Wall clock time and date at job start Tue Mar 31 2020 12:24:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31277 * 1 3 3 Si 1.86804 * 119.99862 * 2 1 4 4 H 1.48494 * 109.47479 * 269.99934 * 3 2 1 5 5 H 1.48497 * 109.47170 * 30.00290 * 3 2 1 6 6 H 1.48508 * 109.46898 * 150.00077 * 3 2 1 7 7 C 1.39005 * 120.00165 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00323 * 180.02562 * 7 2 1 9 9 N 1.37298 * 119.99629 * 0.02562 * 7 2 1 10 10 C 1.36446 * 126.05200 * 179.97438 * 9 7 2 11 11 C 1.35780 * 107.49559 * 179.97438 * 10 9 7 12 12 N 1.40299 * 126.10027 * 179.97438 * 11 10 9 13 13 C 1.34773 * 120.00287 * 179.97438 * 12 11 10 14 14 O 1.21413 * 120.00008 * 0.02562 * 13 12 11 15 15 C 1.49310 * 120.00416 * 179.72624 * 13 12 11 16 16 O 1.21363 * 119.99484 * 0.28183 * 15 13 12 17 17 N 1.34769 * 120.00238 * 180.27495 * 15 13 12 18 18 C 1.46507 * 120.00057 * 180.02562 * 17 15 13 19 19 C 1.52996 * 109.47159 * 180.02562 * 18 17 15 20 20 C 1.53000 * 109.47271 * 180.02562 * 19 18 17 21 21 C 1.52996 * 109.47271 * 180.02562 * 20 19 18 22 22 C 1.53774 * 113.61262 * 274.13197 * 21 20 19 23 23 C 1.53952 * 87.01959 * 220.04942 * 22 21 20 24 24 C 1.53770 * 87.11141 * 25.36482 * 23 22 21 25 25 C 1.40723 * 107.80390 * 0.26654 * 11 10 9 26 26 N 1.30879 * 108.37347 * 359.54991 * 25 11 10 27 27 H 0.97001 * 120.00185 * 359.97438 * 1 2 3 28 28 H 1.07995 * 126.25144 * 0.02562 * 10 9 7 29 29 H 0.97001 * 119.99599 * 0.02562 * 12 11 10 30 30 H 0.97000 * 120.00347 * 0.02562 * 17 15 13 31 31 H 1.08994 * 109.46849 * 300.00316 * 18 17 15 32 32 H 1.08998 * 109.46926 * 60.00124 * 18 17 15 33 33 H 1.09000 * 109.47439 * 300.00100 * 19 18 17 34 34 H 1.08998 * 109.47408 * 60.00042 * 19 18 17 35 35 H 1.09008 * 109.46645 * 299.99994 * 20 19 18 36 36 H 1.08998 * 109.47049 * 59.99604 * 20 19 18 37 37 H 1.08999 * 112.85261 * 45.33212 * 21 20 19 38 38 H 1.09002 * 113.61838 * 334.57029 * 22 21 20 39 39 H 1.08999 * 113.61490 * 105.47487 * 22 21 20 40 40 H 1.09006 * 113.53970 * 270.80681 * 23 22 21 41 41 H 1.09002 * 113.66493 * 139.93796 * 23 22 21 42 42 H 1.09006 * 113.61522 * 220.08707 * 24 23 22 43 43 H 1.08999 * 113.69178 * 89.19896 * 24 23 22 44 44 H 1.08003 * 125.81497 * 179.74168 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3128 0.0000 0.0000 3 14 2.2468 1.6178 0.0000 4 1 2.4943 2.0465 -1.4000 5 1 1.4442 2.6527 0.7001 6 1 3.5444 1.4402 0.7001 7 6 2.0078 -1.2038 0.0005 8 1 3.0878 -1.2038 0.0010 9 7 1.3213 -2.3928 0.0005 10 6 1.8751 -3.6398 0.0005 11 6 0.8572 -4.5385 0.0011 12 7 0.9878 -5.9354 0.0008 13 6 -0.1115 -6.7150 0.0020 14 8 -1.2149 -6.2085 0.0028 15 6 0.0275 -8.2016 -0.0045 16 8 1.1304 -8.7079 -0.0057 17 7 -1.0719 -8.9812 -0.0089 18 6 -0.9355 -10.4399 -0.0148 19 6 -2.3242 -11.0819 -0.0196 20 6 -2.1818 -12.6053 -0.0250 21 6 -3.5705 -13.2473 -0.0305 22 6 -4.1753 -13.4189 1.3729 23 6 -4.6935 -14.7875 0.8945 24 6 -3.5393 -14.7821 -0.1215 25 6 -0.3521 -3.8189 -0.0048 26 7 -0.0715 -2.5406 0.0011 27 1 -0.4850 0.8400 0.0004 28 1 2.9302 -3.8700 0.0009 29 1 1.8694 -6.3400 0.0005 30 1 -1.9534 -8.5766 -0.0083 31 1 -0.3891 -10.7501 -0.9053 32 1 -0.3911 -10.7574 0.8745 33 1 -2.8711 -10.7717 0.8708 34 1 -2.8683 -10.7644 -0.9091 35 1 -1.6348 -12.9158 -0.9153 36 1 -1.6379 -12.9225 0.8647 37 1 -4.2495 -12.7813 -0.7446 38 1 -3.4292 -13.4870 2.1646 39 1 -4.9679 -12.7051 1.5971 40 1 -5.6806 -14.7426 0.4344 41 1 -4.6107 -15.5734 1.6453 42 1 -3.8190 -15.1672 -1.1022 43 1 -2.6183 -15.2235 0.2594 44 1 -1.3430 -4.2484 -0.0098 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000850655670.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:44 Heat of formation + Delta-G solvation = 19.016150 kcal Electronic energy + Delta-G solvation = -25150.031618 eV Core-core repulsion = 21297.658767 eV Total energy + Delta-G solvation = -3852.372851 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.48263 -39.55965 -39.30097 -37.94599 -35.95425 -34.36671 -33.23373 -32.70008 -30.32728 -28.38333 -27.79913 -26.01387 -25.41389 -24.28739 -22.82415 -21.71842 -21.03018 -20.19820 -19.76350 -19.46065 -18.12636 -17.43559 -16.46528 -16.23225 -15.85409 -15.57818 -15.41509 -15.15946 -15.08400 -14.70103 -14.04984 -13.97028 -13.53575 -13.36179 -13.15756 -12.98465 -12.89732 -12.83454 -12.39706 -11.91061 -11.74575 -11.69728 -11.56336 -11.29320 -11.23452 -11.18726 -10.93289 -10.87077 -10.55769 -10.51947 -10.43260 -10.29226 -9.29044 -9.22957 -9.12553 -8.87812 -8.13119 -6.78176 -6.60646 -4.28012 1.66278 2.60787 2.93255 3.03775 3.08643 3.33216 3.71816 3.75347 3.96283 4.17626 4.25056 4.28873 4.36993 4.46380 4.59137 4.66876 4.70795 4.93804 4.97999 5.02624 5.18887 5.24840 5.32136 5.35288 5.39424 5.42013 5.51874 5.57377 5.62132 5.78397 5.88069 5.95479 6.13474 6.19056 6.20502 6.35895 6.75543 6.88616 6.91785 7.16065 7.22380 7.76325 7.85985 8.10441 8.18293 8.48693 8.69396 9.31007 9.59641 10.35167 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.046644 B = 0.001708 C = 0.001660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.147993 B =16390.601393 C =16862.360264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.046 3.954 3 Si 0.936 3.064 4 H -0.270 1.270 5 H -0.275 1.275 6 H -0.263 1.263 7 C -0.322 4.322 8 H 0.118 0.882 9 N -0.138 5.138 10 C -0.077 4.077 11 C -0.070 4.070 12 N -0.583 5.583 13 C 0.483 3.517 14 O -0.524 6.524 15 C 0.514 3.486 16 O -0.529 6.529 17 N -0.705 5.705 18 C 0.117 3.883 19 C -0.132 4.132 20 C -0.106 4.106 21 C -0.111 4.111 22 C -0.139 4.139 23 C -0.145 4.145 24 C -0.139 4.139 25 C -0.026 4.026 26 N -0.261 5.261 27 H 0.276 0.724 28 H 0.149 0.851 29 H 0.409 0.591 30 H 0.414 0.586 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.090 0.910 38 H 0.081 0.919 39 H 0.066 0.934 40 H 0.078 0.922 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.080 0.920 44 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.877 -23.469 0.431 23.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.171 4.171 3 Si 0.760 3.240 4 H -0.195 1.195 5 H -0.200 1.200 6 H -0.187 1.187 7 C -0.455 4.455 8 H 0.136 0.864 9 N 0.095 4.905 10 C -0.229 4.229 11 C -0.176 4.176 12 N -0.226 5.226 13 C 0.264 3.736 14 O -0.401 6.401 15 C 0.296 3.704 16 O -0.406 6.406 17 N -0.359 5.359 18 C -0.006 4.006 19 C -0.170 4.170 20 C -0.144 4.144 21 C -0.129 4.129 22 C -0.176 4.176 23 C -0.182 4.182 24 C -0.176 4.176 25 C -0.202 4.202 26 N -0.091 5.091 27 H 0.086 0.914 28 H 0.167 0.833 29 H 0.244 0.756 30 H 0.250 0.750 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.108 0.892 38 H 0.099 0.901 39 H 0.085 0.915 40 H 0.097 0.903 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.099 0.901 44 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -5.541 -22.133 0.439 22.820 hybrid contribution 0.833 -0.225 -0.010 0.863 sum -4.708 -22.358 0.429 22.852 Atomic orbital electron populations 1.70204 1.06179 1.28143 1.34861 1.25664 0.95726 1.00352 0.95366 0.85804 0.79416 0.79784 0.79028 1.19528 1.20035 1.18735 1.19931 0.91781 0.80480 1.53267 0.86423 1.44565 1.04090 1.03359 1.38486 1.21306 0.96981 0.85204 1.19377 1.17264 0.94646 0.80645 1.25038 1.42149 1.08635 1.04589 1.67216 1.19663 0.85303 0.86913 0.81721 1.90655 1.25434 1.74317 1.49723 1.20289 0.84721 0.88308 0.77130 1.90730 1.25616 1.75772 1.48444 1.45735 1.09719 1.06766 1.73704 1.21468 0.97820 0.78581 1.02715 1.21807 0.96110 0.95762 1.03291 1.21481 0.96608 0.93772 1.02540 1.22560 0.96880 0.95581 0.97880 1.23024 1.00531 0.97280 0.96807 1.22842 0.98434 0.97841 0.99106 1.22943 0.98990 0.96130 0.99559 1.24146 0.97941 0.90753 1.07374 1.78261 0.90099 1.14977 1.25801 0.91351 0.83334 0.75586 0.75011 0.91121 0.91135 0.90916 0.90980 0.91436 0.91460 0.89183 0.90068 0.91532 0.90334 0.91621 0.91644 0.90110 0.80557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.17 11.81 55.50 0.66 -20.52 16 2 C 0.05 1.19 5.50 -17.50 -0.10 1.09 16 3 Si 0.94 18.69 29.55 -169.99 -5.02 13.67 16 4 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 5 H -0.28 -5.45 7.11 56.52 0.40 -5.05 16 6 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 7 C -0.32 -8.45 10.25 -14.82 -0.15 -8.60 16 8 H 0.12 2.75 7.83 -52.49 -0.41 2.34 16 9 N -0.14 -3.77 3.73 -11.40 -0.04 -3.81 16 10 C -0.08 -1.82 11.50 -16.38 -0.19 -2.01 16 11 C -0.07 -1.63 6.90 -83.92 -0.58 -2.21 16 12 N -0.58 -11.12 5.45 -10.45 -0.06 -11.18 16 13 C 0.48 8.81 7.85 -11.65 -0.09 8.72 16 14 O -0.52 -10.62 13.62 5.44 0.07 -10.54 16 15 C 0.51 7.87 7.88 -11.65 -0.09 7.78 16 16 O -0.53 -8.88 16.47 5.49 0.09 -8.79 16 17 N -0.71 -8.31 5.55 -60.78 -0.34 -8.65 16 18 C 0.12 1.07 5.67 -4.04 -0.02 1.05 16 19 C -0.13 -0.87 5.33 -26.73 -0.14 -1.02 16 20 C -0.11 -0.62 5.04 -26.73 -0.13 -0.75 16 21 C -0.11 -0.63 3.64 -89.81 -0.33 -0.96 16 22 C -0.14 -0.80 7.65 -25.83 -0.20 -1.00 16 23 C -0.14 -0.78 8.09 -25.83 -0.21 -0.99 16 24 C -0.14 -0.75 7.64 -25.92 -0.20 -0.95 16 25 C -0.03 -0.69 10.85 -17.02 -0.18 -0.87 16 26 N -0.26 -7.49 10.39 30.81 0.32 -7.17 16 27 H 0.28 6.94 8.31 -40.82 -0.34 6.60 16 28 H 0.15 2.94 8.06 -52.49 -0.42 2.52 16 29 H 0.41 6.74 8.29 -40.82 -0.34 6.40 16 30 H 0.41 4.48 7.94 -40.82 -0.32 4.15 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.39 8.14 -51.92 -0.42 -0.04 16 36 H 0.07 0.39 7.88 -51.93 -0.41 -0.02 16 37 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.08 0.46 7.92 -51.93 -0.41 0.05 16 39 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 40 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 42 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.08 0.42 8.10 -51.93 -0.42 0.00 16 44 H 0.18 4.45 5.92 -52.48 -0.31 4.14 16 LS Contribution 373.33 15.07 5.63 5.63 Total: -1.00 -32.36 373.33 -7.72 -40.08 By element: Atomic # 1 Polarization: 18.41 SS G_CDS: -6.41 Total: 12.00 kcal Atomic # 6 Polarization: 1.90 SS G_CDS: -2.61 Total: -0.71 kcal Atomic # 7 Polarization: -51.87 SS G_CDS: 0.54 Total: -51.33 kcal Atomic # 8 Polarization: -19.49 SS G_CDS: 0.16 Total: -19.33 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -5.02 Total: 13.67 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.36 -7.72 -40.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850655670.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.094 kcal (2) G-P(sol) polarization free energy of solvation -32.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.078 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds