Wall clock time and date at job start Tue Mar 31 2020 12:19:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 119.99863 * 2 1 4 4 H 1.48500 * 109.47021 * 274.95228 * 3 2 1 5 5 H 1.48500 * 109.46834 * 34.95411 * 3 2 1 6 6 H 1.48495 * 109.46830 * 154.95283 * 3 2 1 7 7 C 1.37877 * 119.99846 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00089 * 354.98189 * 7 2 1 9 9 C 1.50700 * 119.99885 * 174.98322 * 7 2 1 10 10 H 1.09008 * 109.49672 * 335.00820 * 9 7 2 11 11 C 1.53036 * 109.52304 * 214.92256 * 9 7 2 12 12 C 1.53049 * 109.53637 * 178.66303 * 11 9 7 13 13 C 1.52765 * 109.37813 * 61.24272 * 12 11 9 14 14 N 1.46927 * 109.00993 * 305.58841 * 13 12 11 15 15 C 1.34778 * 120.62802 * 233.58836 * 14 13 12 16 16 O 1.21584 * 119.99965 * 184.75414 * 15 14 13 17 17 N 1.34773 * 119.99913 * 4.75015 * 15 14 13 18 18 C 1.46502 * 120.00126 * 174.89504 * 17 15 14 19 19 C 1.50697 * 109.47523 * 180.02562 * 18 17 15 20 20 N 1.31123 * 126.55332 * 89.70481 * 19 18 17 21 21 C 1.34498 * 105.61782 * 179.91730 * 20 19 18 22 22 C 1.50701 * 126.29273 * 180.12877 * 21 20 19 23 23 C 1.52995 * 117.50165 * 188.91301 * 22 21 20 24 24 C 1.52997 * 60.00053 * 252.50892 * 23 22 21 25 25 N 1.29947 * 107.42063 * 0.35004 * 21 20 19 26 26 O 1.21302 * 110.25082 * 359.78208 * 25 21 20 27 27 C 1.46919 * 118.74061 * 53.30711 * 14 13 12 28 28 H 0.96997 * 119.99917 * 359.97438 * 1 2 3 29 29 H 1.08995 * 109.46473 * 298.68480 * 11 9 7 30 30 H 1.08999 * 109.46089 * 58.66400 * 11 9 7 31 31 H 1.09003 * 109.49459 * 181.31361 * 12 11 9 32 32 H 1.08995 * 109.50063 * 301.38917 * 12 11 9 33 33 H 1.08998 * 109.50870 * 185.70019 * 13 12 11 34 34 H 1.09005 * 109.43552 * 65.42363 * 13 12 11 35 35 H 0.97002 * 120.00649 * 354.88848 * 17 15 14 36 36 H 1.09003 * 109.46731 * 300.00093 * 18 17 15 37 37 H 1.09005 * 109.47421 * 59.99451 * 18 17 15 38 38 H 1.09002 * 115.54680 * 334.61949 * 22 21 20 39 39 H 1.08998 * 117.49864 * 359.97438 * 23 22 21 40 40 H 1.09001 * 117.50155 * 145.01773 * 23 22 21 41 41 H 1.08999 * 117.50140 * 252.51189 * 24 23 22 42 42 H 1.09001 * 117.49848 * 107.48672 * 24 23 22 43 43 H 1.09002 * 109.58585 * 66.43170 * 27 14 13 44 44 H 1.08993 * 109.59031 * 186.71609 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.3920 2.1069 -1.3948 5 1 1.5028 2.6202 0.8021 6 1 3.5951 1.4122 0.5927 7 6 2.0045 -1.1941 -0.0005 8 1 1.4677 -2.1276 0.0809 9 6 3.5072 -1.1965 -0.1147 10 1 3.8356 -0.2854 -0.6150 11 6 3.9566 -2.4146 -0.9248 12 6 5.4802 -2.3995 -1.0692 13 6 6.1214 -2.4757 0.3152 14 7 5.5834 -1.3945 1.1520 15 6 6.4109 -0.5365 1.7810 16 8 5.9581 0.2996 2.5388 17 7 7.7402 -0.6054 1.5701 18 6 8.6292 0.3958 2.1646 19 6 10.0544 0.0950 1.7783 20 7 10.6860 0.5374 0.7178 21 6 11.9234 0.0152 0.7893 22 6 13.0401 0.2284 -0.2000 23 6 14.2998 -0.6246 -0.0380 24 6 14.3321 0.8628 0.3189 25 7 11.9777 -0.7108 1.8657 26 8 10.9142 -0.6784 2.4481 27 6 4.1262 -1.2625 1.2851 28 1 -0.4850 0.8400 0.0004 29 1 3.6496 -3.3257 -0.4113 30 1 3.4981 -2.3827 -1.9131 31 1 5.7975 -3.2546 -1.6661 32 1 5.7899 -1.4774 -1.5610 33 1 7.2016 -2.3634 0.2228 34 1 5.8898 -3.4391 0.7696 35 1 8.1085 -1.3181 1.0247 36 1 8.3557 1.3862 1.8006 37 1 8.5330 0.3684 3.2501 38 1 12.7284 0.4788 -1.2140 39 1 14.3211 -1.3397 0.7843 40 1 14.8171 -0.9358 -0.9457 41 1 14.8705 1.5303 -0.3539 42 1 14.3744 1.1259 1.3758 43 1 3.7285 -2.1249 1.8201 44 1 3.8905 -0.3512 1.8345 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000851965191.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:21 Heat of formation + Delta-G solvation = 50.339713 kcal Electronic energy + Delta-G solvation = -26721.486231 eV Core-core repulsion = 22870.471672 eV Total energy + Delta-G solvation = -3851.014559 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -46.84094 -41.47660 -38.75631 -38.72502 -36.97717 -35.98552 -35.20850 -33.74550 -33.02683 -32.10179 -28.90439 -27.00918 -26.44510 -25.90535 -24.36768 -23.38556 -23.37918 -21.79500 -21.67536 -20.54388 -19.55050 -19.33336 -18.87698 -18.59025 -17.43682 -16.80840 -16.72699 -16.58500 -16.05914 -15.52559 -15.37260 -15.26161 -15.08770 -14.90212 -14.56554 -14.32893 -13.94680 -13.81225 -13.51363 -13.45179 -13.17353 -13.05989 -12.79638 -12.54280 -12.53570 -12.32051 -12.05968 -11.99522 -11.74839 -11.61696 -11.57404 -11.37216 -11.08502 -10.97003 -10.82310 -10.75295 -10.43552 -9.44370 -8.32017 -6.34026 -0.23523 0.85775 1.28470 1.36050 1.37775 1.49884 1.78450 2.07597 2.31112 2.32337 2.68304 2.85853 2.96233 3.07056 3.53756 3.73763 3.91678 3.96816 4.01132 4.13336 4.17309 4.27798 4.37472 4.48155 4.49910 4.60521 4.66014 4.68387 4.72951 4.78203 4.89030 4.98987 5.00141 5.03896 5.09561 5.12285 5.14844 5.24342 5.43458 5.60127 5.66202 5.71005 5.92580 6.32010 6.74847 6.88371 6.93000 7.32585 7.45065 8.84333 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.021941 B = 0.002712 C = 0.002643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.843267 B =10323.574806 C =10592.959796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.021 3.979 3 Si 0.930 3.070 4 H -0.270 1.270 5 H -0.290 1.290 6 H -0.255 1.255 7 C -0.508 4.508 8 H 0.043 0.957 9 C 0.005 3.995 10 H 0.023 0.977 11 C -0.101 4.101 12 C -0.129 4.129 13 C 0.111 3.889 14 N -0.625 5.625 15 C 0.708 3.292 16 O -0.629 6.629 17 N -0.734 5.734 18 C 0.239 3.761 19 C 0.181 3.819 20 N -0.475 5.475 21 C 0.197 3.803 22 C -0.102 4.102 23 C -0.148 4.148 24 C -0.147 4.147 25 N -0.392 5.392 26 O 0.086 5.914 27 C 0.141 3.859 28 H 0.266 0.734 29 H 0.058 0.942 30 H 0.051 0.949 31 H 0.103 0.897 32 H 0.056 0.944 33 H 0.097 0.903 34 H 0.086 0.914 35 H 0.410 0.590 36 H 0.113 0.887 37 H 0.121 0.879 38 H 0.148 0.852 39 H 0.092 0.908 40 H 0.132 0.868 41 H 0.132 0.868 42 H 0.087 0.913 43 H 0.061 0.939 44 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.644 -2.967 -0.831 30.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.177 4.177 3 Si 0.756 3.244 4 H -0.196 1.196 5 H -0.216 1.216 6 H -0.179 1.179 7 C -0.546 4.546 8 H 0.062 0.938 9 C -0.015 4.015 10 H 0.041 0.959 11 C -0.139 4.139 12 C -0.167 4.167 13 C -0.011 4.011 14 N -0.360 5.360 15 C 0.409 3.591 16 O -0.510 6.510 17 N -0.396 5.396 18 C 0.113 3.887 19 C -0.040 4.040 20 N -0.210 5.210 21 C -0.075 4.075 22 C -0.122 4.122 23 C -0.186 4.186 24 C -0.186 4.186 25 N -0.099 5.099 26 O 0.028 5.972 27 C 0.018 3.982 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.070 0.930 31 H 0.121 0.879 32 H 0.075 0.925 33 H 0.115 0.885 34 H 0.104 0.896 35 H 0.249 0.751 36 H 0.130 0.870 37 H 0.139 0.861 38 H 0.165 0.835 39 H 0.110 0.890 40 H 0.150 0.850 41 H 0.150 0.850 42 H 0.106 0.894 43 H 0.079 0.921 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 30.924 -2.477 -0.415 31.026 hybrid contribution -0.673 0.669 0.026 0.949 sum 30.251 -1.808 -0.389 30.308 Atomic orbital electron populations 1.70026 1.07901 1.27894 1.52427 1.25798 0.95277 1.02331 0.94313 0.85987 0.79867 0.80070 0.78487 1.19568 1.21643 1.17864 1.21203 0.91111 0.93103 1.49226 0.93841 1.19456 0.93399 0.96130 0.92539 0.95905 1.21449 0.95128 0.97708 0.99593 1.21882 0.95074 1.03140 0.96598 1.21800 0.98297 0.90139 0.90827 1.47614 1.06466 1.31701 1.50243 1.15822 0.81149 0.81480 0.80646 1.90902 1.76436 1.41420 1.42204 1.44873 1.04175 1.33098 1.57459 1.19454 0.74748 0.93296 1.01214 1.28614 0.97149 0.90654 0.87624 1.71937 1.04611 1.24221 1.20210 1.25387 0.93731 0.93745 0.94598 1.20361 0.84570 1.10343 0.96919 1.23162 0.96436 0.94096 1.04895 1.23181 0.95952 0.96890 1.02556 1.74614 1.03006 1.21981 1.10274 1.85337 1.15935 1.52129 1.43846 1.21854 0.76211 1.00803 0.99322 0.92538 0.92344 0.93017 0.87851 0.92540 0.88483 0.89559 0.75149 0.86951 0.86089 0.83454 0.88986 0.85001 0.84986 0.89409 0.92058 0.93030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.70 13.96 21.45 0.30 -58.40 16 2 C 0.02 1.22 5.47 84.65 0.46 1.68 16 3 Si 0.93 46.42 26.62 68.60 1.83 48.24 16 4 H -0.27 -12.92 7.11 99.48 0.71 -12.22 16 5 H -0.29 -14.48 7.11 99.48 0.71 -13.77 16 6 H -0.25 -12.68 5.98 99.48 0.59 -12.08 16 7 C -0.51 -28.10 8.87 25.60 0.23 -27.87 16 8 H 0.04 2.62 8.06 -2.91 -0.02 2.60 16 9 C 0.00 0.21 1.79 -11.46 -0.02 0.19 16 10 H 0.02 1.07 5.60 -2.38 -0.01 1.05 16 11 C -0.10 -3.54 5.15 30.62 0.16 -3.38 16 12 C -0.13 -3.19 6.07 30.53 0.19 -3.01 16 13 C 0.11 2.52 6.40 86.22 0.55 3.08 16 14 N -0.62 -20.50 2.98 -837.76 -2.50 -22.99 16 15 C 0.71 23.36 8.30 179.06 1.49 24.85 16 16 O -0.63 -26.36 15.78 -3.98 -0.06 -26.42 16 17 N -0.73 -16.66 5.46 -482.30 -2.63 -19.29 16 18 C 0.24 4.62 6.30 85.63 0.54 5.16 16 19 C 0.18 3.48 7.88 88.38 0.70 4.17 16 20 N -0.48 -10.28 11.55 -303.20 -3.50 -13.78 16 21 C 0.20 3.93 7.74 138.46 1.07 5.00 16 22 C -0.10 -1.40 6.33 -11.54 -0.07 -1.47 16 23 C -0.15 -1.46 10.14 30.59 0.31 -1.15 16 24 C -0.15 -1.46 10.23 30.59 0.31 -1.15 16 25 N -0.39 -8.27 11.77 -60.31 -0.71 -8.98 16 26 O 0.09 1.72 11.31 74.85 0.85 2.57 16 27 C 0.14 5.91 5.50 86.36 0.48 6.38 16 28 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 29 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 30 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.10 1.53 5.57 -2.39 -0.01 1.52 16 34 H 0.09 1.72 8.14 -2.38 -0.02 1.70 16 35 H 0.41 7.28 5.92 -92.71 -0.55 6.73 16 36 H 0.11 2.29 8.14 -2.39 -0.02 2.27 16 37 H 0.12 2.07 8.14 -2.38 -0.02 2.05 16 38 H 0.15 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.09 1.15 7.91 -2.39 -0.02 1.13 16 40 H 0.13 0.68 8.14 -2.39 -0.02 0.66 16 41 H 0.13 0.70 8.14 -2.39 -0.02 0.69 16 42 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.06 2.51 8.14 -2.39 -0.02 2.50 16 44 H 0.05 2.50 5.92 -2.39 -0.01 2.49 16 Total: -1.00 -74.96 360.78 0.32 -74.63 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: 0.37 Total: 11.96 kcal Atomic # 6 Polarization: 6.09 SS G_CDS: 6.38 Total: 12.48 kcal Atomic # 7 Polarization: -114.41 SS G_CDS: -9.04 Total: -123.45 kcal Atomic # 8 Polarization: -24.64 SS G_CDS: 0.78 Total: -23.86 kcal Atomic # 14 Polarization: 46.42 SS G_CDS: 1.83 Total: 48.24 kcal Total: -74.96 0.32 -74.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000851965191.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.972 kcal (2) G-P(sol) polarization free energy of solvation -74.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.633 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds