Wall clock time and date at job start Tue Mar 31 2020 12:41:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38058 * 119.57374 * 2 1 4 4 C 1.38846 * 119.33013 * 180.02562 * 3 2 1 5 5 C 1.38342 * 118.50311 * 359.73297 * 4 3 2 6 6 N 1.47997 * 120.45113 * 180.28863 * 5 4 3 7 7 O 1.21800 * 119.99906 * 1.64757 * 6 5 4 8 8 O 1.21800 * 119.99927 * 181.65909 * 6 5 4 9 9 C 1.39103 * 119.09644 * 0.52546 * 5 4 3 10 10 N 1.39008 * 119.70100 * 179.73440 * 9 5 4 11 11 C 1.46895 * 110.99790 * 143.20228 * 10 9 5 12 12 C 1.53241 * 109.33981 * 187.25214 * 11 10 9 13 13 H 1.09000 * 109.62919 * 65.88244 * 12 11 10 14 14 C 1.53002 * 109.79000 * 186.36443 * 12 11 10 15 15 N 1.47076 * 108.52144 * 306.16783 * 12 11 10 16 16 C 1.36938 * 120.88158 * 231.16217 * 15 12 11 17 17 H 1.08003 * 119.99862 * 54.49282 * 16 15 12 18 18 C 1.38813 * 119.99808 * 234.48851 * 16 15 12 19 19 N 1.31614 * 120.00132 * 16.24634 * 18 16 15 20 20 Si 1.86804 * 119.99776 * 196.24290 * 18 16 15 21 21 H 1.48500 * 109.47147 * 90.00067 * 20 18 16 22 22 H 1.48497 * 109.46843 * 210.00278 * 20 18 16 23 23 H 1.48499 * 109.47127 * 330.00197 * 20 18 16 24 24 C 1.47081 * 118.23401 * 51.18519 * 15 12 11 25 25 H 1.08996 * 109.62766 * 68.53075 * 24 15 12 26 26 C 1.53003 * 109.62481 * 189.10396 * 24 15 12 27 27 C 1.46904 * 111.00160 * 267.50037 * 10 9 5 28 28 N 1.31945 * 119.57099 * 180.02562 * 2 1 3 29 29 H 1.09002 * 109.47146 * 269.97670 * 1 2 3 30 30 H 1.08991 * 109.47156 * 29.97746 * 1 2 3 31 31 H 1.08999 * 109.46920 * 149.98067 * 1 2 3 32 32 H 1.07999 * 120.33569 * 0.04510 * 3 2 1 33 33 H 1.07999 * 120.74881 * 179.97438 * 4 3 2 34 34 H 1.08999 * 109.49615 * 67.29033 * 11 10 9 35 35 H 1.09002 * 109.49414 * 307.20941 * 11 10 9 36 36 H 1.09001 * 109.47542 * 175.83401 * 14 12 11 37 37 H 1.09001 * 109.47383 * 295.83593 * 14 12 11 38 38 H 1.09000 * 109.47168 * 55.83154 * 14 12 11 39 39 H 0.96998 * 120.00222 * 184.93025 * 19 18 16 40 40 H 1.08995 * 109.47144 * 60.00192 * 26 24 15 41 41 H 1.09005 * 109.47087 * 179.97438 * 26 24 15 42 42 H 1.08998 * 109.47315 * 300.00146 * 26 24 15 43 43 H 1.09003 * 109.48802 * 52.78474 * 27 10 9 44 44 H 1.08995 * 109.48977 * 292.71360 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1884 1.2007 0.0000 4 6 3.5768 1.1948 -0.0005 5 6 4.2318 -0.0237 0.0046 6 7 5.7107 -0.0803 0.0107 7 8 6.3594 0.9501 0.0415 8 8 6.2791 -1.1572 -0.0154 9 6 3.4815 -1.1950 -0.0010 10 7 4.1268 -2.4263 -0.0016 11 6 3.3953 -3.4042 0.8148 12 6 4.2262 -4.6860 0.9369 13 1 5.1349 -4.4808 1.5029 14 6 3.4101 -5.7664 1.6494 15 7 4.5791 -5.1446 -0.4152 16 6 4.3436 -6.4367 -0.8030 17 1 3.3517 -6.8547 -0.7144 18 6 5.3796 -7.2090 -1.3100 19 7 6.6285 -6.8353 -1.1287 20 14 5.0012 -8.7786 -2.2494 21 1 4.8571 -8.4681 -3.6944 22 1 6.1096 -9.7485 -2.0595 23 1 3.7361 -9.3670 -1.7410 24 6 5.1922 -4.1788 -1.3396 25 1 6.1938 -3.9249 -0.9926 26 6 5.2685 -4.7866 -2.7417 27 6 4.3233 -2.9171 -1.3722 28 7 2.1582 -1.1476 -0.0005 29 1 -0.3633 -0.0004 1.0277 30 1 -0.3633 0.8901 -0.5134 31 1 -0.3633 -0.8898 -0.5141 32 1 1.6469 2.1352 0.0007 33 1 4.1329 2.1206 -0.0010 34 1 2.4411 -3.6331 0.3402 35 1 3.2182 -2.9897 1.8072 36 1 3.9771 -6.6972 1.6679 37 1 3.1998 -5.4487 2.6707 38 1 2.4718 -5.9232 1.1173 39 1 7.3493 -7.3350 -1.5431 40 1 4.2639 -5.0306 -3.0870 41 1 5.7228 -4.0687 -3.4247 42 1 5.8728 -5.6932 -2.7123 43 1 4.8192 -2.1491 -1.9658 44 1 3.3562 -3.1527 -1.8163 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882518736.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:20 Heat of formation + Delta-G solvation = 66.718639 kcal Electronic energy + Delta-G solvation = -28728.318254 eV Core-core repulsion = 24878.013938 eV Total energy + Delta-G solvation = -3850.304316 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.24612 -41.82546 -39.93528 -37.53938 -36.78471 -34.76801 -34.44337 -33.68192 -32.24654 -29.95405 -29.42842 -27.67506 -27.35278 -26.17125 -25.24353 -23.56551 -22.83300 -22.05863 -20.95951 -20.29405 -19.68048 -18.49377 -18.45106 -17.87220 -17.39933 -16.88119 -16.54663 -16.16713 -15.84896 -15.50383 -15.40388 -14.95382 -14.79120 -14.55308 -13.85472 -13.78315 -13.48604 -13.34603 -13.26643 -13.16138 -12.86713 -12.72968 -12.60192 -12.52084 -12.31557 -12.22717 -12.15486 -12.10880 -12.06943 -11.68919 -11.65414 -11.45651 -11.37979 -11.05403 -10.54807 -10.10585 -9.63370 -8.34814 -7.66174 -5.61471 -1.29291 -0.27676 0.25106 0.45236 1.46647 1.49743 1.56769 2.11985 2.25704 2.50817 2.98836 3.26905 3.30114 3.44258 3.48860 3.57457 3.94508 4.12018 4.13994 4.24521 4.39844 4.45217 4.51264 4.53695 4.57028 4.71925 4.73211 4.76969 4.81137 4.87242 4.91719 4.93761 4.95642 5.17028 5.24329 5.34015 5.40526 5.47252 5.66660 5.70562 5.75657 5.89687 6.00158 6.45144 6.60467 6.62906 7.25316 7.79024 8.56928 9.18422 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.017141 B = 0.004448 C = 0.003966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.078388 B = 6293.811263 C = 7058.930605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.186 3.814 3 C -0.165 4.165 4 C 0.002 3.998 5 C -0.121 4.121 6 N 0.038 4.962 7 O -0.176 6.176 8 O -0.172 6.172 9 C 0.366 3.634 10 N -0.483 5.483 11 C 0.074 3.926 12 C 0.164 3.836 13 H 0.005 0.995 14 C -0.116 4.116 15 N -0.590 5.590 16 C -0.262 4.262 17 H 0.049 0.951 18 C -0.003 4.003 19 N -0.907 5.907 20 Si 0.940 3.060 21 H -0.279 1.279 22 H -0.296 1.296 23 H -0.267 1.267 24 C 0.204 3.796 25 H 0.009 0.991 26 C -0.136 4.136 27 C 0.085 3.915 28 N -0.527 5.527 29 H 0.106 0.894 30 H 0.120 0.880 31 H 0.073 0.927 32 H 0.210 0.790 33 H 0.190 0.810 34 H 0.049 0.951 35 H 0.071 0.929 36 H 0.045 0.955 37 H 0.067 0.933 38 H 0.051 0.949 39 H 0.251 0.749 40 H 0.042 0.958 41 H 0.043 0.957 42 H 0.073 0.927 43 H 0.058 0.942 44 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.518 18.618 1.903 23.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.047 3.953 3 C -0.185 4.185 4 C -0.024 4.024 5 C -0.211 4.211 6 N 0.552 4.448 7 O -0.389 6.389 8 O -0.384 6.384 9 C 0.134 3.866 10 N -0.203 5.203 11 C -0.054 4.054 12 C 0.058 3.942 13 H 0.022 0.978 14 C -0.174 4.174 15 N -0.315 5.315 16 C -0.392 4.392 17 H 0.067 0.933 18 C -0.202 4.202 19 N -0.548 5.548 20 Si 0.767 3.233 21 H -0.205 1.205 22 H -0.222 1.222 23 H -0.191 1.191 24 C 0.097 3.903 25 H 0.027 0.973 26 C -0.194 4.194 27 C -0.042 4.042 28 N -0.243 5.243 29 H 0.124 0.876 30 H 0.138 0.862 31 H 0.092 0.908 32 H 0.227 0.773 33 H 0.207 0.793 34 H 0.067 0.933 35 H 0.089 0.911 36 H 0.064 0.936 37 H 0.086 0.914 38 H 0.070 0.930 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.062 0.938 42 H 0.092 0.908 43 H 0.076 0.924 44 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -15.011 17.744 2.122 23.338 hybrid contribution 0.970 -0.562 -0.762 1.355 sum -14.041 17.182 1.360 22.231 Atomic orbital electron populations 1.21061 0.84468 1.05679 1.05332 1.22528 0.99725 0.87427 0.85591 1.22515 0.91801 1.01559 1.02643 1.21923 0.96014 0.96106 0.88364 1.22132 0.79559 0.97622 1.21758 1.43589 1.03741 1.00196 0.97275 1.94412 1.66320 1.24310 1.53881 1.94760 1.72569 1.17038 1.54024 1.19944 0.87632 0.90877 0.88160 1.59820 1.45133 1.01333 1.14061 1.22454 0.95368 0.91826 0.95714 1.20685 0.94180 0.91872 0.87428 0.97753 1.21548 0.99099 0.98054 0.98650 1.44234 1.72464 1.07203 1.07573 1.18806 0.91909 0.88352 1.40138 0.93332 1.26145 0.94905 0.98852 1.00304 1.70273 0.98858 1.42478 1.43167 0.85732 0.77495 0.80619 0.79435 1.20532 1.22211 1.19137 1.20144 0.92651 0.86618 0.90858 0.97341 1.21891 1.01160 1.01789 0.94596 1.22481 0.99076 0.97728 0.84912 1.68236 1.06671 1.31998 1.17408 0.87569 0.86159 0.90759 0.77334 0.79283 0.93258 0.91061 0.93604 0.91443 0.92976 0.93933 0.93872 0.93834 0.90842 0.92390 0.94467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.92 10.17 71.24 0.72 -0.20 16 2 C 0.19 3.14 6.78 42.50 0.29 3.43 16 3 C -0.17 -1.94 9.73 22.37 0.22 -1.72 16 4 C 0.00 0.03 9.67 22.44 0.22 0.25 16 5 C -0.12 -3.60 6.89 36.61 0.25 -3.35 16 6 N 0.04 1.38 4.45 -45.92 -0.20 1.17 16 7 O -0.18 -5.96 18.52 18.89 0.35 -5.61 16 8 O -0.17 -7.49 16.45 18.89 0.31 -7.18 16 9 C 0.37 11.94 5.55 133.05 0.74 12.68 16 10 N -0.48 -19.03 2.76 -700.96 -1.93 -20.97 16 11 C 0.07 2.89 4.35 86.39 0.38 3.26 16 12 C 0.16 7.45 3.65 44.96 0.16 7.62 16 13 H 0.00 0.24 8.14 -2.39 -0.02 0.22 16 14 C -0.12 -4.59 8.22 71.98 0.59 -3.99 16 15 N -0.59 -30.02 2.80 -650.65 -1.82 -31.84 16 16 C -0.26 -13.98 6.79 84.03 0.57 -13.41 16 17 H 0.05 2.61 7.32 -2.91 -0.02 2.59 16 18 C 0.00 -0.15 3.35 84.86 0.28 0.13 16 19 N -0.91 -53.08 11.79 21.65 0.26 -52.82 16 20 Si 0.94 43.39 29.59 68.60 2.03 45.42 16 21 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 22 H -0.30 -13.85 7.11 99.48 0.71 -13.15 16 23 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 24 C 0.20 10.03 3.13 44.96 0.14 10.17 16 25 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 26 C -0.14 -6.46 8.12 71.98 0.58 -5.87 16 27 C 0.08 3.54 4.25 86.38 0.37 3.91 16 28 N -0.53 -14.42 9.20 -181.33 -1.67 -16.09 16 29 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.12 0.19 8.07 -2.39 -0.02 0.17 16 31 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.21 0.22 8.06 -2.91 -0.02 0.19 16 33 H 0.19 2.37 7.69 -2.91 -0.02 2.35 16 34 H 0.05 1.93 7.85 -2.39 -0.02 1.91 16 35 H 0.07 2.53 8.09 -2.39 -0.02 2.52 16 36 H 0.04 2.02 7.50 -2.39 -0.02 2.01 16 37 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 38 H 0.05 2.00 7.81 -2.39 -0.02 1.98 16 39 H 0.25 14.27 8.32 -92.71 -0.77 13.50 16 40 H 0.04 1.97 8.00 -2.39 -0.02 1.95 16 41 H 0.04 1.82 8.14 -2.38 -0.02 1.80 16 42 H 0.07 3.90 4.49 -2.39 -0.01 3.89 16 43 H 0.06 2.36 7.89 -2.39 -0.02 2.34 16 44 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -71.95 355.60 3.84 -68.12 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: 1.00 Total: 6.89 kcal Atomic # 6 Polarization: 7.40 SS G_CDS: 5.52 Total: 12.92 kcal Atomic # 7 Polarization: -115.18 SS G_CDS: -5.37 Total: -120.55 kcal Atomic # 8 Polarization: -13.46 SS G_CDS: 0.66 Total: -12.80 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Total: -71.95 3.84 -68.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882518736.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.836 kcal (2) G-P(sol) polarization free energy of solvation -71.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds