Wall clock time and date at job start Tue Mar 31 2020 12:19:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 120.00258 * 2 1 4 4 H 1.48491 * 109.47616 * 270.00036 * 3 2 1 5 5 H 1.48504 * 109.46635 * 30.00143 * 3 2 1 6 6 H 1.48505 * 109.46782 * 149.99721 * 3 2 1 7 7 C 1.37880 * 119.99650 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99894 * 180.02562 * 7 2 1 9 9 C 1.50692 * 120.00066 * 0.02562 * 7 2 1 10 10 H 1.09006 * 109.52709 * 60.08536 * 9 7 2 11 11 C 1.53048 * 109.49892 * 180.15809 * 9 7 2 12 12 C 1.53350 * 109.60747 * 181.32556 * 11 9 7 13 13 C 1.53188 * 109.14976 * 298.71267 * 12 11 9 14 14 N 1.46925 * 108.89442 * 54.58200 * 13 12 11 15 15 C 1.34776 * 120.63544 * 126.29468 * 14 13 12 16 16 O 1.21588 * 120.00211 * 174.96212 * 15 14 13 17 17 N 1.34772 * 119.99868 * 354.96390 * 15 14 13 18 18 C 1.46502 * 120.00424 * 185.06863 * 17 15 14 19 19 C 1.50692 * 109.47120 * 180.02562 * 18 17 15 20 20 N 1.31133 * 126.55175 * 89.71964 * 19 18 17 21 21 C 1.34496 * 105.61255 * 179.91125 * 20 19 18 22 22 C 1.50707 * 126.28394 * 180.12239 * 21 20 19 23 23 C 1.52995 * 117.49634 * 188.86215 * 22 21 20 24 24 C 1.52999 * 117.49418 * 120.23997 * 22 21 20 25 25 N 1.29945 * 107.42796 * 0.34689 * 21 20 19 26 26 O 1.21301 * 110.24900 * 359.77797 * 25 21 20 27 27 C 1.46927 * 118.73541 * 306.31796 * 14 13 12 28 28 H 0.97005 * 119.99431 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.45680 * 301.33998 * 11 9 7 30 30 H 1.08998 * 109.45508 * 61.30842 * 11 9 7 31 31 H 1.09005 * 109.68228 * 178.75198 * 12 11 9 32 32 H 1.09002 * 109.47563 * 58.55539 * 12 11 9 33 33 H 1.09000 * 109.59213 * 294.72337 * 13 12 11 34 34 H 1.09003 * 109.58609 * 174.43706 * 13 12 11 35 35 H 0.97004 * 120.00168 * 5.07331 * 17 15 14 36 36 H 1.08998 * 109.47065 * 300.00332 * 18 17 15 37 37 H 1.09000 * 109.46606 * 59.99697 * 18 17 15 38 38 H 1.09000 * 115.55278 * 334.57169 * 22 21 20 39 39 H 1.08999 * 117.50390 * 359.97438 * 23 22 21 40 40 H 1.09001 * 117.49753 * 145.02447 * 23 22 21 41 41 H 1.09005 * 117.49711 * 214.97369 * 24 22 21 42 42 H 1.09001 * 117.50375 * 0.02562 * 24 22 21 43 43 H 1.09007 * 109.58513 * 173.39301 * 27 14 13 44 44 H 1.08994 * 109.59202 * 293.81641 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.3999 5 1 1.4466 2.6526 0.7001 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.6254 -2.5586 -0.8902 11 6 2.2449 -3.6629 0.0052 12 6 1.4810 -4.9922 -0.0282 13 6 0.6022 -5.0983 1.2220 14 7 -0.2566 -3.9089 1.3022 15 6 -1.5934 -4.0337 1.4202 16 8 -2.2847 -3.0459 1.5777 17 7 -2.1639 -5.2534 1.3637 18 6 -3.6233 -5.3810 1.3802 19 6 -4.0009 -6.8381 1.3084 20 7 -4.1747 -7.6507 2.3228 21 6 -4.5014 -8.8386 1.7832 22 6 -4.8053 -10.1074 2.5374 23 6 -4.9510 -11.3950 1.7240 24 6 -6.1868 -10.7340 2.3380 25 7 -4.5021 -8.6925 0.4920 26 8 -4.2171 -7.5505 0.1985 27 6 0.3696 -2.5807 1.2508 28 1 -0.4849 0.8401 -0.0004 29 1 2.8896 -3.5933 -0.8710 30 1 2.8534 -3.6171 0.9083 31 1 2.1881 -5.8216 -0.0473 32 1 0.8531 -5.0282 -0.9185 33 1 1.2334 -5.1536 2.1089 34 1 -0.0176 -5.9927 1.1582 35 1 -1.6083 -6.0468 1.3121 36 1 -4.0153 -4.9494 2.3011 37 1 -4.0438 -4.8536 0.5240 38 1 -4.3556 -10.1852 3.5273 39 1 -4.8275 -11.3244 0.6434 40 1 -4.5969 -12.3203 2.1786 41 1 -6.6457 -11.2245 3.1965 42 1 -6.8757 -10.2289 1.6610 43 1 -0.4036 -1.8138 1.2034 44 1 0.9818 -2.4307 2.1399 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000851965192.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:24 Heat of formation + Delta-G solvation = 52.161693 kcal Electronic energy + Delta-G solvation = -26658.184864 eV Core-core repulsion = 22807.249312 eV Total energy + Delta-G solvation = -3850.935552 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -46.82593 -41.34629 -38.72786 -38.60689 -36.93426 -35.94246 -35.21662 -33.61910 -32.97428 -31.48941 -28.84865 -26.94493 -26.42618 -25.81621 -24.35841 -23.43964 -23.36873 -21.82962 -21.65270 -20.50798 -19.38620 -19.26573 -18.69259 -18.20758 -17.34579 -16.77337 -16.66779 -16.48656 -16.14393 -15.47600 -15.25310 -15.21093 -15.14189 -14.54694 -14.40991 -14.17897 -13.93959 -13.58456 -13.45430 -13.43598 -13.15803 -12.86240 -12.67163 -12.52636 -12.31501 -12.24299 -12.20973 -12.03619 -11.82389 -11.61945 -11.56177 -11.28044 -10.95680 -10.86761 -10.78626 -10.48027 -10.36761 -9.30585 -8.07374 -6.23638 -0.22865 0.87463 1.39465 1.43809 1.44612 1.54820 1.85669 2.18873 2.31961 2.44868 2.69443 2.94840 2.98340 3.21963 3.55106 3.74698 3.92702 4.00543 4.02334 4.16627 4.27227 4.31444 4.39824 4.50965 4.62080 4.67053 4.72834 4.73029 4.81427 4.86046 4.89765 5.01180 5.12416 5.13406 5.18111 5.26872 5.30040 5.35221 5.59012 5.62620 5.87622 5.97418 6.12068 6.38679 6.88691 6.93172 7.00504 7.45833 7.57661 8.96054 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.029822 B = 0.002460 C = 0.002348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.687977 B =11378.774720 C =11923.760769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.010 3.990 3 Si 0.956 3.044 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.263 1.263 7 C -0.535 4.535 8 H 0.061 0.939 9 C 0.038 3.962 10 H -0.011 1.011 11 C -0.105 4.105 12 C -0.126 4.126 13 C 0.110 3.890 14 N -0.623 5.623 15 C 0.705 3.295 16 O -0.626 6.626 17 N -0.735 5.735 18 C 0.239 3.761 19 C 0.183 3.817 20 N -0.473 5.473 21 C 0.198 3.802 22 C -0.101 4.101 23 C -0.149 4.149 24 C -0.147 4.147 25 N -0.393 5.393 26 O 0.082 5.918 27 C 0.143 3.857 28 H 0.260 0.740 29 H 0.051 0.949 30 H 0.057 0.943 31 H 0.102 0.898 32 H 0.052 0.948 33 H 0.081 0.919 34 H 0.094 0.906 35 H 0.408 0.592 36 H 0.117 0.883 37 H 0.113 0.887 38 H 0.150 0.850 39 H 0.090 0.910 40 H 0.133 0.867 41 H 0.134 0.866 42 H 0.086 0.914 43 H 0.080 0.920 44 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.479 -23.535 4.719 25.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.189 4.189 3 Si 0.781 3.219 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.187 1.187 7 C -0.573 4.573 8 H 0.079 0.921 9 C 0.019 3.981 10 H 0.007 0.993 11 C -0.143 4.143 12 C -0.164 4.164 13 C -0.012 4.012 14 N -0.359 5.359 15 C 0.407 3.593 16 O -0.507 6.507 17 N -0.397 5.397 18 C 0.113 3.887 19 C -0.039 4.039 20 N -0.208 5.208 21 C -0.074 4.074 22 C -0.121 4.121 23 C -0.187 4.187 24 C -0.185 4.185 25 N -0.101 5.101 26 O 0.024 5.976 27 C 0.020 3.980 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.120 0.880 32 H 0.071 0.929 33 H 0.099 0.901 34 H 0.112 0.888 35 H 0.246 0.754 36 H 0.135 0.865 37 H 0.130 0.870 38 H 0.168 0.832 39 H 0.109 0.891 40 H 0.151 0.849 41 H 0.152 0.848 42 H 0.105 0.895 43 H 0.098 0.902 44 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -8.316 -23.459 4.685 25.327 hybrid contribution 0.531 1.325 -0.297 1.458 sum -7.786 -22.134 4.388 23.870 Atomic orbital electron populations 1.70074 1.07293 1.27243 1.50569 1.25868 0.95573 1.02785 0.94683 0.85592 0.78808 0.79328 0.78155 1.20237 1.21380 1.18728 1.21502 0.93263 0.91484 1.51078 0.92052 1.18920 0.93099 0.93638 0.92463 0.99329 1.21563 0.97690 0.94119 1.00916 1.21962 0.98979 0.98233 0.97223 1.21844 0.93568 0.86445 0.99384 1.47659 1.03847 1.09082 1.75304 1.15867 0.82523 0.83001 0.77945 1.90919 1.62734 1.38321 1.58698 1.44866 1.06165 1.07142 1.81574 1.19416 0.80992 0.81426 1.06829 1.28599 0.96834 0.98165 0.80257 1.71932 1.18248 1.00705 1.29880 1.25433 0.98993 0.95898 0.87087 1.20375 1.05006 0.86174 1.00547 1.23167 1.00977 0.94838 0.99685 1.23188 0.89387 1.01743 1.04209 1.74616 1.20575 0.97461 1.17425 1.85346 1.61829 1.15148 1.35246 1.21644 0.96954 0.81630 0.97740 0.93104 0.93025 0.92435 0.87960 0.92948 0.90117 0.88815 0.75373 0.86546 0.86952 0.83242 0.89133 0.84878 0.84816 0.89511 0.90217 0.94603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.87 11.39 21.45 0.24 -54.62 16 2 C 0.01 0.58 5.30 84.66 0.45 1.03 16 3 Si 0.96 43.95 29.54 68.60 2.03 45.98 16 4 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 5 H -0.29 -13.23 7.11 99.48 0.71 -12.53 16 6 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 7 C -0.53 -29.06 8.56 25.60 0.22 -28.84 16 8 H 0.06 3.21 7.74 -2.91 -0.02 3.19 16 9 C 0.04 1.89 2.25 -11.46 -0.03 1.86 16 10 H -0.01 -0.65 8.14 -2.38 -0.02 -0.67 16 11 C -0.11 -3.95 5.11 30.73 0.16 -3.79 16 12 C -0.13 -3.56 6.11 30.77 0.19 -3.37 16 13 C 0.11 2.99 6.42 86.36 0.55 3.55 16 14 N -0.62 -24.12 2.97 -836.92 -2.49 -26.61 16 15 C 0.71 27.38 8.30 179.06 1.49 28.86 16 16 O -0.63 -30.54 15.79 -3.99 -0.06 -30.60 16 17 N -0.73 -20.02 5.46 -482.31 -2.63 -22.65 16 18 C 0.24 5.57 6.30 85.63 0.54 6.11 16 19 C 0.18 4.05 7.88 88.38 0.70 4.75 16 20 N -0.47 -11.08 11.55 -303.20 -3.50 -14.59 16 21 C 0.20 4.27 7.74 138.46 1.07 5.34 16 22 C -0.10 -1.48 6.33 -11.54 -0.07 -1.55 16 23 C -0.15 -1.62 10.14 30.59 0.31 -1.31 16 24 C -0.15 -1.58 10.23 30.59 0.31 -1.27 16 25 N -0.39 -9.24 11.77 -60.31 -0.71 -9.95 16 26 O 0.08 1.90 11.31 74.81 0.85 2.75 16 27 C 0.14 6.99 5.39 86.36 0.47 7.46 16 28 H 0.26 15.07 8.31 -92.70 -0.77 14.30 16 29 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 31 H 0.10 2.11 8.14 -2.38 -0.02 2.09 16 32 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.09 1.89 5.56 -2.39 -0.01 1.88 16 35 H 0.41 8.99 5.92 -92.70 -0.55 8.45 16 36 H 0.12 2.73 8.14 -2.39 -0.02 2.71 16 37 H 0.11 2.52 8.14 -2.39 -0.02 2.50 16 38 H 0.15 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.09 1.26 7.91 -2.39 -0.02 1.24 16 40 H 0.13 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.13 0.78 8.14 -2.38 -0.02 0.76 16 42 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 43 H 0.08 4.68 5.15 -2.38 -0.01 4.67 16 44 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -73.14 363.62 0.55 -72.59 By element: Atomic # 1 Polarization: 18.38 SS G_CDS: 0.48 Total: 18.86 kcal Atomic # 6 Polarization: 12.48 SS G_CDS: 6.35 Total: 18.83 kcal Atomic # 7 Polarization: -119.32 SS G_CDS: -9.09 Total: -128.41 kcal Atomic # 8 Polarization: -28.63 SS G_CDS: 0.78 Total: -27.85 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Total: -73.14 0.55 -72.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000851965192.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.748 kcal (2) G-P(sol) polarization free energy of solvation -73.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.587 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds