Wall clock time and date at job start Tue Mar 31 2020 12:41:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38070 * 119.56883 * 2 1 4 4 C 1.38842 * 119.32074 * 180.02562 * 3 2 1 5 5 C 1.38339 * 118.50975 * 359.97438 * 4 3 2 6 6 N 1.35499 * 120.44882 * 179.97438 * 5 4 3 7 7 O 1.21796 * 120.00392 * 7.23714 * 6 5 4 8 8 O 1.21800 * 119.99676 * 187.23308 * 6 5 4 9 9 C 1.39089 * 119.09734 * 0.02562 * 5 4 3 10 10 N 1.39006 * 119.70446 * 179.97438 * 9 5 4 11 11 C 1.46897 * 111.00184 * 123.12204 * 10 9 5 12 12 C 1.53238 * 109.34546 * 187.25440 * 11 10 9 13 13 H 1.08996 * 109.63223 * 186.46416 * 12 11 10 14 14 C 1.52997 * 109.78925 * 65.97298 * 12 11 10 15 15 N 1.47083 * 108.51746 * 306.16973 * 12 11 10 16 16 C 1.36936 * 120.88360 * 231.18108 * 15 12 11 17 17 H 1.07994 * 120.00188 * 147.66803 * 16 15 12 18 18 C 1.38807 * 119.99700 * 327.94750 * 16 15 12 19 19 N 1.31618 * 120.00362 * 347.86241 * 18 16 15 20 20 Si 1.86803 * 120.00034 * 167.86901 * 18 16 15 21 21 H 1.48504 * 109.47234 * 89.99547 * 20 18 16 22 22 H 1.48494 * 109.47312 * 209.99847 * 20 18 16 23 23 H 1.48497 * 109.46913 * 329.99919 * 20 18 16 24 24 C 1.47080 * 118.23728 * 51.45853 * 15 12 11 25 25 H 1.09006 * 109.63206 * 68.24768 * 24 15 12 26 26 C 1.52995 * 109.63058 * 188.82802 * 24 15 12 27 27 C 1.46900 * 111.00153 * 247.42237 * 10 9 5 28 28 N 1.31935 * 119.57248 * 180.27552 * 2 1 3 29 29 H 1.09003 * 109.47060 * 89.99760 * 1 2 3 30 30 H 1.08998 * 109.47150 * 210.00248 * 1 2 3 31 31 H 1.09004 * 109.46730 * 330.00012 * 1 2 3 32 32 H 1.07995 * 120.33953 * 359.97438 * 3 2 1 33 33 H 1.08004 * 120.74068 * 179.97438 * 4 3 2 34 34 H 1.09008 * 109.49525 * 67.29396 * 11 10 9 35 35 H 1.09002 * 109.51945 * 307.23094 * 11 10 9 36 36 H 1.09005 * 109.46994 * 300.88028 * 14 12 11 37 37 H 1.09001 * 109.47126 * 60.87603 * 14 12 11 38 38 H 1.08995 * 109.47382 * 180.88139 * 14 12 11 39 39 H 0.97006 * 120.00581 * 185.01889 * 19 18 16 40 40 H 1.09004 * 109.46865 * 57.81903 * 26 24 15 41 41 H 1.09001 * 109.47192 * 177.81437 * 26 24 15 42 42 H 1.08997 * 109.47562 * 297.82006 * 26 24 15 43 43 H 1.08998 * 109.49091 * 292.70845 * 27 10 9 44 44 H 1.09004 * 109.48723 * 52.76066 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1884 1.2009 0.0000 4 6 3.5768 1.1949 -0.0005 5 6 4.2318 -0.0236 -0.0005 6 7 5.5858 -0.0753 -0.0016 7 8 6.2345 0.9471 0.1304 8 8 6.1543 -1.1443 -0.1344 9 6 3.4816 -1.1948 -0.0005 10 7 4.1268 -2.4261 -0.0010 11 6 3.7078 -3.2405 1.1475 12 6 4.5686 -4.5065 1.2130 13 1 4.1886 -5.1679 1.9916 14 6 6.0196 -4.1310 1.5206 15 7 4.4997 -5.1862 -0.0895 16 6 4.1891 -6.5174 -0.1722 17 1 3.6452 -6.8930 -1.0262 18 6 4.5684 -7.3829 0.8446 19 7 5.4233 -6.9851 1.7629 20 14 3.8657 -9.1125 0.9095 21 1 4.7408 -10.0316 0.1384 22 1 3.7947 -9.5653 2.3219 23 1 2.5029 -9.1155 0.3196 24 6 4.7792 -4.3997 -1.3005 25 1 5.8323 -4.1190 -1.3199 26 6 4.4414 -5.2288 -2.5412 27 6 3.9043 -3.1365 -1.2674 28 7 2.1582 -1.1475 -0.0055 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8899 0.5139 31 1 -0.3633 0.8900 0.5139 32 1 1.6469 2.1353 -0.0004 33 1 4.1329 2.1208 -0.0010 34 1 2.6600 -3.5186 1.0333 35 1 3.8338 -2.6671 2.0659 36 1 6.3948 -3.4643 0.7442 37 1 6.0677 -3.6276 2.4862 38 1 6.6299 -5.0336 1.5506 39 1 5.7442 -7.6112 2.4307 40 1 3.3951 -5.5320 -2.5017 41 1 4.6127 -4.6302 -3.4359 42 1 5.0756 -6.1148 -2.5699 43 1 2.8538 -3.4160 -1.3479 44 1 4.1729 -2.4872 -2.1007 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882518735.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:16 Heat of formation + Delta-G solvation = 80.758183 kcal Electronic energy + Delta-G solvation = -28946.486278 eV Core-core repulsion = 25096.790763 eV Total energy + Delta-G solvation = -3849.695515 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.96096 -41.79477 -39.96511 -37.55232 -36.59872 -34.96397 -34.30382 -33.60442 -32.20445 -30.43767 -29.61113 -27.76736 -27.12384 -25.94835 -25.29113 -23.70665 -23.03131 -22.43068 -20.50264 -20.37528 -19.77403 -18.79433 -18.53232 -17.63608 -17.34378 -16.91144 -16.37767 -15.84748 -15.72672 -15.36251 -15.33715 -15.21555 -14.85784 -14.35420 -13.91899 -13.65188 -13.50202 -13.35559 -13.19918 -12.97677 -12.78355 -12.74361 -12.46726 -12.42231 -12.36465 -12.21227 -12.11006 -11.98448 -11.94411 -11.71565 -11.53220 -11.41363 -11.21558 -10.98737 -10.49710 -10.34859 -9.66471 -8.46045 -7.76665 -5.24995 -1.52038 -0.31007 0.46412 1.06957 1.49339 1.51059 1.58876 2.15553 2.21015 2.55399 2.95324 3.21155 3.38621 3.40224 3.50906 3.54475 3.90921 4.12017 4.20732 4.30135 4.41337 4.44744 4.48599 4.51443 4.62759 4.68514 4.73019 4.75143 4.81142 4.90586 4.92537 5.07387 5.22750 5.25031 5.28819 5.42075 5.49813 5.61606 5.70683 5.76665 5.91379 5.97821 6.10118 6.38897 6.53017 6.74825 7.26481 7.92851 8.51147 9.29908 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.017050 B = 0.004518 C = 0.004077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.851317 B = 6196.413572 C = 6866.073922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.195 3.805 3 C -0.165 4.165 4 C 0.009 3.991 5 C -0.140 4.140 6 N 0.080 4.920 7 O -0.224 6.224 8 O -0.169 6.169 9 C 0.380 3.620 10 N -0.477 5.477 11 C 0.069 3.931 12 C 0.207 3.793 13 H 0.059 0.941 14 C -0.122 4.122 15 N -0.595 5.595 16 C -0.254 4.254 17 H 0.071 0.929 18 C -0.042 4.042 19 N -0.924 5.924 20 Si 0.959 3.041 21 H -0.287 1.287 22 H -0.298 1.298 23 H -0.273 1.273 24 C 0.169 3.831 25 H 0.023 0.977 26 C -0.125 4.125 27 C 0.079 3.921 28 N -0.534 5.534 29 H 0.107 0.893 30 H 0.073 0.927 31 H 0.122 0.878 32 H 0.211 0.789 33 H 0.192 0.808 34 H 0.035 0.965 35 H 0.057 0.943 36 H 0.046 0.954 37 H 0.022 0.978 38 H 0.046 0.954 39 H 0.247 0.753 40 H 0.050 0.950 41 H 0.071 0.929 42 H 0.049 0.951 43 H 0.039 0.961 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.648 19.642 -4.898 23.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.057 3.943 3 C -0.185 4.185 4 C -0.016 4.016 5 C -0.237 4.237 6 N 0.583 4.417 7 O -0.420 6.420 8 O -0.378 6.378 9 C 0.149 3.851 10 N -0.200 5.200 11 C -0.059 4.059 12 C 0.100 3.900 13 H 0.077 0.923 14 C -0.181 4.181 15 N -0.318 5.318 16 C -0.384 4.384 17 H 0.088 0.912 18 C -0.238 4.238 19 N -0.569 5.569 20 Si 0.789 3.211 21 H -0.214 1.214 22 H -0.225 1.225 23 H -0.198 1.198 24 C 0.063 3.937 25 H 0.041 0.959 26 C -0.183 4.183 27 C -0.049 4.049 28 N -0.249 5.249 29 H 0.126 0.874 30 H 0.092 0.908 31 H 0.141 0.859 32 H 0.228 0.772 33 H 0.209 0.791 34 H 0.053 0.947 35 H 0.075 0.925 36 H 0.065 0.935 37 H 0.041 0.959 38 H 0.065 0.935 39 H 0.056 0.944 40 H 0.069 0.931 41 H 0.090 0.910 42 H 0.068 0.932 43 H 0.058 0.942 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -12.225 18.922 -4.699 23.012 hybrid contribution 0.359 -0.848 0.447 1.024 sum -11.866 18.073 -4.252 22.035 Atomic orbital electron populations 1.21109 0.84529 1.05778 1.05402 1.22616 0.99779 0.87509 0.84404 1.22587 0.92235 1.01561 1.02094 1.22110 0.96284 0.96267 0.86973 1.19798 0.83638 0.98157 1.22143 1.39449 1.02992 1.00758 0.98463 1.94461 1.67293 1.24311 1.55972 1.94766 1.73524 1.16635 1.52916 1.20135 0.87338 0.91586 0.86064 1.60347 1.53038 1.01452 1.05205 1.22570 0.97843 0.94930 0.90523 1.20138 0.93063 0.88484 0.88268 0.92258 1.21820 0.98877 0.99572 0.97876 1.44403 1.80832 1.06067 1.00544 1.19379 1.28630 0.84454 1.05919 0.91168 1.25832 0.98060 1.00721 0.99163 1.70097 1.33424 1.34456 1.18969 0.85398 0.78400 0.81221 0.76125 1.21446 1.22468 1.19809 1.20683 0.95250 0.89620 0.88152 0.95926 1.21670 1.01224 0.99631 0.95800 1.22548 0.98745 0.95431 0.88148 1.68279 1.07864 1.32162 1.16557 0.87440 0.90773 0.85949 0.77218 0.79119 0.94679 0.92451 0.93469 0.95907 0.93489 0.94401 0.93064 0.90990 0.93177 0.94230 0.91070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.98 10.17 71.24 0.72 -0.25 16 2 C 0.20 3.31 6.78 42.50 0.29 3.60 16 3 C -0.17 -1.91 9.73 22.37 0.22 -1.70 16 4 C 0.01 0.17 9.54 22.44 0.21 0.38 16 5 C -0.14 -4.09 6.50 38.81 0.25 -3.83 16 6 N 0.08 2.80 4.06 -54.12 -0.22 2.58 16 7 O -0.22 -7.54 18.12 18.89 0.34 -7.19 16 8 O -0.17 -6.99 15.76 18.89 0.30 -6.69 16 9 C 0.38 12.26 5.25 133.04 0.70 12.96 16 10 N -0.48 -18.26 1.78 -700.05 -1.24 -19.51 16 11 C 0.07 2.90 4.74 86.38 0.41 3.31 16 12 C 0.21 10.23 2.33 44.96 0.10 10.33 16 13 H 0.06 3.32 6.39 -2.39 -0.02 3.30 16 14 C -0.12 -6.10 8.96 71.98 0.64 -5.45 16 15 N -0.59 -29.81 2.70 -649.81 -1.76 -31.57 16 16 C -0.25 -13.62 8.58 84.03 0.72 -12.90 16 17 H 0.07 3.66 6.32 -2.91 -0.02 3.64 16 18 C -0.04 -2.31 5.01 84.86 0.43 -1.88 16 19 N -0.92 -53.74 9.65 21.65 0.21 -53.53 16 20 Si 0.96 44.85 29.57 68.60 2.03 46.88 16 21 H -0.29 -13.33 7.11 99.48 0.71 -12.63 16 22 H -0.30 -14.14 7.11 99.48 0.71 -13.44 16 23 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 24 C 0.17 7.30 3.28 45.11 0.15 7.45 16 25 H 0.02 1.09 7.62 -2.38 -0.02 1.07 16 26 C -0.13 -4.69 7.98 71.98 0.57 -4.11 16 27 C 0.08 2.97 4.78 86.54 0.41 3.38 16 28 N -0.53 -14.71 9.70 -181.34 -1.76 -16.47 16 29 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.12 0.20 8.08 -2.39 -0.02 0.18 16 32 H 0.21 0.18 8.06 -2.91 -0.02 0.15 16 33 H 0.19 2.44 7.52 -2.91 -0.02 2.41 16 34 H 0.03 1.51 8.00 -2.38 -0.02 1.49 16 35 H 0.06 2.33 8.09 -2.39 -0.02 2.31 16 36 H 0.05 2.33 6.12 -2.38 -0.01 2.32 16 37 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.05 2.62 6.63 -2.39 -0.02 2.60 16 39 H 0.25 14.10 8.32 -92.70 -0.77 13.33 16 40 H 0.05 1.91 7.43 -2.38 -0.02 1.89 16 41 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 42 H 0.05 2.02 7.71 -2.39 -0.02 2.00 16 43 H 0.04 1.53 8.13 -2.39 -0.02 1.51 16 44 H 0.07 2.46 8.09 -2.38 -0.02 2.44 16 Total: -1.00 -71.20 351.37 4.75 -66.45 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: 1.01 Total: 7.76 kcal Atomic # 6 Polarization: 5.46 SS G_CDS: 5.84 Total: 11.30 kcal Atomic # 7 Polarization: -113.73 SS G_CDS: -4.77 Total: -118.50 kcal Atomic # 8 Polarization: -14.52 SS G_CDS: 0.64 Total: -13.88 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Total: -71.20 4.75 -66.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882518735.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.208 kcal (2) G-P(sol) polarization free energy of solvation -71.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.450 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds