 10.45 101.05 1.06 1.38 16 2 O -0.36 -4.02 10.46 -41.33 -0.43 -4.45 16 3 C 0.49 6.19 7.50 31.89 0.24 6.43 16 4 O -0.49 -7.65 12.25 -27.66 -0.34 -7.99 16 5 C -0.21 -2.05 9.99 -39.31 -0.39 -2.44 16 6 C 0.04 0.43 9.95 -39.22 -0.39 0.04 16 7 C -0.03 -0.36 5.26 -38.41 -0.20 -0.57 16 8 C -0.16 -2.06 10.90 -38.90 -0.42 -2.49 16 9 C -0.22 -3.25 9.05 -39.90 -0.36 -3.61 16 10 C 0.05 0.77 5.47 -35.40 -0.19 0.58 16 11 C 0.13 1.98 5.80 -4.97 -0.03 1.95 16 12 N -0.53 -9.93 4.77 -235.47 -1.12 -11.05 16 13 C 0.04 0.82 5.58 -3.70 -0.02 0.80 16 14 C 0.15 3.25 6.69 -3.60 -0.02 3.22 16 15 N -0.59 -15.42 3.01 -171.73 -0.52 -15.93 16 16 C -0.25 -7.12 9.60 -15.06 -0.14 -7.26 16 17 H 0.06 1.75 7.88 -52.49 -0.41 1.33 16 18 C 0.00 0.12 4.93 -17.43 -0.09 0.03 16 19 N -0.90 -26.58 11.34 55.49 0.63 -25.95 16 20 Si 0.90 21.87 29.58 -169.99 -5.03 16.84 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 22 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 24 C 0.18 4.56 5.41 -3.37 -0.02 4.54 16 25 C 0.03 0.61 4.95 -3.47 -0.02 0.59 16 26 O -0.13 -2.16 7.93 -20.00 -0.16 -2.32 16 27 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.06 0.50 8.13 -51.93 -0.42 0.08 16 29 H 0.06 0.58 8.13 -51.93 -0.42 0.16 16 30 H 0.15 0.96 8.06 -52.49 -0.42 0.53 16 31 H 0.16 0.94 8.06 -52.49 -0.42 0.52 16 32 H 0.15 1.51 8.06 -52.48 -0.42 1.08 16 33 H 0.15 1.99 8.06 -52.49 -0.42 1.57 16 34 H 0.06 0.87 8.08 -51.93 -0.42 0.45 16 35 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 36 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.06 0.99 8.11 -51.92 -0.42 0.57 16 38 H 0.06 1.19 7.95 -51.93 -0.41 0.77 16 39 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 41 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.08 2.25 6.35 -51.93 -0.33 1.92 16 43 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 44 H 0.07 1.32 5.56 -51.93 -0.29 1.03 16 LS Contribution 361.78 15.07 5.45 5.45 Total: -1.00 -33.99 361.78 -9.02 -43.01 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: -6.49 Total: -0.80 kcal Atomic # 6 Polarization: 4.20 SS G_CDS: -1.01 Total: 3.19 kcal Atomic # 7 Polarization: -51.92 SS G_CDS: -1.01 Total: -52.94 kcal Atomic # 8 Polarization: -13.83 SS G_CDS: -0.93 Total: -14.76 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.03 Total: 16.84 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.99 -9.02 -43.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848885761.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.212 kcal (2) G-P(sol) polarization free energy of solvation -33.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds