Wall clock time and date at job start Tue Mar 31 2020 12:41:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38070 * 119.56883 * 2 1 4 4 C 1.38842 * 119.32074 * 180.02562 * 3 2 1 5 5 C 1.38339 * 118.50975 * 359.97438 * 4 3 2 6 6 N 1.35499 * 120.44882 * 179.97438 * 5 4 3 7 7 O 1.21796 * 120.00392 * 7.23714 * 6 5 4 8 8 O 1.21800 * 119.99676 * 187.23308 * 6 5 4 9 9 C 1.39089 * 119.09734 * 0.02562 * 5 4 3 10 10 N 1.39006 * 119.70446 * 179.97438 * 9 5 4 11 11 C 1.46897 * 111.00184 * 123.12204 * 10 9 5 12 12 C 1.53238 * 109.34546 * 187.25440 * 11 10 9 13 13 H 1.08996 * 109.63223 * 186.46416 * 12 11 10 14 14 C 1.52997 * 109.78925 * 65.97298 * 12 11 10 15 15 N 1.47083 * 108.51746 * 306.16973 * 12 11 10 16 16 C 1.36936 * 120.88360 * 231.18108 * 15 12 11 17 17 H 1.07994 * 120.00188 * 147.66803 * 16 15 12 18 18 C 1.38807 * 119.99700 * 327.94750 * 16 15 12 19 19 N 1.31618 * 120.00362 * 347.86241 * 18 16 15 20 20 Si 1.86803 * 120.00034 * 167.86901 * 18 16 15 21 21 H 1.48504 * 109.47234 * 89.99547 * 20 18 16 22 22 H 1.48494 * 109.47312 * 209.99847 * 20 18 16 23 23 H 1.48497 * 109.46913 * 329.99919 * 20 18 16 24 24 C 1.47080 * 118.23728 * 51.45853 * 15 12 11 25 25 H 1.09006 * 109.63206 * 68.24768 * 24 15 12 26 26 C 1.52995 * 109.63058 * 188.82802 * 24 15 12 27 27 C 1.46900 * 111.00153 * 247.42237 * 10 9 5 28 28 N 1.31935 * 119.57248 * 180.27552 * 2 1 3 29 29 H 1.09003 * 109.47060 * 89.99760 * 1 2 3 30 30 H 1.08998 * 109.47150 * 210.00248 * 1 2 3 31 31 H 1.09004 * 109.46730 * 330.00012 * 1 2 3 32 32 H 1.07995 * 120.33953 * 359.97438 * 3 2 1 33 33 H 1.08004 * 120.74068 * 179.97438 * 4 3 2 34 34 H 1.09008 * 109.49525 * 67.29396 * 11 10 9 35 35 H 1.09002 * 109.51945 * 307.23094 * 11 10 9 36 36 H 1.09005 * 109.46994 * 300.88028 * 14 12 11 37 37 H 1.09001 * 109.47126 * 60.87603 * 14 12 11 38 38 H 1.08995 * 109.47382 * 180.88139 * 14 12 11 39 39 H 0.97006 * 120.00581 * 185.01889 * 19 18 16 40 40 H 1.09004 * 109.46865 * 57.81903 * 26 24 15 41 41 H 1.09001 * 109.47192 * 177.81437 * 26 24 15 42 42 H 1.08997 * 109.47562 * 297.82006 * 26 24 15 43 43 H 1.08998 * 109.49091 * 292.70845 * 27 10 9 44 44 H 1.09004 * 109.48723 * 52.76066 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1884 1.2009 0.0000 4 6 3.5768 1.1949 -0.0005 5 6 4.2318 -0.0236 -0.0005 6 7 5.5858 -0.0753 -0.0016 7 8 6.2345 0.9471 0.1304 8 8 6.1543 -1.1443 -0.1344 9 6 3.4816 -1.1948 -0.0005 10 7 4.1268 -2.4261 -0.0010 11 6 3.7078 -3.2405 1.1475 12 6 4.5686 -4.5065 1.2130 13 1 4.1886 -5.1679 1.9916 14 6 6.0196 -4.1310 1.5206 15 7 4.4997 -5.1862 -0.0895 16 6 4.1891 -6.5174 -0.1722 17 1 3.6452 -6.8930 -1.0262 18 6 4.5684 -7.3829 0.8446 19 7 5.4233 -6.9851 1.7629 20 14 3.8657 -9.1125 0.9095 21 1 4.7408 -10.0316 0.1384 22 1 3.7947 -9.5653 2.3219 23 1 2.5029 -9.1155 0.3196 24 6 4.7792 -4.3997 -1.3005 25 1 5.8323 -4.1190 -1.3199 26 6 4.4414 -5.2288 -2.5412 27 6 3.9043 -3.1365 -1.2674 28 7 2.1582 -1.1475 -0.0055 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8899 0.5139 31 1 -0.3633 0.8900 0.5139 32 1 1.6469 2.1353 -0.0004 33 1 4.1329 2.1208 -0.0010 34 1 2.6600 -3.5186 1.0333 35 1 3.8338 -2.6671 2.0659 36 1 6.3948 -3.4643 0.7442 37 1 6.0677 -3.6276 2.4862 38 1 6.6299 -5.0336 1.5506 39 1 5.7442 -7.6112 2.4307 40 1 3.3951 -5.5320 -2.5017 41 1 4.6127 -4.6302 -3.4359 42 1 5.0756 -6.1148 -2.5699 43 1 2.8538 -3.4160 -1.3479 44 1 4.1729 -2.4872 -2.1007 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882518735.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:17 Heat of formation + Delta-G solvation = 96.980835 kcal Electronic energy + Delta-G solvation = -28945.782811 eV Core-core repulsion = 25096.790763 eV Total energy + Delta-G solvation = -3848.992048 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 1.79 seconds Orbital eigenvalues (eV) -42.74389 -40.65815 -38.47125 -36.19941 -35.11870 -33.93616 -32.55387 -32.09200 -30.70835 -29.54833 -27.75383 -26.19202 -25.67202 -24.68145 -23.70527 -22.41491 -21.85134 -20.74210 -19.28893 -18.75306 -18.43383 -17.53631 -17.11149 -16.35012 -15.83165 -15.30085 -15.05977 -14.77801 -14.28733 -14.04733 -13.89710 -13.66381 -13.32958 -13.02409 -12.81285 -12.68441 -12.63344 -11.87838 -11.56019 -11.33207 -11.13271 -11.00001 -10.91291 -10.84121 -10.67362 -10.62467 -10.56796 -10.48015 -10.39074 -10.21744 -10.02491 -9.88661 -9.59992 -9.37316 -9.17623 -8.46541 -8.19101 -6.50180 -5.72787 -3.19418 -0.39163 0.60628 1.64189 2.24736 3.12244 3.38529 3.41783 3.46808 3.47591 3.87617 4.11289 4.23146 4.50828 4.57435 4.75379 5.03637 5.12954 5.20263 5.26247 5.36620 5.44080 5.47882 5.71171 5.77903 5.85776 5.98773 6.06889 6.21269 6.28073 6.32142 6.42941 6.59775 6.83486 6.90120 7.00904 7.09458 7.20329 7.30913 7.34034 7.37374 7.40699 7.77536 7.87198 8.07002 8.13677 8.54241 9.28888 9.88429 10.49814 11.35202 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.017050 B = 0.004518 C = 0.004077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.851317 B = 6196.413572 C = 6866.073922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.198 3.802 3 C -0.198 4.198 4 C 0.006 3.994 5 C -0.119 4.119 6 N 0.071 4.929 7 O -0.241 6.241 8 O -0.096 6.096 9 C 0.401 3.599 10 N -0.469 5.469 11 C 0.048 3.952 12 C 0.206 3.794 13 H 0.094 0.906 14 C -0.142 4.142 15 N -0.582 5.582 16 C -0.251 4.251 17 H 0.067 0.933 18 C 0.009 3.991 19 N -0.898 5.898 20 Si 0.899 3.101 21 H -0.288 1.288 22 H -0.291 1.291 23 H -0.281 1.281 24 C 0.174 3.826 25 H 0.045 0.955 26 C -0.135 4.135 27 C 0.063 3.937 28 N -0.508 5.508 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.155 0.845 33 H 0.165 0.835 34 H 0.044 0.956 35 H 0.055 0.945 36 H 0.048 0.952 37 H 0.015 0.985 38 H 0.078 0.922 39 H 0.253 0.747 40 H 0.052 0.948 41 H 0.038 0.962 42 H 0.066 0.934 43 H 0.045 0.955 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.784 16.359 -3.887 18.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.059 3.941 3 C -0.219 4.219 4 C -0.020 4.020 5 C -0.215 4.215 6 N 0.581 4.419 7 O -0.430 6.430 8 O -0.321 6.321 9 C 0.170 3.830 10 N -0.193 5.193 11 C -0.079 4.079 12 C 0.099 3.901 13 H 0.112 0.888 14 C -0.201 4.201 15 N -0.305 5.305 16 C -0.381 4.381 17 H 0.085 0.915 18 C -0.190 4.190 19 N -0.542 5.542 20 Si 0.729 3.271 21 H -0.215 1.215 22 H -0.218 1.218 23 H -0.207 1.207 24 C 0.067 3.933 25 H 0.063 0.937 26 C -0.194 4.194 27 C -0.065 4.065 28 N -0.222 5.222 29 H 0.109 0.891 30 H 0.106 0.894 31 H 0.103 0.897 32 H 0.173 0.827 33 H 0.183 0.817 34 H 0.063 0.937 35 H 0.073 0.927 36 H 0.067 0.933 37 H 0.034 0.966 38 H 0.097 0.903 39 H 0.064 0.936 40 H 0.071 0.929 41 H 0.057 0.943 42 H 0.085 0.915 43 H 0.064 0.936 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.377 15.729 -3.648 18.672 hybrid contribution -0.367 -0.112 0.153 0.413 sum -9.744 15.617 -3.495 18.736 Atomic orbital electron populations 1.20927 0.87530 1.04550 1.04073 1.21804 0.97931 0.87991 0.86423 1.21994 0.93373 1.00214 1.06284 1.21649 0.95067 0.97195 0.88104 1.19577 0.85129 0.96728 1.20071 1.39189 1.01963 1.01278 0.99458 1.94515 1.66463 1.24523 1.57458 1.94744 1.72540 1.16052 1.48794 1.20375 0.86353 0.92666 0.83605 1.60600 1.51742 1.00749 1.06170 1.23026 0.99497 0.96103 0.89286 1.20342 0.93024 0.87608 0.89151 0.88833 1.22059 0.99054 1.01354 0.97635 1.44219 1.80682 1.06193 0.99437 1.19094 1.29359 0.83468 1.06139 0.91535 1.25170 0.97385 0.97437 0.99017 1.69915 1.32041 1.33809 1.18405 0.86360 0.78857 0.85114 0.76802 1.21463 1.21753 1.20674 1.20563 0.95846 0.88480 0.88399 0.93707 1.21775 1.01892 1.00154 0.95530 1.22841 1.00019 0.96350 0.87241 1.68329 1.08826 1.29558 1.15493 0.89139 0.89409 0.89750 0.82742 0.81725 0.93745 0.92678 0.93288 0.96567 0.90287 0.93629 0.92932 0.94319 0.91477 0.93643 0.92512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 37. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.78 10.17 36.01 0.37 -0.41 16 2 C 0.20 2.10 6.78 -82.61 -0.56 1.54 16 3 C -0.20 -1.73 9.73 -39.42 -0.38 -2.11 16 4 C 0.01 0.07 9.54 -39.32 -0.38 -0.31 16 5 C -0.12 -1.83 6.50 -85.89 -0.56 -2.39 16 6 N 0.07 1.25 4.06 31.54 0.13 1.38 16 7 O -0.24 -4.20 18.12 -29.46 -0.53 -4.73 16 8 O -0.10 -1.90 15.76 -29.46 -0.46 -2.37 16 9 C 0.40 6.62 5.25 -155.01 -0.81 5.81 16 10 N -0.47 -8.79 1.78 -172.62 -0.31 -9.10 16 11 C 0.05 0.97 4.74 -3.70 -0.02 0.96 16 12 C 0.21 4.81 2.33 -67.49 -0.16 4.65 16 13 H 0.09 2.46 6.39 -51.93 -0.33 2.13 16 14 C -0.14 -3.32 8.96 37.16 0.33 -2.99 16 15 N -0.58 -13.99 2.70 -156.74 -0.42 -14.42 16 16 C -0.25 -6.53 8.58 -15.06 -0.13 -6.66 16 17 H 0.07 1.71 6.32 -52.49 -0.33 1.37 16 18 C 0.01 0.23 5.01 -17.43 -0.09 0.15 16 19 N -0.90 -24.88 9.65 55.49 0.54 -24.35 16 20 Si 0.90 21.21 29.57 -169.99 -5.03 16.18 16 21 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 24 C 0.17 3.64 3.28 -67.25 -0.22 3.42 16 25 H 0.05 1.01 7.62 -51.93 -0.40 0.62 16 26 C -0.14 -2.53 7.98 37.15 0.30 -2.23 16 27 C 0.06 1.17 4.78 -3.46 -0.02 1.15 16 28 N -0.51 -7.48 9.70 -8.67 -0.08 -7.56 16 29 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.08 0.35 8.08 -51.93 -0.42 -0.07 16 32 H 0.15 0.73 8.06 -52.49 -0.42 0.30 16 33 H 0.17 1.47 7.52 -52.48 -0.39 1.07 16 34 H 0.04 0.92 8.00 -51.92 -0.42 0.51 16 35 H 0.05 1.08 8.09 -51.93 -0.42 0.66 16 36 H 0.05 1.13 6.12 -51.93 -0.32 0.82 16 37 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.08 2.07 6.63 -51.93 -0.34 1.73 16 39 H 0.25 6.90 8.32 -40.82 -0.34 6.57 16 40 H 0.05 0.99 7.43 -51.93 -0.39 0.60 16 41 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.07 1.33 7.71 -51.93 -0.40 0.93 16 43 H 0.05 0.88 8.13 -51.93 -0.42 0.45 16 44 H 0.06 0.98 8.09 -51.93 -0.42 0.56 16 LS Contribution 351.37 15.07 5.30 5.30 Total: -1.00 -30.11 351.37 -9.45 -39.56 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: -6.25 Total: -0.46 kcal Atomic # 6 Polarization: 2.90 SS G_CDS: -2.32 Total: 0.57 kcal Atomic # 7 Polarization: -53.90 SS G_CDS: -0.15 Total: -54.05 kcal Atomic # 8 Polarization: -6.10 SS G_CDS: -1.00 Total: -7.10 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.03 Total: 16.18 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.11 -9.45 -39.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882518735.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.544 kcal (2) G-P(sol) polarization free energy of solvation -30.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.563 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.79 seconds