Wall clock time and date at job start Tue Mar 31 2020 12:41:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38058 * 119.57374 * 2 1 4 4 C 1.38846 * 119.33013 * 180.02562 * 3 2 1 5 5 C 1.38342 * 118.50311 * 359.73297 * 4 3 2 6 6 N 1.47997 * 120.45113 * 180.28863 * 5 4 3 7 7 O 1.21800 * 119.99906 * 1.64757 * 6 5 4 8 8 O 1.21800 * 119.99927 * 181.65909 * 6 5 4 9 9 C 1.39103 * 119.09644 * 0.52546 * 5 4 3 10 10 N 1.39008 * 119.70100 * 179.73440 * 9 5 4 11 11 C 1.46895 * 110.99790 * 143.20228 * 10 9 5 12 12 C 1.53241 * 109.33981 * 187.25214 * 11 10 9 13 13 H 1.09000 * 109.62919 * 65.88244 * 12 11 10 14 14 C 1.53002 * 109.79000 * 186.36443 * 12 11 10 15 15 N 1.47076 * 108.52144 * 306.16783 * 12 11 10 16 16 C 1.36938 * 120.88158 * 231.16217 * 15 12 11 17 17 H 1.08003 * 119.99862 * 54.49282 * 16 15 12 18 18 C 1.38813 * 119.99808 * 234.48851 * 16 15 12 19 19 N 1.31614 * 120.00132 * 16.24634 * 18 16 15 20 20 Si 1.86804 * 119.99776 * 196.24290 * 18 16 15 21 21 H 1.48500 * 109.47147 * 90.00067 * 20 18 16 22 22 H 1.48497 * 109.46843 * 210.00278 * 20 18 16 23 23 H 1.48499 * 109.47127 * 330.00197 * 20 18 16 24 24 C 1.47081 * 118.23401 * 51.18519 * 15 12 11 25 25 H 1.08996 * 109.62766 * 68.53075 * 24 15 12 26 26 C 1.53003 * 109.62481 * 189.10396 * 24 15 12 27 27 C 1.46904 * 111.00160 * 267.50037 * 10 9 5 28 28 N 1.31945 * 119.57099 * 180.02562 * 2 1 3 29 29 H 1.09002 * 109.47146 * 269.97670 * 1 2 3 30 30 H 1.08991 * 109.47156 * 29.97746 * 1 2 3 31 31 H 1.08999 * 109.46920 * 149.98067 * 1 2 3 32 32 H 1.07999 * 120.33569 * 0.04510 * 3 2 1 33 33 H 1.07999 * 120.74881 * 179.97438 * 4 3 2 34 34 H 1.08999 * 109.49615 * 67.29033 * 11 10 9 35 35 H 1.09002 * 109.49414 * 307.20941 * 11 10 9 36 36 H 1.09001 * 109.47542 * 175.83401 * 14 12 11 37 37 H 1.09001 * 109.47383 * 295.83593 * 14 12 11 38 38 H 1.09000 * 109.47168 * 55.83154 * 14 12 11 39 39 H 0.96998 * 120.00222 * 184.93025 * 19 18 16 40 40 H 1.08995 * 109.47144 * 60.00192 * 26 24 15 41 41 H 1.09005 * 109.47087 * 179.97438 * 26 24 15 42 42 H 1.08998 * 109.47315 * 300.00146 * 26 24 15 43 43 H 1.09003 * 109.48802 * 52.78474 * 27 10 9 44 44 H 1.08995 * 109.48977 * 292.71360 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1884 1.2007 0.0000 4 6 3.5768 1.1948 -0.0005 5 6 4.2318 -0.0237 0.0046 6 7 5.7107 -0.0803 0.0107 7 8 6.3594 0.9501 0.0415 8 8 6.2791 -1.1572 -0.0154 9 6 3.4815 -1.1950 -0.0010 10 7 4.1268 -2.4263 -0.0016 11 6 3.3953 -3.4042 0.8148 12 6 4.2262 -4.6860 0.9369 13 1 5.1349 -4.4808 1.5029 14 6 3.4101 -5.7664 1.6494 15 7 4.5791 -5.1446 -0.4152 16 6 4.3436 -6.4367 -0.8030 17 1 3.3517 -6.8547 -0.7144 18 6 5.3796 -7.2090 -1.3100 19 7 6.6285 -6.8353 -1.1287 20 14 5.0012 -8.7786 -2.2494 21 1 4.8571 -8.4681 -3.6944 22 1 6.1096 -9.7485 -2.0595 23 1 3.7361 -9.3670 -1.7410 24 6 5.1922 -4.1788 -1.3396 25 1 6.1938 -3.9249 -0.9926 26 6 5.2685 -4.7866 -2.7417 27 6 4.3233 -2.9171 -1.3722 28 7 2.1582 -1.1476 -0.0005 29 1 -0.3633 -0.0004 1.0277 30 1 -0.3633 0.8901 -0.5134 31 1 -0.3633 -0.8898 -0.5141 32 1 1.6469 2.1352 0.0007 33 1 4.1329 2.1206 -0.0010 34 1 2.4411 -3.6331 0.3402 35 1 3.2182 -2.9897 1.8072 36 1 3.9771 -6.6972 1.6679 37 1 3.1998 -5.4487 2.6707 38 1 2.4718 -5.9232 1.1173 39 1 7.3493 -7.3350 -1.5431 40 1 4.2639 -5.0306 -3.0870 41 1 5.7228 -4.0687 -3.4247 42 1 5.8728 -5.6932 -2.7123 43 1 4.8192 -2.1491 -1.9658 44 1 3.3562 -3.1527 -1.8163 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882518736.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:21 Heat of formation + Delta-G solvation = 83.645502 kcal Electronic energy + Delta-G solvation = -28727.584250 eV Core-core repulsion = 24878.013938 eV Total energy + Delta-G solvation = -3849.570312 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.00205 -40.66338 -38.43200 -36.15599 -35.25400 -33.67853 -32.81435 -32.12621 -30.78652 -29.01997 -27.62183 -26.09646 -25.74031 -24.85265 -23.83922 -22.35631 -21.59038 -20.30399 -19.19186 -19.06339 -18.42296 -17.18818 -17.06346 -16.36836 -16.07567 -15.24419 -15.12177 -14.80138 -14.38995 -14.26468 -13.97298 -13.81581 -13.24584 -12.93488 -12.86045 -12.68388 -12.62972 -12.02477 -11.59467 -11.40243 -11.25940 -11.14860 -10.97493 -10.83691 -10.74995 -10.68181 -10.54472 -10.47286 -10.38614 -10.27770 -10.10883 -9.90494 -9.74294 -9.49928 -9.47309 -8.29495 -8.07393 -6.32495 -5.66984 -3.54843 -0.14521 0.65773 1.46989 1.64159 3.11980 3.34197 3.42823 3.43340 3.44026 3.91918 4.17733 4.32539 4.45206 4.61203 4.77800 5.07208 5.16250 5.22629 5.27977 5.31817 5.41154 5.50581 5.72758 5.77200 5.87525 5.93244 6.09179 6.17289 6.25781 6.41297 6.45068 6.59145 6.59696 6.69874 6.82581 6.94911 7.04794 7.15527 7.30683 7.36386 7.47890 7.63412 7.74199 7.91056 8.02937 8.65342 9.23684 9.75103 10.55540 11.21613 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.017141 B = 0.004448 C = 0.003966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.078388 B = 6293.811263 C = 7058.930605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.191 3.809 3 C -0.199 4.199 4 C 0.000 4.000 5 C -0.103 4.103 6 N 0.033 4.967 7 O -0.208 6.208 8 O -0.085 6.085 9 C 0.388 3.612 10 N -0.467 5.467 11 C 0.054 3.946 12 C 0.172 3.828 13 H 0.037 0.963 14 C -0.128 4.128 15 N -0.577 5.577 16 C -0.262 4.262 17 H 0.052 0.948 18 C 0.036 3.964 19 N -0.871 5.871 20 Si 0.882 3.118 21 H -0.283 1.283 22 H -0.290 1.290 23 H -0.275 1.275 24 C 0.202 3.798 25 H 0.051 0.949 26 C -0.144 4.144 27 C 0.062 3.938 28 N -0.505 5.505 29 H 0.089 0.911 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.154 0.846 33 H 0.162 0.838 34 H 0.052 0.948 35 H 0.058 0.942 36 H 0.070 0.930 37 H 0.034 0.966 38 H 0.047 0.953 39 H 0.255 0.745 40 H 0.040 0.960 41 H 0.023 0.977 42 H 0.098 0.902 43 H 0.057 0.943 44 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.955 15.412 1.884 19.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.051 3.949 3 C -0.220 4.220 4 C -0.027 4.027 5 C -0.192 4.192 6 N 0.553 4.447 7 O -0.408 6.408 8 O -0.317 6.317 9 C 0.156 3.844 10 N -0.187 5.187 11 C -0.074 4.074 12 C 0.066 3.934 13 H 0.055 0.945 14 C -0.186 4.186 15 N -0.302 5.302 16 C -0.392 4.392 17 H 0.069 0.931 18 C -0.166 4.166 19 N -0.510 5.510 20 Si 0.711 3.289 21 H -0.210 1.210 22 H -0.216 1.216 23 H -0.200 1.200 24 C 0.096 3.904 25 H 0.069 0.931 26 C -0.202 4.202 27 C -0.065 4.065 28 N -0.220 5.220 29 H 0.107 0.893 30 H 0.101 0.899 31 H 0.104 0.896 32 H 0.171 0.829 33 H 0.179 0.821 34 H 0.071 0.929 35 H 0.077 0.923 36 H 0.089 0.911 37 H 0.053 0.947 38 H 0.066 0.934 39 H 0.065 0.935 40 H 0.059 0.941 41 H 0.042 0.958 42 H 0.117 0.883 43 H 0.075 0.925 44 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -11.437 14.681 2.097 18.728 hybrid contribution 0.024 0.107 -0.816 0.823 sum -11.413 14.788 1.281 18.724 Atomic orbital electron populations 1.20881 0.87575 1.04399 1.03977 1.21694 0.97822 0.87917 0.87514 1.21903 0.92987 1.00143 1.07004 1.21435 0.94828 0.97013 0.89413 1.21916 0.81735 0.96091 1.19459 1.43190 1.02380 1.00758 0.98324 1.94483 1.65186 1.24625 1.56526 1.94722 1.71278 1.16469 1.49280 1.20157 0.86585 0.91975 0.85679 1.60041 1.43512 1.00236 1.14909 1.22798 0.96585 0.93050 0.94959 1.20568 0.94549 0.89589 0.88740 0.94543 1.21683 1.00001 0.99990 0.96950 1.44011 1.72524 1.07243 1.06379 1.18662 0.92136 0.87711 1.40679 0.93071 1.25580 0.95251 0.96365 0.99438 1.70144 0.97999 1.41034 1.41810 0.86646 0.77800 0.83955 0.80528 1.20971 1.21569 1.20039 1.20335 0.93964 0.85127 0.91005 0.93092 1.22022 1.01546 1.02378 0.94247 1.22974 1.00447 0.99477 0.83562 1.68270 1.07806 1.29457 1.16505 0.89255 0.89876 0.89569 0.82867 0.82059 0.92918 0.92346 0.91053 0.94667 0.93374 0.93478 0.94075 0.95799 0.88338 0.92499 0.94042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.76 10.17 36.01 0.37 -0.39 16 2 C 0.19 2.03 6.78 -82.61 -0.56 1.47 16 3 C -0.20 -1.77 9.73 -39.42 -0.38 -2.15 16 4 C 0.00 0.00 9.67 -39.32 -0.38 -0.38 16 5 C -0.10 -1.60 6.89 -79.60 -0.55 -2.15 16 6 N 0.03 0.59 4.45 34.13 0.15 0.74 16 7 O -0.21 -3.62 18.52 -29.46 -0.55 -4.16 16 8 O -0.09 -1.73 16.45 -29.46 -0.48 -2.22 16 9 C 0.39 6.45 5.55 -155.01 -0.86 5.59 16 10 N -0.47 -8.88 2.76 -172.91 -0.48 -9.36 16 11 C 0.05 1.03 4.35 -3.70 -0.02 1.01 16 12 C 0.17 3.72 3.65 -67.49 -0.25 3.47 16 13 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 14 C -0.13 -2.50 8.22 37.16 0.31 -2.20 16 15 N -0.58 -13.98 2.80 -157.01 -0.44 -14.42 16 16 C -0.26 -6.76 6.79 -15.06 -0.10 -6.87 16 17 H 0.05 1.35 7.32 -52.48 -0.38 0.96 16 18 C 0.04 0.95 3.35 -17.43 -0.06 0.89 16 19 N -0.87 -24.23 11.79 55.49 0.65 -23.58 16 20 Si 0.88 20.60 29.59 -169.99 -5.03 15.57 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 24 C 0.20 4.68 3.13 -67.49 -0.21 4.47 16 25 H 0.05 1.33 8.14 -51.93 -0.42 0.90 16 26 C -0.14 -3.27 8.12 37.16 0.30 -2.97 16 27 C 0.06 1.23 4.25 -3.70 -0.02 1.21 16 28 N -0.51 -7.43 9.20 -8.67 -0.08 -7.51 16 29 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.08 0.35 8.07 -51.93 -0.42 -0.07 16 31 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.15 0.75 8.06 -52.49 -0.42 0.33 16 33 H 0.16 1.44 7.69 -52.49 -0.40 1.03 16 34 H 0.05 1.03 7.85 -51.93 -0.41 0.62 16 35 H 0.06 1.04 8.09 -51.93 -0.42 0.62 16 36 H 0.07 1.53 7.50 -51.93 -0.39 1.14 16 37 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.05 0.92 7.81 -51.93 -0.41 0.52 16 39 H 0.26 6.88 8.32 -40.82 -0.34 6.54 16 40 H 0.04 0.91 8.00 -51.93 -0.42 0.50 16 41 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.10 2.50 4.49 -51.93 -0.23 2.26 16 43 H 0.06 1.10 7.89 -51.93 -0.41 0.69 16 44 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 355.60 15.07 5.36 5.36 Total: -1.00 -30.00 355.60 -9.71 -39.71 By element: Atomic # 1 Polarization: 5.26 SS G_CDS: -6.41 Total: -1.15 kcal Atomic # 6 Polarization: 3.42 SS G_CDS: -2.41 Total: 1.01 kcal Atomic # 7 Polarization: -53.93 SS G_CDS: -0.19 Total: -54.12 kcal Atomic # 8 Polarization: -5.35 SS G_CDS: -1.03 Total: -6.38 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.03 Total: 15.57 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -30.00 -9.71 -39.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882518736.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.353 kcal (2) G-P(sol) polarization free energy of solvation -30.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.707 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds