Wall clock time and date at job start Tue Mar 31 2020 12:08:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35005 * 116.99484 * 2 1 4 4 O 1.21711 * 120.00066 * 359.97438 * 3 2 1 5 5 C 1.41290 * 119.99847 * 179.97438 * 3 2 1 6 6 C 1.35755 * 120.00287 * 174.02756 * 5 3 2 7 7 C 1.41534 * 119.99625 * 350.82925 * 6 5 3 8 8 C 1.37999 * 126.10485 * 138.48948 * 7 6 5 9 9 C 1.40280 * 106.52702 * 179.97438 * 8 7 6 10 10 C 1.35185 * 107.20651 * 359.97438 * 9 8 7 11 11 C 1.50698 * 125.47747 * 179.97438 * 10 9 8 12 12 N 1.46904 * 109.46727 * 90.00196 * 11 10 9 13 13 C 1.46901 * 111.00056 * 189.99968 * 12 11 10 14 14 C 1.53238 * 109.34178 * 187.25917 * 13 12 11 15 15 N 1.47084 * 108.51710 * 306.16593 * 14 13 12 16 16 C 1.36937 * 120.88186 * 231.18999 * 15 14 13 17 17 H 1.08001 * 120.00261 * 30.52122 * 16 15 14 18 18 C 1.38811 * 119.99859 * 210.24745 * 16 15 14 19 19 N 1.31622 * 119.99856 * 15.95116 * 18 16 15 20 20 Si 1.86795 * 120.00222 * 195.94359 * 18 16 15 21 21 H 1.48506 * 109.46816 * 90.00130 * 20 18 16 22 22 H 1.48500 * 109.47652 * 210.00197 * 20 18 16 23 23 H 1.48498 * 109.46902 * 330.00392 * 20 18 16 24 24 C 1.47077 * 118.23388 * 51.46146 * 15 14 13 25 25 C 1.46895 * 111.00248 * 314.30222 * 12 11 10 26 26 O 1.34007 * 109.04299 * 0.24313 * 10 9 8 27 27 H 1.09004 * 109.46566 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46937 * 299.99724 * 1 2 3 29 29 H 1.08996 * 109.47209 * 60.00123 * 1 2 3 30 30 H 1.08002 * 119.99857 * 354.03084 * 5 3 2 31 31 H 1.07995 * 119.99993 * 170.83351 * 6 5 3 32 32 H 1.08005 * 126.73825 * 0.02562 * 8 7 6 33 33 H 1.07999 * 126.39979 * 180.02562 * 9 8 7 34 34 H 1.09001 * 109.47540 * 330.00872 * 11 10 9 35 35 H 1.08996 * 109.47769 * 210.00111 * 11 10 9 36 36 H 1.08998 * 109.49504 * 67.29295 * 13 12 11 37 37 H 1.09008 * 109.49408 * 307.21595 * 13 12 11 38 38 H 1.09000 * 109.63007 * 186.46165 * 14 13 12 39 39 H 1.08995 * 109.79122 * 65.97167 * 14 13 12 40 40 H 0.97002 * 120.00153 * 180.02562 * 19 18 16 41 41 H 1.08997 * 109.62944 * 68.25450 * 24 15 14 42 42 H 1.09005 * 109.62936 * 188.82791 * 24 15 14 43 43 H 1.09000 * 109.49273 * 292.70379 * 25 12 11 44 44 H 1.08999 * 109.49511 * 52.75924 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0418 1.2030 0.0000 4 8 1.3789 2.2237 -0.0005 5 6 3.4528 1.2770 0.0005 6 6 4.0695 2.4802 -0.1218 7 6 3.3140 3.6331 -0.4433 8 6 3.4660 4.8864 0.1139 9 6 2.5138 5.7140 -0.4996 10 6 1.8344 4.9527 -1.3864 11 6 0.7135 5.4320 -2.2723 12 7 1.2672 5.9150 -3.5444 13 6 0.2410 6.6054 -4.3370 14 6 0.8052 6.9321 -5.7237 15 7 2.0632 7.6749 -5.5530 16 6 2.2742 8.8596 -6.2065 17 1 1.4397 9.5055 -6.4366 18 6 3.5612 9.2332 -6.5682 19 7 4.5281 8.3401 -6.5757 20 14 3.9211 11.0032 -7.0443 21 1 4.3047 11.7732 -5.8338 22 1 5.0356 11.0353 -8.0252 23 1 2.7090 11.6084 -7.6524 24 6 3.0910 7.1082 -4.6666 25 6 2.4344 6.7775 -3.3169 26 8 2.3140 3.7020 -1.3468 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 4.0407 0.3763 0.0982 31 1 5.1364 2.5576 0.0262 32 1 4.1787 5.1739 0.8728 33 1 2.3540 6.7635 -0.3013 34 1 0.1803 6.2434 -1.7769 35 1 0.0252 4.6091 -2.4649 36 1 -0.0466 7.5289 -3.8344 37 1 -0.6320 5.9611 -4.4421 38 1 0.0909 7.5437 -6.2749 39 1 0.9963 6.0092 -6.2712 40 1 5.4276 8.6012 -6.8281 41 1 3.4981 6.2003 -5.1115 42 1 3.8887 7.8362 -4.5186 43 1 2.1163 7.6986 -2.8286 44 1 3.1521 6.2582 -2.6818 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000848885761.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:29 Heat of formation + Delta-G solvation = -23.142844 kcal Electronic energy + Delta-G solvation = -27285.528964 eV Core-core repulsion = 23399.035211 eV Total energy + Delta-G solvation = -3886.493753 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.53541 -41.48383 -39.71296 -37.83649 -36.42730 -35.19226 -34.02889 -33.29869 -31.66757 -31.03059 -29.33204 -28.15675 -26.51963 -24.93565 -24.30292 -23.65357 -22.75231 -21.76590 -20.83371 -20.59198 -19.09171 -18.75103 -18.02013 -17.48635 -17.34327 -16.80964 -16.72342 -16.03929 -15.77572 -15.55590 -15.34440 -15.19469 -14.92684 -14.89894 -14.67731 -14.36149 -14.13360 -13.77736 -13.53351 -13.40988 -13.14329 -13.01740 -12.88952 -12.78988 -12.64414 -12.31427 -12.09015 -11.93467 -11.72845 -11.70683 -11.56420 -11.47869 -11.12731 -10.65621 -10.60933 -9.40027 -8.90278 -8.66694 -7.89000 -5.38247 -0.58719 0.92078 1.46223 1.47259 1.56737 1.59788 1.92669 2.03751 2.26442 2.49577 3.01732 3.26672 3.63131 3.66255 3.84943 4.01430 4.08843 4.17583 4.26612 4.30227 4.31729 4.32220 4.39814 4.47222 4.58084 4.61750 4.66666 4.67147 4.75589 4.79464 4.87415 4.97761 4.98461 5.08030 5.14978 5.23614 5.31002 5.43563 5.59497 5.60406 5.61355 6.05857 6.11979 6.24510 6.37027 6.78266 7.11308 7.80314 8.37793 9.17921 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.022754 B = 0.002905 C = 0.002754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.240911 B = 9637.623108 C =10166.002932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.359 6.359 3 C 0.477 3.523 4 O -0.525 6.525 5 C -0.205 4.205 6 C 0.038 3.962 7 C -0.032 4.032 8 C -0.166 4.166 9 C -0.222 4.222 10 C 0.011 3.989 11 C 0.133 3.867 12 N -0.542 5.542 13 C 0.055 3.945 14 C 0.144 3.856 15 N -0.613 5.613 16 C -0.268 4.268 17 H 0.068 0.932 18 C -0.049 4.049 19 N -0.936 5.936 20 Si 0.971 3.029 21 H -0.284 1.284 22 H -0.294 1.294 23 H -0.267 1.267 24 C 0.192 3.808 25 C 0.054 3.946 26 O -0.153 6.153 27 H 0.132 0.868 28 H 0.056 0.944 29 H 0.049 0.951 30 H 0.187 0.813 31 H 0.209 0.791 32 H 0.181 0.819 33 H 0.155 0.845 34 H 0.077 0.923 35 H 0.094 0.906 36 H 0.034 0.966 37 H 0.098 0.902 38 H 0.066 0.934 39 H 0.013 0.987 40 H 0.251 0.749 41 H -0.007 1.007 42 H 0.052 0.948 43 H 0.025 0.975 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.452 -14.917 17.792 23.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.276 6.276 3 C 0.326 3.674 4 O -0.417 6.417 5 C -0.223 4.223 6 C 0.020 3.980 7 C -0.082 4.082 8 C -0.185 4.185 9 C -0.242 4.242 10 C -0.042 4.042 11 C 0.006 3.994 12 N -0.268 5.268 13 C -0.073 4.073 14 C 0.018 3.982 15 N -0.337 5.337 16 C -0.398 4.398 17 H 0.086 0.914 18 C -0.245 4.245 19 N -0.581 5.581 20 Si 0.799 3.201 21 H -0.211 1.211 22 H -0.221 1.221 23 H -0.192 1.192 24 C 0.066 3.934 25 C -0.075 4.075 26 O -0.048 6.048 27 H 0.150 0.850 28 H 0.075 0.925 29 H 0.068 0.932 30 H 0.204 0.796 31 H 0.226 0.774 32 H 0.198 0.802 33 H 0.172 0.828 34 H 0.095 0.905 35 H 0.112 0.888 36 H 0.052 0.948 37 H 0.116 0.884 38 H 0.084 0.916 39 H 0.031 0.969 40 H 0.060 0.940 41 H 0.011 0.989 42 H 0.070 0.930 43 H 0.043 0.957 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -4.514 -15.273 17.277 23.497 hybrid contribution -0.082 1.701 -0.036 1.703 sum -4.596 -13.572 17.240 22.417 Atomic orbital electron populations 1.23052 0.76094 1.05329 1.01780 1.86214 1.24343 1.32614 1.84403 1.20665 0.91638 0.81432 0.73705 1.90962 1.68105 1.36247 1.46411 1.21809 0.90433 1.01094 1.08984 1.21407 1.00723 0.87113 0.88729 1.20306 0.92726 0.97365 0.97824 1.22518 1.02067 0.90948 1.02993 1.21688 1.00361 1.01401 1.00768 1.22560 0.99185 0.82536 0.99872 1.20610 0.91541 0.99780 0.87482 1.62048 1.08150 1.40140 1.16492 1.22522 0.93724 0.96580 0.94506 1.21130 0.88211 0.94334 0.94477 1.44401 1.15312 1.22908 1.51123 1.19518 0.93260 0.95409 1.31580 0.91417 1.25935 0.97159 1.01779 0.99645 1.70199 1.01434 1.33725 1.52734 0.85219 0.77528 0.79990 0.77400 1.21055 1.22052 1.19161 1.20598 0.90716 0.94795 0.87274 1.22703 0.92897 0.93773 0.98145 1.84146 1.40458 1.30220 1.49943 0.85032 0.92536 0.93245 0.79625 0.77443 0.80186 0.82754 0.90523 0.88791 0.94786 0.88394 0.91566 0.96940 0.94013 0.98921 0.92962 0.95660 0.90883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 10.45 113.37 1.18 1.71 16 2 O -0.36 -7.59 10.46 -59.24 -0.62 -8.21 16 3 C 0.48 11.58 7.50 68.57 0.51 12.09 16 4 O -0.53 -16.34 12.25 27.02 0.33 -16.01 16 5 C -0.20 -3.50 9.99 22.44 0.22 -3.27 16 6 C 0.04 0.66 9.95 22.51 0.22 0.88 16 7 C -0.03 -0.86 5.26 23.03 0.12 -0.74 16 8 C -0.17 -4.14 10.90 22.71 0.25 -3.90 16 9 C -0.22 -6.40 9.05 22.06 0.20 -6.20 16 10 C 0.01 0.36 5.47 24.98 0.14 0.50 16 11 C 0.13 4.07 5.80 85.56 0.50 4.57 16 12 N -0.54 -20.12 4.77 -898.88 -4.29 -24.41 16 13 C 0.06 1.95 5.58 86.38 0.48 2.43 16 14 C 0.14 6.28 6.69 86.35 0.58 6.86 16 15 N -0.61 -32.41 3.01 -697.24 -2.10 -34.51 16 16 C -0.27 -15.12 9.60 84.03 0.81 -14.31 16 17 H 0.07 3.70 7.88 -2.91 -0.02 3.67 16 18 C -0.05 -2.83 4.93 84.86 0.42 -2.41 16 19 N -0.94 -56.88 11.34 21.65 0.25 -56.63 16 20 Si 0.97 45.44 29.58 68.60 2.03 47.47 16 21 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 22 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 23 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 24 C 0.19 9.96 5.41 86.50 0.47 10.43 16 25 C 0.05 2.23 4.95 86.54 0.43 2.66 16 26 O -0.15 -5.13 7.93 17.54 0.14 -4.99 16 27 H 0.13 1.25 8.14 -2.38 -0.02 1.23 16 28 H 0.06 0.95 8.13 -2.39 -0.02 0.93 16 29 H 0.05 0.93 8.13 -2.39 -0.02 0.91 16 30 H 0.19 1.67 8.06 -2.91 -0.02 1.65 16 31 H 0.21 1.54 8.06 -2.91 -0.02 1.52 16 32 H 0.18 3.16 8.06 -2.91 -0.02 3.13 16 33 H 0.15 4.04 8.06 -2.91 -0.02 4.02 16 34 H 0.08 2.09 8.08 -2.39 -0.02 2.07 16 35 H 0.09 2.72 8.14 -2.39 -0.02 2.70 16 36 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.10 2.80 8.11 -2.38 -0.02 2.78 16 38 H 0.07 2.71 7.95 -2.39 -0.02 2.69 16 39 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 40 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 41 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 42 H 0.05 2.98 6.35 -2.38 -0.02 2.97 16 43 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 44 H 0.07 2.92 5.56 -2.39 -0.01 2.90 16 Total: -1.00 -76.42 361.78 3.26 -73.16 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: 0.99 Total: 12.85 kcal Atomic # 6 Polarization: 4.76 SS G_CDS: 6.53 Total: 11.29 kcal Atomic # 7 Polarization: -109.41 SS G_CDS: -6.14 Total: -115.55 kcal Atomic # 8 Polarization: -29.07 SS G_CDS: -0.15 Total: -29.22 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Total: -76.42 3.26 -73.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848885761.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.018 kcal (2) G-P(sol) polarization free energy of solvation -76.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds