Wall clock time and date at job start Tue Mar 31 2020 12:24:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31277 * 1 3 3 Si 1.86804 * 119.99862 * 2 1 4 4 H 1.48494 * 109.47479 * 269.99934 * 3 2 1 5 5 H 1.48497 * 109.47170 * 30.00290 * 3 2 1 6 6 H 1.48508 * 109.46898 * 150.00077 * 3 2 1 7 7 C 1.39005 * 120.00165 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00323 * 180.02562 * 7 2 1 9 9 N 1.37298 * 119.99629 * 0.02562 * 7 2 1 10 10 C 1.36446 * 126.05200 * 179.97438 * 9 7 2 11 11 C 1.35780 * 107.49559 * 179.97438 * 10 9 7 12 12 N 1.40299 * 126.10027 * 179.97438 * 11 10 9 13 13 C 1.34773 * 120.00287 * 179.97438 * 12 11 10 14 14 O 1.21413 * 120.00008 * 0.02562 * 13 12 11 15 15 C 1.49310 * 120.00416 * 179.72624 * 13 12 11 16 16 O 1.21363 * 119.99484 * 0.28183 * 15 13 12 17 17 N 1.34769 * 120.00238 * 180.27495 * 15 13 12 18 18 C 1.46507 * 120.00057 * 180.02562 * 17 15 13 19 19 C 1.52996 * 109.47159 * 180.02562 * 18 17 15 20 20 C 1.53000 * 109.47271 * 180.02562 * 19 18 17 21 21 C 1.52996 * 109.47271 * 180.02562 * 20 19 18 22 22 C 1.53774 * 113.61262 * 274.13197 * 21 20 19 23 23 C 1.53952 * 87.01959 * 220.04942 * 22 21 20 24 24 C 1.53770 * 87.11141 * 25.36482 * 23 22 21 25 25 C 1.40723 * 107.80390 * 0.26654 * 11 10 9 26 26 N 1.30879 * 108.37347 * 359.54991 * 25 11 10 27 27 H 0.97001 * 120.00185 * 359.97438 * 1 2 3 28 28 H 1.07995 * 126.25144 * 0.02562 * 10 9 7 29 29 H 0.97001 * 119.99599 * 0.02562 * 12 11 10 30 30 H 0.97000 * 120.00347 * 0.02562 * 17 15 13 31 31 H 1.08994 * 109.46849 * 300.00316 * 18 17 15 32 32 H 1.08998 * 109.46926 * 60.00124 * 18 17 15 33 33 H 1.09000 * 109.47439 * 300.00100 * 19 18 17 34 34 H 1.08998 * 109.47408 * 60.00042 * 19 18 17 35 35 H 1.09008 * 109.46645 * 299.99994 * 20 19 18 36 36 H 1.08998 * 109.47049 * 59.99604 * 20 19 18 37 37 H 1.08999 * 112.85261 * 45.33212 * 21 20 19 38 38 H 1.09002 * 113.61838 * 334.57029 * 22 21 20 39 39 H 1.08999 * 113.61490 * 105.47487 * 22 21 20 40 40 H 1.09006 * 113.53970 * 270.80681 * 23 22 21 41 41 H 1.09002 * 113.66493 * 139.93796 * 23 22 21 42 42 H 1.09006 * 113.61522 * 220.08707 * 24 23 22 43 43 H 1.08999 * 113.69178 * 89.19896 * 24 23 22 44 44 H 1.08003 * 125.81497 * 179.74168 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3128 0.0000 0.0000 3 14 2.2468 1.6178 0.0000 4 1 2.4943 2.0465 -1.4000 5 1 1.4442 2.6527 0.7001 6 1 3.5444 1.4402 0.7001 7 6 2.0078 -1.2038 0.0005 8 1 3.0878 -1.2038 0.0010 9 7 1.3213 -2.3928 0.0005 10 6 1.8751 -3.6398 0.0005 11 6 0.8572 -4.5385 0.0011 12 7 0.9878 -5.9354 0.0008 13 6 -0.1115 -6.7150 0.0020 14 8 -1.2149 -6.2085 0.0028 15 6 0.0275 -8.2016 -0.0045 16 8 1.1304 -8.7079 -0.0057 17 7 -1.0719 -8.9812 -0.0089 18 6 -0.9355 -10.4399 -0.0148 19 6 -2.3242 -11.0819 -0.0196 20 6 -2.1818 -12.6053 -0.0250 21 6 -3.5705 -13.2473 -0.0305 22 6 -4.1753 -13.4189 1.3729 23 6 -4.6935 -14.7875 0.8945 24 6 -3.5393 -14.7821 -0.1215 25 6 -0.3521 -3.8189 -0.0048 26 7 -0.0715 -2.5406 0.0011 27 1 -0.4850 0.8400 0.0004 28 1 2.9302 -3.8700 0.0009 29 1 1.8694 -6.3400 0.0005 30 1 -1.9534 -8.5766 -0.0083 31 1 -0.3891 -10.7501 -0.9053 32 1 -0.3911 -10.7574 0.8745 33 1 -2.8711 -10.7717 0.8708 34 1 -2.8683 -10.7644 -0.9091 35 1 -1.6348 -12.9158 -0.9153 36 1 -1.6379 -12.9225 0.8647 37 1 -4.2495 -12.7813 -0.7446 38 1 -3.4292 -13.4870 2.1646 39 1 -4.9679 -12.7051 1.5971 40 1 -5.6806 -14.7426 0.4344 41 1 -4.6107 -15.5734 1.6453 42 1 -3.8190 -15.1672 -1.1022 43 1 -2.6183 -15.2235 0.2594 44 1 -1.3430 -4.2484 -0.0098 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000850655670.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:44 Heat of formation + Delta-G solvation = -2.469381 kcal Electronic energy + Delta-G solvation = -25150.963301 eV Core-core repulsion = 21297.658767 eV Total energy + Delta-G solvation = -3853.304533 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.02151 -41.16349 -39.85278 -39.39534 -36.94800 -35.97950 -35.00148 -33.54220 -32.29795 -29.95904 -28.83666 -27.11645 -26.43572 -25.53762 -23.75987 -22.87894 -22.35495 -21.62371 -21.18055 -20.21066 -19.60666 -19.11552 -17.68935 -17.45071 -17.19009 -16.75017 -16.60002 -16.41027 -16.08164 -15.73719 -15.43539 -15.37558 -14.91773 -14.79584 -14.74772 -13.93381 -13.64708 -13.51399 -13.38398 -13.25936 -13.00915 -12.96390 -12.90808 -12.53375 -12.49437 -12.14303 -12.08420 -11.97143 -11.70588 -11.36220 -11.06942 -10.98978 -10.90988 -10.87297 -10.55184 -10.29921 -10.14333 -8.62782 -8.48935 -6.26879 0.28443 1.29574 1.31519 1.42737 1.59032 1.72611 2.04151 2.12270 2.53247 2.59192 2.94440 3.07627 3.53205 3.67495 3.79093 3.83170 4.02357 4.10448 4.13955 4.38504 4.39539 4.52098 4.64381 4.71706 4.77069 4.84571 4.93473 4.95390 4.95589 4.98059 5.04669 5.12115 5.12723 5.18405 5.21727 5.28825 5.30437 5.39468 5.50930 5.70376 5.90088 6.00962 6.24938 6.48654 6.67259 6.80591 7.07028 7.40973 7.62508 8.50295 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.046644 B = 0.001708 C = 0.001660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.147993 B =16390.601393 C =16862.360264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C -0.004 4.004 3 Si 1.020 2.980 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.245 1.245 7 C -0.354 4.354 8 H 0.142 0.858 9 N -0.163 5.163 10 C -0.075 4.075 11 C -0.058 4.058 12 N -0.583 5.583 13 C 0.485 3.515 14 O -0.544 6.544 15 C 0.523 3.477 16 O -0.543 6.543 17 N -0.688 5.688 18 C 0.115 3.885 19 C -0.123 4.123 20 C -0.102 4.102 21 C -0.110 4.110 22 C -0.142 4.142 23 C -0.146 4.146 24 C -0.139 4.139 25 C -0.048 4.048 26 N -0.308 5.308 27 H 0.278 0.722 28 H 0.188 0.812 29 H 0.423 0.577 30 H 0.419 0.581 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.090 0.910 38 H 0.081 0.919 39 H 0.063 0.937 40 H 0.080 0.920 41 H 0.067 0.933 42 H 0.067 0.933 43 H 0.083 0.917 44 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.626 -24.736 0.403 25.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C -0.217 4.217 3 Si 0.838 3.162 4 H -0.189 1.189 5 H -0.201 1.201 6 H -0.168 1.168 7 C -0.485 4.485 8 H 0.159 0.841 9 N 0.069 4.931 10 C -0.226 4.226 11 C -0.165 4.165 12 N -0.227 5.227 13 C 0.267 3.733 14 O -0.422 6.422 15 C 0.303 3.697 16 O -0.421 6.421 17 N -0.341 5.341 18 C -0.007 4.007 19 C -0.161 4.161 20 C -0.140 4.140 21 C -0.129 4.129 22 C -0.179 4.179 23 C -0.184 4.184 24 C -0.176 4.176 25 C -0.223 4.223 26 N -0.140 5.140 27 H 0.088 0.912 28 H 0.205 0.795 29 H 0.261 0.739 30 H 0.257 0.743 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.108 0.892 38 H 0.100 0.900 39 H 0.082 0.918 40 H 0.098 0.902 41 H 0.086 0.914 42 H 0.085 0.915 43 H 0.101 0.899 44 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -4.297 -23.469 0.412 23.863 hybrid contribution 0.371 -0.059 -0.001 0.375 sum -3.926 -23.528 0.411 23.856 Atomic orbital electron populations 1.70372 1.08396 1.29283 1.36794 1.26879 0.96490 1.04289 0.93994 0.84584 0.78303 0.74013 0.79265 1.18871 1.20097 1.16796 1.20673 0.93077 0.80822 1.53975 0.84069 1.44842 1.03728 1.04737 1.39773 1.22004 0.98843 0.84185 1.17534 1.17314 0.93504 0.82582 1.23059 1.42092 1.09854 1.02948 1.67842 1.20316 0.84609 0.88415 0.79954 1.90646 1.26318 1.75218 1.50023 1.19652 0.85417 0.86742 0.77905 1.90735 1.26181 1.75382 1.49755 1.45790 1.08990 1.07802 1.71538 1.21695 0.99513 0.76573 1.02889 1.21754 0.94508 0.96129 1.03690 1.21450 0.96786 0.92947 1.02826 1.22551 0.96721 0.95793 0.97797 1.23047 1.00535 0.97457 0.96885 1.22865 0.98576 0.97726 0.99196 1.22952 0.99082 0.95883 0.99676 1.24251 0.98925 0.90763 1.08376 1.78157 0.91849 1.16465 1.27486 0.91223 0.79485 0.73907 0.74333 0.90896 0.90952 0.90639 0.90504 0.91121 0.91248 0.89196 0.90045 0.91773 0.90161 0.91419 0.91452 0.89883 0.80718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -46.68 11.81 21.66 0.26 -46.43 16 2 C 0.00 -0.22 5.50 84.96 0.47 0.24 16 3 Si 1.02 38.05 29.55 68.60 2.03 40.08 16 4 H -0.26 -9.50 7.11 99.48 0.71 -8.79 16 5 H -0.28 -10.19 7.11 99.48 0.71 -9.48 16 6 H -0.24 -8.31 7.11 99.48 0.71 -7.61 16 7 C -0.35 -18.60 10.25 84.02 0.86 -17.74 16 8 H 0.14 6.42 7.83 -2.91 -0.02 6.40 16 9 N -0.16 -8.98 3.73 -189.98 -0.71 -9.69 16 10 C -0.07 -3.48 11.50 83.41 0.96 -2.52 16 11 C -0.06 -2.70 6.90 37.82 0.26 -2.44 16 12 N -0.58 -21.61 5.45 -305.32 -1.66 -23.27 16 13 C 0.49 17.27 7.85 87.23 0.69 17.96 16 14 O -0.54 -21.95 13.62 -3.44 -0.05 -22.00 16 15 C 0.52 15.15 7.88 87.23 0.69 15.84 16 16 O -0.54 -17.16 16.47 -3.29 -0.05 -17.21 16 17 N -0.69 -14.94 5.55 -464.56 -2.58 -17.52 16 18 C 0.12 1.86 5.67 86.38 0.49 2.35 16 19 C -0.12 -1.37 5.33 30.59 0.16 -1.20 16 20 C -0.10 -0.98 5.04 30.59 0.15 -0.82 16 21 C -0.11 -1.07 3.64 -10.27 -0.04 -1.10 16 22 C -0.14 -1.44 7.65 31.18 0.24 -1.20 16 23 C -0.15 -1.39 8.09 31.18 0.25 -1.14 16 24 C -0.14 -1.29 7.64 31.12 0.24 -1.05 16 25 C -0.05 -2.55 10.85 85.44 0.93 -1.62 16 26 N -0.31 -18.29 10.39 -56.43 -0.59 -18.88 16 27 H 0.28 14.49 8.31 -92.71 -0.77 13.72 16 28 H 0.19 6.96 8.06 -2.91 -0.02 6.94 16 29 H 0.42 13.21 8.29 -92.71 -0.77 12.44 16 30 H 0.42 8.35 7.94 -92.71 -0.74 7.62 16 31 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.07 0.65 8.14 -2.38 -0.02 0.64 16 36 H 0.07 0.65 7.88 -2.39 -0.02 0.64 16 37 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.08 0.82 7.92 -2.39 -0.02 0.80 16 39 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 40 H 0.08 0.73 8.14 -2.38 -0.02 0.71 16 41 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 42 H 0.07 0.60 8.14 -2.38 -0.02 0.58 16 43 H 0.08 0.73 8.10 -2.39 -0.02 0.71 16 44 H 0.18 9.14 5.92 -2.91 -0.02 9.12 16 Total: -1.00 -71.38 373.33 2.52 -68.86 By element: Atomic # 1 Polarization: 40.98 SS G_CDS: -0.47 Total: 40.51 kcal Atomic # 6 Polarization: -0.79 SS G_CDS: 6.35 Total: 5.55 kcal Atomic # 7 Polarization: -110.51 SS G_CDS: -5.28 Total: -115.79 kcal Atomic # 8 Polarization: -39.11 SS G_CDS: -0.10 Total: -39.21 kcal Atomic # 14 Polarization: 38.05 SS G_CDS: 2.03 Total: 40.08 kcal Total: -71.38 2.52 -68.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850655670.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.389 kcal (2) G-P(sol) polarization free energy of solvation -71.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds