Wall clock time and date at job start Tue Mar 31 2020 12:19:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 120.00258 * 2 1 4 4 H 1.48491 * 109.47616 * 270.00036 * 3 2 1 5 5 H 1.48504 * 109.46635 * 30.00143 * 3 2 1 6 6 H 1.48505 * 109.46782 * 149.99721 * 3 2 1 7 7 C 1.37880 * 119.99650 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99894 * 180.02562 * 7 2 1 9 9 C 1.50692 * 120.00066 * 0.02562 * 7 2 1 10 10 H 1.09006 * 109.52709 * 60.08536 * 9 7 2 11 11 C 1.53048 * 109.49892 * 180.15809 * 9 7 2 12 12 C 1.53350 * 109.60747 * 181.32556 * 11 9 7 13 13 C 1.53188 * 109.14976 * 298.71267 * 12 11 9 14 14 N 1.46925 * 108.89442 * 54.58200 * 13 12 11 15 15 C 1.34776 * 120.63544 * 126.29468 * 14 13 12 16 16 O 1.21588 * 120.00211 * 174.96212 * 15 14 13 17 17 N 1.34772 * 119.99868 * 354.96390 * 15 14 13 18 18 C 1.46502 * 120.00424 * 185.06863 * 17 15 14 19 19 C 1.50692 * 109.47120 * 180.02562 * 18 17 15 20 20 N 1.31133 * 126.55175 * 89.71964 * 19 18 17 21 21 C 1.34496 * 105.61255 * 179.91125 * 20 19 18 22 22 C 1.50707 * 126.28394 * 180.12239 * 21 20 19 23 23 C 1.52995 * 117.49634 * 188.86215 * 22 21 20 24 24 C 1.52999 * 117.49418 * 120.23997 * 22 21 20 25 25 N 1.29945 * 107.42796 * 0.34689 * 21 20 19 26 26 O 1.21301 * 110.24900 * 359.77797 * 25 21 20 27 27 C 1.46927 * 118.73541 * 306.31796 * 14 13 12 28 28 H 0.97005 * 119.99431 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.45680 * 301.33998 * 11 9 7 30 30 H 1.08998 * 109.45508 * 61.30842 * 11 9 7 31 31 H 1.09005 * 109.68228 * 178.75198 * 12 11 9 32 32 H 1.09002 * 109.47563 * 58.55539 * 12 11 9 33 33 H 1.09000 * 109.59213 * 294.72337 * 13 12 11 34 34 H 1.09003 * 109.58609 * 174.43706 * 13 12 11 35 35 H 0.97004 * 120.00168 * 5.07331 * 17 15 14 36 36 H 1.08998 * 109.47065 * 300.00332 * 18 17 15 37 37 H 1.09000 * 109.46606 * 59.99697 * 18 17 15 38 38 H 1.09000 * 115.55278 * 334.57169 * 22 21 20 39 39 H 1.08999 * 117.50390 * 359.97438 * 23 22 21 40 40 H 1.09001 * 117.49753 * 145.02447 * 23 22 21 41 41 H 1.09005 * 117.49711 * 214.97369 * 24 22 21 42 42 H 1.09001 * 117.50375 * 0.02562 * 24 22 21 43 43 H 1.09007 * 109.58513 * 173.39301 * 27 14 13 44 44 H 1.08994 * 109.59202 * 293.81641 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.3999 5 1 1.4466 2.6526 0.7001 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.6254 -2.5586 -0.8902 11 6 2.2449 -3.6629 0.0052 12 6 1.4810 -4.9922 -0.0282 13 6 0.6022 -5.0983 1.2220 14 7 -0.2566 -3.9089 1.3022 15 6 -1.5934 -4.0337 1.4202 16 8 -2.2847 -3.0459 1.5777 17 7 -2.1639 -5.2534 1.3637 18 6 -3.6233 -5.3810 1.3802 19 6 -4.0009 -6.8381 1.3084 20 7 -4.1747 -7.6507 2.3228 21 6 -4.5014 -8.8386 1.7832 22 6 -4.8053 -10.1074 2.5374 23 6 -4.9510 -11.3950 1.7240 24 6 -6.1868 -10.7340 2.3380 25 7 -4.5021 -8.6925 0.4920 26 8 -4.2171 -7.5505 0.1985 27 6 0.3696 -2.5807 1.2508 28 1 -0.4849 0.8401 -0.0004 29 1 2.8896 -3.5933 -0.8710 30 1 2.8534 -3.6171 0.9083 31 1 2.1881 -5.8216 -0.0473 32 1 0.8531 -5.0282 -0.9185 33 1 1.2334 -5.1536 2.1089 34 1 -0.0176 -5.9927 1.1582 35 1 -1.6083 -6.0468 1.3121 36 1 -4.0153 -4.9494 2.3011 37 1 -4.0438 -4.8536 0.5240 38 1 -4.3556 -10.1852 3.5273 39 1 -4.8275 -11.3244 0.6434 40 1 -4.5969 -12.3203 2.1786 41 1 -6.6457 -11.2245 3.1965 42 1 -6.8757 -10.2289 1.6610 43 1 -0.4036 -1.8138 1.2034 44 1 0.9818 -2.4307 2.1399 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000851965192.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:25 Heat of formation + Delta-G solvation = 73.785445 kcal Electronic energy + Delta-G solvation = -26657.247188 eV Core-core repulsion = 22807.249312 eV Total energy + Delta-G solvation = -3849.997876 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -45.91188 -39.84212 -38.10784 -37.07419 -35.88181 -34.75725 -33.41586 -32.23909 -31.64268 -29.78337 -27.65921 -25.64975 -25.07287 -24.33150 -23.39392 -22.87303 -21.86038 -20.81964 -20.28400 -19.04408 -18.38631 -18.06216 -17.55319 -16.33241 -16.07980 -15.89687 -15.26895 -15.24074 -14.63797 -14.46161 -13.91074 -13.79705 -13.69919 -13.29588 -12.94887 -12.69095 -12.62956 -12.55382 -12.39797 -12.06576 -12.03534 -11.94174 -11.41368 -11.20898 -11.02453 -10.99429 -10.92630 -10.50668 -10.42928 -10.23586 -10.09911 -9.90353 -9.57148 -9.13298 -9.03654 -8.96652 -8.42224 -7.71846 -5.99141 -4.07766 0.71513 1.75897 2.40319 3.04346 3.20224 3.31845 3.33338 3.39387 3.41420 3.68699 3.76437 4.25491 4.28107 4.33605 4.44326 4.44706 4.82717 5.12788 5.18629 5.21553 5.22235 5.31129 5.34107 5.45121 5.46774 5.54857 5.59770 5.60529 5.67412 5.94819 6.12589 6.28635 6.43273 6.53755 6.62564 6.76762 6.96482 7.00770 7.28857 7.39536 7.71397 7.83795 7.90522 8.04067 8.39868 8.44275 8.95367 9.09537 9.57836 11.06142 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.029822 B = 0.002460 C = 0.002348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.687977 B =11378.774720 C =11923.760769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.063 3.937 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.521 4.521 8 H 0.058 0.942 9 C 0.039 3.961 10 H 0.029 0.971 11 C -0.110 4.110 12 C -0.134 4.134 13 C 0.115 3.885 14 N -0.618 5.618 15 C 0.708 3.292 16 O -0.577 6.577 17 N -0.755 5.755 18 C 0.236 3.764 19 C 0.175 3.825 20 N -0.460 5.460 21 C 0.198 3.802 22 C -0.080 4.080 23 C -0.158 4.158 24 C -0.156 4.156 25 N -0.380 5.380 26 O 0.088 5.912 27 C 0.128 3.872 28 H 0.264 0.736 29 H 0.051 0.949 30 H 0.050 0.950 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.058 0.942 35 H 0.395 0.605 36 H 0.114 0.886 37 H 0.106 0.894 38 H 0.137 0.863 39 H 0.104 0.896 40 H 0.108 0.892 41 H 0.109 0.891 42 H 0.098 0.902 43 H 0.124 0.876 44 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.301 -20.847 4.000 22.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.140 4.140 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.559 4.559 8 H 0.076 0.924 9 C 0.020 3.980 10 H 0.047 0.953 11 C -0.148 4.148 12 C -0.172 4.172 13 C -0.009 4.009 14 N -0.354 5.354 15 C 0.409 3.591 16 O -0.454 6.454 17 N -0.418 5.418 18 C 0.110 3.890 19 C -0.047 4.047 20 N -0.194 5.194 21 C -0.074 4.074 22 C -0.100 4.100 23 C -0.196 4.196 24 C -0.195 4.195 25 N -0.086 5.086 26 O 0.028 5.972 27 C 0.008 3.992 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.231 0.769 36 H 0.132 0.868 37 H 0.124 0.876 38 H 0.155 0.845 39 H 0.122 0.878 40 H 0.127 0.873 41 H 0.127 0.873 42 H 0.116 0.884 43 H 0.142 0.858 44 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -9.160 -20.702 3.983 22.985 hybrid contribution 0.823 0.562 -0.067 0.999 sum -8.337 -20.140 3.916 22.146 Atomic orbital electron populations 1.69885 1.05708 1.26863 1.49237 1.25056 0.94896 0.99255 0.94832 0.86592 0.79814 0.83519 0.78066 1.20721 1.21169 1.19934 1.21063 0.92897 0.90080 1.51908 0.92362 1.18994 0.92621 0.92230 0.94144 0.95284 1.21675 0.98557 0.93931 1.00594 1.22009 0.98632 0.99205 0.97394 1.21514 0.93373 0.87233 0.98815 1.47789 1.03164 1.09130 1.75298 1.15750 0.82745 0.82312 0.78276 1.90952 1.61603 1.36214 1.56611 1.45182 1.05083 1.08519 1.83055 1.19387 0.82462 0.80895 1.06254 1.28858 0.96925 0.98642 0.80245 1.71911 1.17784 1.00164 1.29586 1.24839 1.00153 0.95211 0.87177 1.20087 1.03194 0.86773 0.99914 1.23093 1.01256 0.94789 1.00483 1.23091 0.90136 1.02540 1.03692 1.74608 1.19635 0.97468 1.16843 1.85357 1.61600 1.15014 1.35184 1.22259 0.98423 0.80178 0.98335 0.92620 0.93009 0.93148 0.92263 0.92087 0.91889 0.92411 0.76859 0.86823 0.87648 0.84518 0.87767 0.87332 0.87251 0.88372 0.85778 0.94034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.30 11.39 55.43 0.63 -24.67 16 2 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 3 Si 0.89 21.06 29.54 -169.99 -5.02 16.03 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.52 -13.88 8.56 -34.44 -0.29 -14.18 16 8 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 9 C 0.04 0.95 2.25 -91.65 -0.21 0.74 16 10 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 11 C -0.11 -2.13 5.11 -26.53 -0.14 -2.26 16 12 C -0.13 -2.08 6.11 -26.45 -0.16 -2.25 16 13 C 0.11 1.72 6.42 -3.71 -0.02 1.70 16 14 N -0.62 -12.01 2.97 -178.50 -0.53 -12.54 16 15 C 0.71 13.66 8.30 -86.92 -0.72 12.94 16 16 O -0.58 -13.56 15.79 5.29 0.08 -13.47 16 17 N -0.76 -10.71 5.46 -66.42 -0.36 -11.07 16 18 C 0.24 2.83 6.30 -5.20 -0.03 2.80 16 19 C 0.17 2.03 7.88 -13.06 -0.10 1.93 16 20 N -0.46 -5.70 11.55 -9.87 -0.11 -5.81 16 21 C 0.20 2.28 7.74 -156.37 -1.21 1.07 16 22 C -0.08 -0.67 6.33 -91.77 -0.58 -1.25 16 23 C -0.16 -1.04 10.14 -26.73 -0.27 -1.32 16 24 C -0.16 -1.02 10.23 -26.73 -0.27 -1.29 16 25 N -0.38 -4.65 11.77 30.90 0.36 -4.29 16 26 O 0.09 1.06 11.31 18.10 0.20 1.27 16 27 C 0.13 3.04 5.39 -3.71 -0.02 3.02 16 28 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 29 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 33 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.06 0.70 5.56 -51.93 -0.29 0.41 16 35 H 0.39 4.84 5.92 -40.82 -0.24 4.60 16 36 H 0.11 1.35 8.14 -51.93 -0.42 0.93 16 37 H 0.11 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.14 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.10 0.80 7.91 -51.93 -0.41 0.39 16 40 H 0.11 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.11 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 43 H 0.12 3.45 5.15 -51.92 -0.27 3.19 16 44 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 363.62 15.07 5.48 5.48 Total: -1.00 -31.92 363.62 -9.64 -41.56 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -6.25 Total: 4.23 kcal Atomic # 6 Polarization: 7.41 SS G_CDS: -4.13 Total: 3.28 kcal Atomic # 7 Polarization: -58.36 SS G_CDS: -0.01 Total: -58.37 kcal Atomic # 8 Polarization: -12.49 SS G_CDS: 0.29 Total: -12.21 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.92 -9.64 -41.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000851965192.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.346 kcal (2) G-P(sol) polarization free energy of solvation -31.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.560 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds