Wall clock time and date at job start Tue Mar 31 2020 12:19:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 119.99863 * 2 1 4 4 H 1.48500 * 109.47021 * 274.95228 * 3 2 1 5 5 H 1.48500 * 109.46834 * 34.95411 * 3 2 1 6 6 H 1.48495 * 109.46830 * 154.95283 * 3 2 1 7 7 C 1.37877 * 119.99846 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00089 * 354.98189 * 7 2 1 9 9 C 1.50700 * 119.99885 * 174.98322 * 7 2 1 10 10 H 1.09008 * 109.49672 * 335.00820 * 9 7 2 11 11 C 1.53036 * 109.52304 * 214.92256 * 9 7 2 12 12 C 1.53049 * 109.53637 * 178.66303 * 11 9 7 13 13 C 1.52765 * 109.37813 * 61.24272 * 12 11 9 14 14 N 1.46927 * 109.00993 * 305.58841 * 13 12 11 15 15 C 1.34778 * 120.62802 * 233.58836 * 14 13 12 16 16 O 1.21584 * 119.99965 * 184.75414 * 15 14 13 17 17 N 1.34773 * 119.99913 * 4.75015 * 15 14 13 18 18 C 1.46502 * 120.00126 * 174.89504 * 17 15 14 19 19 C 1.50697 * 109.47523 * 180.02562 * 18 17 15 20 20 N 1.31123 * 126.55332 * 89.70481 * 19 18 17 21 21 C 1.34498 * 105.61782 * 179.91730 * 20 19 18 22 22 C 1.50701 * 126.29273 * 180.12877 * 21 20 19 23 23 C 1.52995 * 117.50165 * 188.91301 * 22 21 20 24 24 C 1.52997 * 60.00053 * 252.50892 * 23 22 21 25 25 N 1.29947 * 107.42063 * 0.35004 * 21 20 19 26 26 O 1.21302 * 110.25082 * 359.78208 * 25 21 20 27 27 C 1.46919 * 118.74061 * 53.30711 * 14 13 12 28 28 H 0.96997 * 119.99917 * 359.97438 * 1 2 3 29 29 H 1.08995 * 109.46473 * 298.68480 * 11 9 7 30 30 H 1.08999 * 109.46089 * 58.66400 * 11 9 7 31 31 H 1.09003 * 109.49459 * 181.31361 * 12 11 9 32 32 H 1.08995 * 109.50063 * 301.38917 * 12 11 9 33 33 H 1.08998 * 109.50870 * 185.70019 * 13 12 11 34 34 H 1.09005 * 109.43552 * 65.42363 * 13 12 11 35 35 H 0.97002 * 120.00649 * 354.88848 * 17 15 14 36 36 H 1.09003 * 109.46731 * 300.00093 * 18 17 15 37 37 H 1.09005 * 109.47421 * 59.99451 * 18 17 15 38 38 H 1.09002 * 115.54680 * 334.61949 * 22 21 20 39 39 H 1.08998 * 117.49864 * 359.97438 * 23 22 21 40 40 H 1.09001 * 117.50155 * 145.01773 * 23 22 21 41 41 H 1.08999 * 117.50140 * 252.51189 * 24 23 22 42 42 H 1.09001 * 117.49848 * 107.48672 * 24 23 22 43 43 H 1.09002 * 109.58585 * 66.43170 * 27 14 13 44 44 H 1.08993 * 109.59031 * 186.71609 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.3920 2.1069 -1.3948 5 1 1.5028 2.6202 0.8021 6 1 3.5951 1.4122 0.5927 7 6 2.0045 -1.1941 -0.0005 8 1 1.4677 -2.1276 0.0809 9 6 3.5072 -1.1965 -0.1147 10 1 3.8356 -0.2854 -0.6150 11 6 3.9566 -2.4146 -0.9248 12 6 5.4802 -2.3995 -1.0692 13 6 6.1214 -2.4757 0.3152 14 7 5.5834 -1.3945 1.1520 15 6 6.4109 -0.5365 1.7810 16 8 5.9581 0.2996 2.5388 17 7 7.7402 -0.6054 1.5701 18 6 8.6292 0.3958 2.1646 19 6 10.0544 0.0950 1.7783 20 7 10.6860 0.5374 0.7178 21 6 11.9234 0.0152 0.7893 22 6 13.0401 0.2284 -0.2000 23 6 14.2998 -0.6246 -0.0380 24 6 14.3321 0.8628 0.3189 25 7 11.9777 -0.7108 1.8657 26 8 10.9142 -0.6784 2.4481 27 6 4.1262 -1.2625 1.2851 28 1 -0.4850 0.8400 0.0004 29 1 3.6496 -3.3257 -0.4113 30 1 3.4981 -2.3827 -1.9131 31 1 5.7975 -3.2546 -1.6661 32 1 5.7899 -1.4774 -1.5610 33 1 7.2016 -2.3634 0.2228 34 1 5.8898 -3.4391 0.7696 35 1 8.1085 -1.3181 1.0247 36 1 8.3557 1.3862 1.8006 37 1 8.5330 0.3684 3.2501 38 1 12.7284 0.4788 -1.2140 39 1 14.3211 -1.3397 0.7843 40 1 14.8171 -0.9358 -0.9457 41 1 14.8705 1.5303 -0.3539 42 1 14.3744 1.1259 1.3758 43 1 3.7285 -2.1249 1.8201 44 1 3.8905 -0.3512 1.8345 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000851965191.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:22 Heat of formation + Delta-G solvation = 73.934176 kcal Electronic energy + Delta-G solvation = -26720.463098 eV Core-core repulsion = 22870.471672 eV Total energy + Delta-G solvation = -3849.991427 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -46.01648 -40.13667 -38.17238 -37.33861 -36.02455 -34.95191 -33.45223 -32.35485 -31.79558 -30.50658 -27.84009 -25.73569 -25.25205 -24.51711 -23.50333 -22.92712 -21.93029 -20.92272 -20.37156 -19.14658 -18.50648 -18.26187 -17.76859 -16.78737 -16.28803 -16.09499 -15.54345 -15.38522 -14.83873 -14.25160 -14.10802 -13.95361 -13.77633 -13.66202 -13.06027 -12.94745 -12.70729 -12.62492 -12.50008 -12.39986 -12.23619 -12.09387 -11.50506 -11.35745 -11.26888 -11.08226 -11.06576 -10.63661 -10.58113 -10.21076 -10.08667 -9.86239 -9.70095 -9.38254 -9.27233 -9.10876 -8.62457 -8.02315 -6.11260 -4.12210 0.60466 1.66505 2.27235 2.88790 3.04590 3.26094 3.32304 3.41906 3.43352 3.53758 3.65393 4.01315 4.19707 4.27254 4.38911 4.43809 4.72484 5.03946 5.07185 5.07973 5.10546 5.19676 5.23857 5.31752 5.34118 5.46846 5.48910 5.54961 5.58381 5.78904 5.94700 6.13026 6.19618 6.22902 6.37937 6.57750 6.63425 6.72423 6.87580 7.12211 7.28468 7.38457 7.73614 7.73908 8.11488 8.47702 8.78255 8.94091 9.52131 11.01048 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.021941 B = 0.002712 C = 0.002643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.843267 B =10323.574806 C =10592.959796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.075 3.925 3 Si 0.869 3.131 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.253 1.253 7 C -0.514 4.514 8 H 0.075 0.925 9 C 0.006 3.994 10 H 0.035 0.965 11 C -0.103 4.103 12 C -0.138 4.138 13 C 0.116 3.884 14 N -0.620 5.620 15 C 0.709 3.291 16 O -0.586 6.586 17 N -0.753 5.753 18 C 0.236 3.764 19 C 0.171 3.829 20 N -0.458 5.458 21 C 0.200 3.800 22 C -0.081 4.081 23 C -0.158 4.158 24 C -0.156 4.156 25 N -0.379 5.379 26 O 0.088 5.912 27 C 0.128 3.872 28 H 0.265 0.735 29 H 0.054 0.946 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.068 0.932 35 H 0.397 0.603 36 H 0.114 0.886 37 H 0.107 0.893 38 H 0.138 0.862 39 H 0.104 0.896 40 H 0.109 0.891 41 H 0.110 0.890 42 H 0.098 0.902 43 H 0.060 0.940 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.033 -2.407 0.131 27.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.128 4.128 3 Si 0.696 3.304 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.177 1.177 7 C -0.552 4.552 8 H 0.093 0.907 9 C -0.014 4.014 10 H 0.053 0.947 11 C -0.141 4.141 12 C -0.176 4.176 13 C -0.008 4.008 14 N -0.356 5.356 15 C 0.410 3.590 16 O -0.463 6.463 17 N -0.415 5.415 18 C 0.110 3.890 19 C -0.050 4.050 20 N -0.192 5.192 21 C -0.072 4.072 22 C -0.101 4.101 23 C -0.196 4.196 24 C -0.194 4.194 25 N -0.085 5.085 26 O 0.028 5.972 27 C 0.007 3.993 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.086 0.914 35 H 0.234 0.766 36 H 0.131 0.869 37 H 0.125 0.875 38 H 0.155 0.845 39 H 0.122 0.878 40 H 0.127 0.873 41 H 0.128 0.872 42 H 0.116 0.884 43 H 0.079 0.921 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 27.249 -1.878 0.570 27.320 hybrid contribution 0.401 0.580 -0.283 0.760 sum 27.650 -1.298 0.286 27.682 Atomic orbital electron populations 1.69905 1.06388 1.27146 1.49793 1.25078 0.94693 0.99113 0.93877 0.86957 0.81433 0.83714 0.78297 1.20613 1.21344 1.17674 1.20879 0.88420 0.94646 1.51227 0.90682 1.19497 0.96392 0.94538 0.90996 0.94721 1.21551 0.91672 0.99865 1.00998 1.21943 0.98720 1.01561 0.95412 1.21478 0.96434 0.90764 0.92105 1.47768 1.07982 1.30491 1.49399 1.15746 0.79983 0.82158 0.81073 1.90928 1.75335 1.39721 1.40328 1.45145 1.05712 1.32664 1.58015 1.19394 0.75151 0.93993 1.00467 1.28792 0.97439 0.90893 0.87885 1.71920 1.03928 1.23643 1.19661 1.24854 0.93378 0.94513 0.94449 1.20102 0.84630 1.08364 0.96985 1.23093 0.97748 0.94355 1.04371 1.23091 0.97292 0.96361 1.02674 1.74609 1.02816 1.21272 1.09769 1.85349 1.15938 1.52105 1.43822 1.22460 0.73403 1.02341 1.01066 0.92551 0.92700 0.92129 0.91750 0.92103 0.92102 0.91411 0.76582 0.86860 0.87486 0.84451 0.87786 0.87280 0.87203 0.88384 0.92144 0.89727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.97 13.96 55.43 0.77 -26.19 16 2 C 0.08 2.14 5.47 -17.82 -0.10 2.04 16 3 Si 0.87 21.84 26.62 -169.99 -4.53 17.32 16 4 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 6 H -0.25 -6.35 5.98 56.52 0.34 -6.01 16 7 C -0.51 -13.83 8.87 -34.44 -0.31 -14.13 16 8 H 0.08 2.18 8.06 -52.49 -0.42 1.75 16 9 C 0.01 0.13 1.79 -91.65 -0.16 -0.04 16 10 H 0.03 0.82 5.60 -51.92 -0.29 0.53 16 11 C -0.10 -1.89 5.15 -26.69 -0.14 -2.02 16 12 C -0.14 -1.97 6.07 -26.83 -0.16 -2.13 16 13 C 0.12 1.54 6.40 -3.93 -0.03 1.52 16 14 N -0.62 -10.78 2.98 -178.77 -0.53 -11.31 16 15 C 0.71 12.30 8.30 -86.92 -0.72 11.58 16 16 O -0.59 -12.41 15.78 5.29 0.08 -12.33 16 17 N -0.75 -9.53 5.46 -66.41 -0.36 -9.89 16 18 C 0.24 2.52 6.30 -5.19 -0.03 2.49 16 19 C 0.17 1.82 7.88 -13.06 -0.10 1.71 16 20 N -0.46 -5.38 11.55 -9.87 -0.11 -5.50 16 21 C 0.20 2.17 7.74 -156.37 -1.21 0.96 16 22 C -0.08 -0.64 6.33 -91.78 -0.58 -1.22 16 23 C -0.16 -0.97 10.14 -26.74 -0.27 -1.24 16 24 C -0.16 -0.95 10.23 -26.73 -0.27 -1.23 16 25 N -0.38 -4.30 11.77 30.90 0.36 -3.93 16 26 O 0.09 0.95 11.31 18.11 0.20 1.16 16 27 C 0.13 2.70 5.50 -3.71 -0.02 2.68 16 28 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 29 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.06 0.64 5.57 -51.93 -0.29 0.35 16 34 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.40 4.27 5.92 -40.82 -0.24 4.03 16 36 H 0.11 1.25 8.14 -51.93 -0.42 0.82 16 37 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.14 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.10 0.74 7.91 -51.93 -0.41 0.33 16 40 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 44 H 0.08 2.02 5.92 -51.93 -0.31 1.71 16 LS Contribution 360.78 15.07 5.44 5.44 Total: -1.00 -33.24 360.78 -9.01 -42.26 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -6.23 Total: 2.02 kcal Atomic # 6 Polarization: 5.07 SS G_CDS: -4.11 Total: 0.96 kcal Atomic # 7 Polarization: -56.95 SS G_CDS: 0.13 Total: -56.82 kcal Atomic # 8 Polarization: -11.46 SS G_CDS: 0.29 Total: -11.17 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.53 Total: 17.32 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.24 -9.01 -42.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000851965191.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.191 kcal (2) G-P(sol) polarization free energy of solvation -33.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.256 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds