Wall clock time and date at job start Tue Mar 31 2020 12:18:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 119.99787 * 2 1 4 4 H 1.48504 * 109.47052 * 269.99279 * 3 2 1 5 5 H 1.48495 * 109.47307 * 29.99218 * 3 2 1 6 6 H 1.48500 * 109.47143 * 149.99726 * 3 2 1 7 7 C 1.37876 * 120.00362 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47060 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.46886 * 180.02562 * 11 10 9 13 13 C 1.50697 * 109.47291 * 179.97438 * 12 11 10 14 14 O 1.20831 * 119.99712 * 0.02562 * 13 12 11 15 15 O 1.34230 * 120.00299 * 179.97438 * 13 12 11 16 16 C 1.45205 * 117.00012 * 179.97438 * 15 13 12 17 17 H 1.09000 * 112.84915 * 18.80960 * 16 15 13 18 18 C 1.53774 * 113.61143 * 150.00220 * 16 15 13 19 19 C 1.53780 * 87.08259 * 139.98598 * 18 16 15 20 20 H 1.08996 * 113.61690 * 89.11757 * 19 18 16 21 21 C 1.50704 * 113.61464 * 220.02078 * 19 18 16 22 22 C 1.38244 * 119.97136 * 59.72360 * 21 19 18 23 23 C 1.38205 * 120.02145 * 179.72730 * 22 21 19 24 24 C 1.38462 * 119.97173 * 0.56676 * 23 22 21 25 25 F 1.35102 * 120.02328 * 179.68386 * 24 23 22 26 26 C 1.38455 * 119.94877 * 359.70359 * 24 23 22 27 27 C 1.38194 * 119.97637 * 0.02562 * 26 24 23 28 28 C 1.53774 * 113.61599 * 247.50208 * 16 15 13 29 29 H 0.96994 * 119.99814 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 31 31 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 32 32 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 33 33 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 34 34 H 1.09001 * 109.47194 * 299.99650 * 11 10 9 35 35 H 1.08992 * 109.47399 * 59.99823 * 11 10 9 36 36 H 1.09001 * 109.47109 * 299.99380 * 12 11 10 37 37 H 1.09002 * 109.47508 * 59.99571 * 12 11 10 38 38 H 1.09010 * 113.61878 * 254.53336 * 18 16 15 39 39 H 1.09004 * 113.61870 * 25.34710 * 18 16 15 40 40 H 1.07996 * 119.99179 * 359.97376 * 22 21 19 41 41 H 1.08001 * 120.01188 * 180.24938 * 23 22 21 42 42 H 1.08000 * 120.01251 * 179.97438 * 26 24 23 43 43 H 1.08001 * 119.98698 * 179.97438 * 27 26 24 44 44 H 1.09006 * 113.61367 * 334.56556 * 28 16 15 45 45 H 1.08994 * 113.61746 * 105.46968 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4465 2.6528 0.6998 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 6 4.0217 -2.6365 0.0023 11 6 5.5517 -2.6364 0.0035 12 6 6.0617 -4.0789 0.0040 13 6 7.5686 -4.0789 0.0046 14 8 8.1728 -3.0324 0.0051 15 8 8.2398 -5.2413 0.0057 16 6 9.6899 -5.1653 0.0056 17 1 10.0628 -4.1933 0.3286 18 6 10.3689 -6.3510 0.7111 19 6 11.4151 -6.3207 -0.4155 20 1 12.2606 -5.6647 -0.2087 21 6 11.8358 -7.6894 -0.8856 22 6 10.8960 -8.5605 -1.4043 23 6 11.2815 -9.8138 -1.8409 24 6 12.6076 -10.2010 -1.7479 25 9 12.9846 -11.4283 -2.1685 26 6 13.5470 -9.3297 -1.2231 27 6 13.1600 -8.0749 -0.7923 28 6 10.3333 -5.6726 -1.2957 29 1 -0.4849 0.8400 -0.0004 30 1 3.8746 -0.6799 0.8911 31 1 3.8752 -0.6803 -0.8888 32 1 3.6587 -3.1509 -0.8875 33 1 3.6580 -3.1497 0.8925 34 1 5.9157 -2.1230 -0.8865 35 1 5.9143 -2.1221 0.8934 36 1 5.6977 -4.5926 0.8938 37 1 5.6990 -4.5929 -0.8862 38 1 10.7754 -6.1014 1.6913 39 1 9.7634 -7.2573 0.7225 40 1 9.8608 -8.2602 -1.4719 41 1 10.5479 -10.4928 -2.2498 42 1 14.5815 -9.6308 -1.1497 43 1 13.8925 -7.3952 -0.3825 44 1 9.7187 -6.3939 -1.8344 45 1 10.7110 -4.8753 -1.9357 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000870523265.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:23 Heat of formation + Delta-G solvation = -127.238170 kcal Electronic energy + Delta-G solvation = -24837.904425 eV Core-core repulsion = 20926.976798 eV Total energy + Delta-G solvation = -3910.927627 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.89612 -41.81359 -40.66864 -38.79400 -36.98351 -36.54271 -34.63421 -32.13134 -32.07565 -31.48132 -28.10753 -26.77762 -26.11151 -24.30645 -24.03847 -22.66526 -21.82397 -21.41894 -20.44015 -18.99648 -18.79445 -18.54803 -17.51463 -17.45825 -17.25450 -16.59830 -16.39468 -16.24125 -16.13580 -15.91239 -15.30095 -14.78025 -14.55649 -14.45335 -14.23973 -14.12131 -13.94104 -13.78110 -13.52105 -13.46062 -13.30830 -12.86774 -12.84171 -12.47193 -12.35769 -12.15249 -12.11582 -11.82176 -11.75273 -11.66929 -11.56830 -11.36289 -11.29632 -11.18060 -11.10574 -10.75076 -10.05495 -9.49140 -8.28638 -6.31975 0.12333 0.28646 1.21027 1.35873 1.37486 1.49919 1.73476 2.36773 2.55723 3.06923 3.30065 3.40263 3.53671 3.60105 3.79861 3.82318 3.87882 3.97292 3.98048 4.05766 4.11045 4.31249 4.36393 4.46582 4.60792 4.61892 4.73576 4.74652 4.76411 4.82427 4.89725 4.95403 5.03200 5.04978 5.11016 5.14147 5.18635 5.20307 5.26440 5.30446 5.52812 5.60284 5.65659 5.66882 5.69674 5.93163 6.30447 6.76298 6.78743 7.32945 8.87947 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.036782 B = 0.001610 C = 0.001566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.049304 B =17386.357714 C =17880.745559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.003 3.997 3 Si 0.948 3.052 4 H -0.267 1.267 5 H -0.283 1.283 6 H -0.250 1.250 7 C -0.532 4.532 8 H 0.036 0.964 9 C -0.017 4.017 10 C -0.095 4.095 11 C -0.101 4.101 12 C -0.108 4.108 13 C 0.465 3.535 14 O -0.542 6.542 15 O -0.346 6.346 16 C 0.041 3.959 17 H 0.102 0.898 18 C -0.115 4.115 19 C -0.058 4.058 20 H 0.123 0.877 21 C -0.081 4.081 22 C -0.091 4.091 23 C -0.158 4.158 24 C 0.069 3.931 25 F -0.153 7.153 26 C -0.156 4.156 27 C -0.085 4.085 28 C -0.141 4.141 29 H 0.266 0.734 30 H 0.016 0.984 31 H 0.015 0.985 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.125 0.875 37 H 0.126 0.874 38 H 0.092 0.908 39 H 0.099 0.901 40 H 0.144 0.856 41 H 0.143 0.857 42 H 0.149 0.851 43 H 0.157 0.843 44 H 0.100 0.900 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.658 -20.120 -1.266 37.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.193 4.193 3 Si 0.772 3.228 4 H -0.193 1.193 5 H -0.209 1.209 6 H -0.174 1.174 7 C -0.570 4.570 8 H 0.055 0.945 9 C -0.054 4.054 10 C -0.133 4.133 11 C -0.139 4.139 12 C -0.145 4.145 13 C 0.310 3.690 14 O -0.432 6.432 15 O -0.262 6.262 16 C -0.014 4.014 17 H 0.120 0.880 18 C -0.152 4.152 19 C -0.076 4.076 20 H 0.141 0.859 21 C -0.081 4.081 22 C -0.109 4.109 23 C -0.177 4.177 24 C 0.050 3.950 25 F -0.132 7.132 26 C -0.175 4.175 27 C -0.103 4.103 28 C -0.178 4.178 29 H 0.074 0.926 30 H 0.034 0.966 31 H 0.033 0.967 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.143 0.857 37 H 0.144 0.856 38 H 0.110 0.890 39 H 0.118 0.882 40 H 0.161 0.839 41 H 0.161 0.839 42 H 0.166 0.834 43 H 0.174 0.826 44 H 0.118 0.882 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 31.746 -19.776 -1.277 37.423 hybrid contribution -0.195 0.633 -0.207 0.694 sum 31.551 -19.143 -1.484 36.934 Atomic orbital electron populations 1.70065 1.08188 1.28069 1.52872 1.26005 0.95604 1.03441 0.94271 0.85684 0.79439 0.78534 0.79159 1.19252 1.20872 1.17372 1.21563 0.92229 0.93208 1.50016 0.94530 1.19575 0.93803 0.95790 0.96280 1.21336 0.93366 0.96914 1.01644 1.21378 0.95195 0.94876 1.02452 1.21500 0.85486 0.99734 1.07771 1.24247 0.92541 0.81523 0.70684 1.90641 1.71289 1.34176 1.47117 1.86620 1.22450 1.33912 1.83243 1.24710 0.75787 1.01029 0.99826 0.88033 1.23353 0.95572 0.97523 0.98773 1.21225 0.97180 0.93293 0.95919 0.85903 1.19781 0.93626 0.95546 0.99133 1.21105 1.00750 0.92239 0.96820 1.21336 0.94624 0.98568 1.03131 1.18069 0.94449 0.81155 1.01306 1.91473 1.92156 1.41361 1.88207 1.21383 1.00355 0.94545 1.01206 1.21205 0.95973 0.95380 0.97711 1.23610 0.96872 1.01103 0.96211 0.92553 0.96593 0.96693 0.92242 0.92268 0.92281 0.92333 0.85662 0.85643 0.88968 0.88248 0.83867 0.83878 0.83357 0.82560 0.88163 0.90261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.19 13.96 21.45 0.30 -59.89 16 2 C 0.00 0.20 5.47 84.65 0.46 0.66 16 3 Si 0.95 45.21 27.47 68.60 1.88 47.09 16 4 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 5 H -0.28 -13.16 7.11 99.48 0.71 -12.46 16 6 H -0.25 -11.23 6.54 99.48 0.65 -10.58 16 7 C -0.53 -30.96 9.66 25.60 0.25 -30.71 16 8 H 0.04 2.31 7.99 -2.91 -0.02 2.28 16 9 C -0.02 -0.81 4.04 29.85 0.12 -0.68 16 10 C -0.10 -3.50 5.15 30.59 0.16 -3.34 16 11 C -0.10 -3.05 4.50 30.59 0.14 -2.91 16 12 C -0.11 -2.39 5.81 29.85 0.17 -2.21 16 13 C 0.46 11.40 7.96 71.23 0.57 11.97 16 14 O -0.54 -16.81 15.16 21.95 0.33 -16.48 16 15 O -0.35 -7.02 10.24 -51.41 -0.53 -7.54 16 16 C 0.04 0.66 4.25 31.12 0.13 0.79 16 17 H 0.10 1.88 7.07 -2.39 -0.02 1.86 16 18 C -0.11 -1.22 7.38 31.12 0.23 -0.99 16 19 C -0.06 -0.51 3.98 -11.01 -0.04 -0.55 16 20 H 0.12 0.70 8.09 -2.39 -0.02 0.68 16 21 C -0.08 -0.80 5.29 -19.86 -0.11 -0.91 16 22 C -0.09 -1.01 8.59 22.26 0.19 -0.82 16 23 C -0.16 -2.00 10.03 22.32 0.22 -1.78 16 24 C 0.07 1.00 7.30 22.38 0.16 1.16 16 25 F -0.15 -2.64 17.27 44.97 0.78 -1.87 16 26 C -0.16 -1.72 10.03 22.31 0.22 -1.49 16 27 C -0.08 -0.74 9.71 22.26 0.22 -0.53 16 28 C -0.14 -1.72 7.30 31.12 0.23 -1.50 16 29 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 30 H 0.02 0.74 7.20 -2.39 -0.02 0.73 16 31 H 0.01 0.69 7.57 -2.39 -0.02 0.67 16 32 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 33 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 34 H 0.06 1.86 8.10 -2.39 -0.02 1.84 16 35 H 0.06 1.85 8.10 -2.39 -0.02 1.83 16 36 H 0.13 2.30 8.14 -2.39 -0.02 2.28 16 37 H 0.13 2.29 8.14 -2.39 -0.02 2.27 16 38 H 0.09 0.80 8.14 -2.38 -0.02 0.78 16 39 H 0.10 1.06 7.72 -2.39 -0.02 1.04 16 40 H 0.14 1.30 6.67 -2.91 -0.02 1.28 16 41 H 0.14 1.47 8.06 -2.91 -0.02 1.45 16 42 H 0.15 1.12 8.06 -2.91 -0.02 1.10 16 43 H 0.16 0.57 8.05 -2.91 -0.02 0.55 16 44 H 0.10 1.19 6.32 -2.38 -0.02 1.17 16 45 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 Total: -1.00 -72.21 377.46 7.01 -65.19 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: 0.92 Total: 7.32 kcal Atomic # 6 Polarization: -37.15 SS G_CDS: 3.33 Total: -33.82 kcal Atomic # 7 Polarization: -60.19 SS G_CDS: 0.30 Total: -59.89 kcal Atomic # 8 Polarization: -23.83 SS G_CDS: -0.19 Total: -24.02 kcal Atomic # 9 Polarization: -2.64 SS G_CDS: 0.78 Total: -1.87 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 1.88 Total: 47.09 kcal Total: -72.21 7.01 -65.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870523265.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.044 kcal (2) G-P(sol) polarization free energy of solvation -72.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds