Wall clock time and date at job start Tue Mar 31 2020 12:18:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 119.99787 * 2 1 4 4 H 1.48504 * 109.47052 * 269.99279 * 3 2 1 5 5 H 1.48495 * 109.47307 * 29.99218 * 3 2 1 6 6 H 1.48500 * 109.47143 * 149.99726 * 3 2 1 7 7 C 1.37876 * 120.00362 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47060 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.46886 * 180.02562 * 11 10 9 13 13 C 1.50697 * 109.47291 * 179.97438 * 12 11 10 14 14 O 1.20831 * 119.99712 * 0.02562 * 13 12 11 15 15 O 1.34230 * 120.00299 * 179.97438 * 13 12 11 16 16 C 1.45205 * 117.00012 * 179.97438 * 15 13 12 17 17 H 1.09000 * 112.84915 * 18.80960 * 16 15 13 18 18 C 1.53774 * 113.61143 * 150.00220 * 16 15 13 19 19 C 1.53780 * 87.08259 * 139.98598 * 18 16 15 20 20 H 1.08996 * 113.61690 * 89.11757 * 19 18 16 21 21 C 1.50704 * 113.61464 * 220.02078 * 19 18 16 22 22 C 1.38244 * 119.97136 * 59.72360 * 21 19 18 23 23 C 1.38205 * 120.02145 * 179.72730 * 22 21 19 24 24 C 1.38462 * 119.97173 * 0.56676 * 23 22 21 25 25 F 1.35102 * 120.02328 * 179.68386 * 24 23 22 26 26 C 1.38455 * 119.94877 * 359.70359 * 24 23 22 27 27 C 1.38194 * 119.97637 * 0.02562 * 26 24 23 28 28 C 1.53774 * 113.61599 * 247.50208 * 16 15 13 29 29 H 0.96994 * 119.99814 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 31 31 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 32 32 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 33 33 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 34 34 H 1.09001 * 109.47194 * 299.99650 * 11 10 9 35 35 H 1.08992 * 109.47399 * 59.99823 * 11 10 9 36 36 H 1.09001 * 109.47109 * 299.99380 * 12 11 10 37 37 H 1.09002 * 109.47508 * 59.99571 * 12 11 10 38 38 H 1.09010 * 113.61878 * 254.53336 * 18 16 15 39 39 H 1.09004 * 113.61870 * 25.34710 * 18 16 15 40 40 H 1.07996 * 119.99179 * 359.97376 * 22 21 19 41 41 H 1.08001 * 120.01188 * 180.24938 * 23 22 21 42 42 H 1.08000 * 120.01251 * 179.97438 * 26 24 23 43 43 H 1.08001 * 119.98698 * 179.97438 * 27 26 24 44 44 H 1.09006 * 113.61367 * 334.56556 * 28 16 15 45 45 H 1.08994 * 113.61746 * 105.46968 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4465 2.6528 0.6998 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 6 4.0217 -2.6365 0.0023 11 6 5.5517 -2.6364 0.0035 12 6 6.0617 -4.0789 0.0040 13 6 7.5686 -4.0789 0.0046 14 8 8.1728 -3.0324 0.0051 15 8 8.2398 -5.2413 0.0057 16 6 9.6899 -5.1653 0.0056 17 1 10.0628 -4.1933 0.3286 18 6 10.3689 -6.3510 0.7111 19 6 11.4151 -6.3207 -0.4155 20 1 12.2606 -5.6647 -0.2087 21 6 11.8358 -7.6894 -0.8856 22 6 10.8960 -8.5605 -1.4043 23 6 11.2815 -9.8138 -1.8409 24 6 12.6076 -10.2010 -1.7479 25 9 12.9846 -11.4283 -2.1685 26 6 13.5470 -9.3297 -1.2231 27 6 13.1600 -8.0749 -0.7923 28 6 10.3333 -5.6726 -1.2957 29 1 -0.4849 0.8400 -0.0004 30 1 3.8746 -0.6799 0.8911 31 1 3.8752 -0.6803 -0.8888 32 1 3.6587 -3.1509 -0.8875 33 1 3.6580 -3.1497 0.8925 34 1 5.9157 -2.1230 -0.8865 35 1 5.9143 -2.1221 0.8934 36 1 5.6977 -4.5926 0.8938 37 1 5.6990 -4.5929 -0.8862 38 1 10.7754 -6.1014 1.6913 39 1 9.7634 -7.2573 0.7225 40 1 9.8608 -8.2602 -1.4719 41 1 10.5479 -10.4928 -2.2498 42 1 14.5815 -9.6308 -1.1497 43 1 13.8925 -7.3952 -0.3825 44 1 9.7187 -6.3939 -1.8344 45 1 10.7110 -4.8753 -1.9357 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000870523265.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:24 Heat of formation + Delta-G solvation = -111.550529 kcal Electronic energy + Delta-G solvation = -24837.224158 eV Core-core repulsion = 20926.976798 eV Total energy + Delta-G solvation = -3910.247360 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.31532 -41.04660 -39.98451 -38.14682 -36.02038 -35.11351 -32.64887 -31.66897 -31.11022 -30.28840 -26.61888 -26.25174 -25.28964 -23.65447 -22.92439 -21.80716 -20.49818 -20.10070 -19.90013 -18.28280 -17.80573 -16.85129 -16.65078 -16.59013 -16.46321 -16.01784 -15.71138 -15.41785 -14.80678 -14.68538 -14.20363 -14.05452 -13.72854 -13.63397 -13.38736 -12.95559 -12.90786 -12.68652 -12.39954 -12.35431 -12.18306 -11.91859 -11.77539 -11.54322 -11.30846 -11.17897 -11.03081 -10.81490 -10.61624 -10.50116 -10.41207 -9.89186 -9.69616 -9.61104 -9.54564 -9.15297 -8.99523 -8.51447 -6.02398 -4.00207 0.61319 0.72817 2.19917 2.59350 3.02484 3.33286 3.40575 3.45696 3.78940 3.94681 4.07529 4.14941 4.29049 4.37012 4.40650 4.47904 4.53381 4.67775 4.74788 4.86699 5.06726 5.14117 5.18328 5.24163 5.27953 5.32257 5.36725 5.45478 5.49421 5.52855 5.59486 5.63849 5.73894 5.81075 5.93309 6.03638 6.06458 6.30639 6.38719 6.42606 6.59670 6.73941 6.93725 7.33727 7.46455 7.74564 7.82397 8.55983 9.02520 9.60675 11.11043 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.036782 B = 0.001610 C = 0.001566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.049304 B =17386.357714 C =17880.745559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.065 3.935 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.521 4.521 8 H 0.071 0.929 9 C -0.015 4.015 10 C -0.103 4.103 11 C -0.111 4.111 12 C -0.113 4.113 13 C 0.460 3.540 14 O -0.508 6.508 15 O -0.348 6.348 16 C 0.057 3.943 17 H 0.113 0.887 18 C -0.123 4.123 19 C -0.071 4.071 20 H 0.106 0.894 21 C -0.077 4.077 22 C -0.086 4.086 23 C -0.150 4.150 24 C 0.092 3.908 25 F -0.141 7.141 26 C -0.152 4.152 27 C -0.086 4.086 28 C -0.142 4.142 29 H 0.262 0.738 30 H 0.016 0.984 31 H 0.012 0.988 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.105 0.895 37 H 0.104 0.896 38 H 0.081 0.919 39 H 0.098 0.902 40 H 0.136 0.864 41 H 0.136 0.864 42 H 0.135 0.865 43 H 0.133 0.867 44 H 0.098 0.902 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.361 -20.120 -1.494 35.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.136 4.136 3 Si 0.707 3.293 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.559 4.559 8 H 0.090 0.910 9 C -0.053 4.053 10 C -0.140 4.140 11 C -0.149 4.149 12 C -0.150 4.150 13 C 0.303 3.697 14 O -0.395 6.395 15 O -0.265 6.265 16 C 0.002 3.998 17 H 0.131 0.869 18 C -0.160 4.160 19 C -0.089 4.089 20 H 0.124 0.876 21 C -0.078 4.078 22 C -0.104 4.104 23 C -0.168 4.168 24 C 0.073 3.927 25 F -0.120 7.120 26 C -0.171 4.171 27 C -0.104 4.104 28 C -0.179 4.179 29 H 0.072 0.928 30 H 0.034 0.966 31 H 0.030 0.970 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.123 0.877 37 H 0.123 0.877 38 H 0.100 0.900 39 H 0.116 0.884 40 H 0.154 0.846 41 H 0.154 0.846 42 H 0.153 0.847 43 H 0.151 0.849 44 H 0.116 0.884 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 29.433 -19.740 -1.505 35.472 hybrid contribution 0.553 0.721 -0.133 0.918 sum 29.986 -19.019 -1.638 35.546 Atomic orbital electron populations 1.69918 1.06302 1.26847 1.51339 1.25040 0.94729 0.99203 0.94585 0.86777 0.80408 0.83591 0.78525 1.20323 1.21424 1.18947 1.21174 0.89611 0.94438 1.50660 0.91044 1.19575 0.96997 0.92334 0.96355 1.21477 0.91110 1.00150 1.01275 1.21601 0.97786 0.92350 1.03144 1.21590 0.85802 1.01964 1.05691 1.24213 0.92289 0.81576 0.71576 1.90649 1.70566 1.32968 1.45292 1.86638 1.21047 1.35084 1.83778 1.24398 0.77107 1.00468 0.97865 0.86942 1.23354 0.95812 0.98732 0.98087 1.21261 0.97199 0.93399 0.97065 0.87568 1.19673 0.93347 0.95513 0.99232 1.20968 1.00196 0.92370 0.96849 1.21182 0.94603 0.98080 1.02971 1.17768 0.93643 0.81138 1.00137 1.91508 1.92019 1.40574 1.87893 1.21151 0.99812 0.94465 1.01692 1.20928 0.95675 0.95391 0.98401 1.23590 0.96524 1.01040 0.96748 0.92789 0.96590 0.97019 0.92587 0.92563 0.91571 0.91556 0.87725 0.87745 0.90031 0.88358 0.84596 0.84578 0.84724 0.84913 0.88392 0.90163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.13 13.96 55.43 0.77 -27.35 16 2 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 3 Si 0.88 22.08 27.47 -169.99 -4.67 17.41 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.26 -6.43 6.54 56.52 0.37 -6.06 16 7 C -0.52 -14.96 9.66 -34.44 -0.33 -15.30 16 8 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 9 C -0.02 -0.37 4.04 -27.89 -0.11 -0.48 16 10 C -0.10 -1.95 5.15 -26.73 -0.14 -2.08 16 11 C -0.11 -1.76 4.50 -26.73 -0.12 -1.89 16 12 C -0.11 -1.38 5.81 -27.88 -0.16 -1.54 16 13 C 0.46 6.02 7.96 36.00 0.29 6.31 16 14 O -0.51 -8.11 15.16 -18.75 -0.28 -8.40 16 15 O -0.35 -3.85 10.24 -39.26 -0.40 -4.26 16 16 C 0.06 0.50 4.25 -25.93 -0.11 0.39 16 17 H 0.11 1.10 7.07 -51.93 -0.37 0.73 16 18 C -0.12 -0.79 7.38 -25.92 -0.19 -0.98 16 19 C -0.07 -0.40 3.98 -90.95 -0.36 -0.76 16 20 H 0.11 0.47 8.09 -51.93 -0.42 0.05 16 21 C -0.08 -0.47 5.29 -104.62 -0.55 -1.02 16 22 C -0.09 -0.54 8.59 -39.59 -0.34 -0.88 16 23 C -0.15 -1.01 10.03 -39.51 -0.40 -1.40 16 24 C 0.09 0.70 7.30 -39.42 -0.29 0.41 16 25 F -0.14 -1.22 17.27 2.25 0.04 -1.19 16 26 C -0.15 -0.95 10.03 -39.52 -0.40 -1.35 16 27 C -0.09 -0.48 9.71 -39.60 -0.38 -0.86 16 28 C -0.14 -1.00 7.30 -25.92 -0.19 -1.19 16 29 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 30 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16 31 H 0.01 0.28 7.57 -51.93 -0.39 -0.12 16 32 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.07 1.09 8.10 -51.93 -0.42 0.67 16 35 H 0.07 1.10 8.10 -51.93 -0.42 0.68 16 36 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.10 1.11 8.14 -51.93 -0.42 0.68 16 38 H 0.08 0.46 8.14 -51.92 -0.42 0.04 16 39 H 0.10 0.64 7.72 -51.93 -0.40 0.24 16 40 H 0.14 0.73 6.67 -52.49 -0.35 0.38 16 41 H 0.14 0.73 8.06 -52.49 -0.42 0.31 16 42 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 43 H 0.13 0.47 8.05 -52.49 -0.42 0.04 16 44 H 0.10 0.67 6.32 -51.93 -0.33 0.34 16 45 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 LS Contribution 377.46 15.07 5.69 5.69 Total: -1.00 -33.17 377.46 -9.61 -42.78 By element: Atomic # 1 Polarization: 2.99 SS G_CDS: -6.87 Total: -3.87 kcal Atomic # 6 Polarization: -16.92 SS G_CDS: -3.89 Total: -20.81 kcal Atomic # 7 Polarization: -28.13 SS G_CDS: 0.77 Total: -27.35 kcal Atomic # 8 Polarization: -11.97 SS G_CDS: -0.69 Total: -12.65 kcal Atomic # 9 Polarization: -1.22 SS G_CDS: 0.04 Total: -1.19 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -4.67 Total: 17.41 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.17 -9.61 -42.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870523265.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.772 kcal (2) G-P(sol) polarization free energy of solvation -33.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds