Wall clock time and date at job start Tue Mar 31 2020 12:41:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38060 * 119.57756 * 2 1 4 4 C 1.38841 * 119.32700 * 179.71058 * 3 2 1 5 5 C 1.38337 * 118.50634 * 0.55192 * 4 3 2 6 6 N 1.48005 * 120.45102 * 179.71541 * 5 4 3 7 7 O 1.21795 * 119.99641 * 5.43337 * 6 5 4 8 8 O 1.21798 * 119.99689 * 185.44098 * 6 5 4 9 9 C 1.39097 * 119.09737 * 359.73039 * 5 4 3 10 10 N 1.39008 * 119.70125 * 180.02562 * 9 5 4 11 11 C 1.46906 * 110.99615 * 238.43073 * 10 9 5 12 12 C 1.53234 * 109.33891 * 172.74882 * 11 10 9 13 13 H 1.08999 * 109.63055 * 173.54165 * 12 11 10 14 14 C 1.52999 * 109.62882 * 294.12169 * 12 11 10 15 15 N 1.47080 * 108.52171 * 53.82940 * 12 11 10 16 16 C 1.36939 * 120.87948 * 128.79537 * 15 12 11 17 17 H 1.08001 * 119.99992 * 309.98895 * 16 15 12 18 18 C 1.38809 * 119.99854 * 129.99142 * 16 15 12 19 19 N 1.31617 * 119.99799 * 155.54798 * 18 16 15 20 20 Si 1.86794 * 120.00345 * 335.54205 * 18 16 15 21 21 H 1.48500 * 109.47419 * 93.73470 * 20 18 16 22 22 H 1.48502 * 109.47472 * 213.73981 * 20 18 16 23 23 H 1.48502 * 109.47014 * 333.73697 * 20 18 16 24 24 C 1.47076 * 118.23822 * 308.81439 * 15 12 11 25 25 H 1.08997 * 109.63111 * 291.47718 * 24 15 12 26 26 C 1.52997 * 109.62634 * 170.89341 * 24 15 12 27 27 C 1.46892 * 111.00197 * 114.13489 * 10 9 5 28 28 N 1.31941 * 119.56849 * 180.27070 * 2 1 3 29 29 H 1.09003 * 109.47125 * 269.73075 * 1 2 3 30 30 H 1.09000 * 109.47546 * 149.72457 * 1 2 3 31 31 H 1.09007 * 109.46832 * 29.72890 * 1 2 3 32 32 H 1.08004 * 120.33409 * 359.97438 * 3 2 1 33 33 H 1.08000 * 120.74719 * 180.30917 * 4 3 2 34 34 H 1.08996 * 109.49285 * 292.71254 * 11 10 9 35 35 H 1.08999 * 109.49240 * 52.78770 * 11 10 9 36 36 H 1.09003 * 109.47840 * 179.03150 * 14 12 11 37 37 H 1.09007 * 109.47058 * 299.02954 * 14 12 11 38 38 H 1.09000 * 109.47616 * 59.02893 * 14 12 11 39 39 H 0.97002 * 120.00429 * 180.02562 * 19 18 16 40 40 H 1.08995 * 109.47318 * 308.29471 * 26 24 15 41 41 H 1.09003 * 109.47472 * 68.30049 * 26 24 15 42 42 H 1.09010 * 109.47143 * 188.29705 * 26 24 15 43 43 H 1.09002 * 109.49112 * 307.21085 * 27 10 9 44 44 H 1.09005 * 109.49703 * 67.26019 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1885 1.2007 0.0000 4 6 3.5768 1.1946 0.0061 5 6 4.2318 -0.0239 0.0003 6 7 5.7107 -0.0805 0.0001 7 8 6.3594 0.9450 0.1050 8 8 6.2790 -1.1526 -0.1050 9 6 3.4814 -1.1951 -0.0057 10 7 4.1266 -2.4264 -0.0110 11 6 3.7357 -3.2204 -1.1835 12 6 4.5980 -4.4854 -1.2502 13 1 4.2371 -5.1328 -2.0493 14 6 6.0552 -4.1007 -1.5135 15 7 4.4975 -5.1877 0.0382 16 6 4.1847 -6.5199 0.0899 17 1 3.3307 -6.8956 -0.4541 18 6 4.9654 -7.3874 0.8414 19 7 4.4508 -8.5109 1.2945 20 14 6.7462 -6.9604 1.2098 21 1 6.8287 -6.2713 2.5226 22 1 7.5551 -8.2050 1.2523 23 1 7.2706 -6.0654 0.1471 24 6 4.7414 -4.4212 1.2695 25 1 5.7933 -4.1410 1.3241 26 6 4.3679 -5.2705 2.4860 27 6 3.8734 -3.1588 1.2369 28 7 2.1581 -1.1476 -0.0054 29 1 -0.3633 -0.0048 1.0277 30 1 -0.3634 -0.8875 -0.5181 31 1 -0.3633 0.8925 -0.5097 32 1 1.6470 2.1352 -0.0004 33 1 4.1330 2.1204 0.0113 34 1 2.6855 -3.5000 -1.0997 35 1 3.8844 -2.6307 -2.0881 36 1 6.6691 -5.0010 -1.5433 37 1 6.1267 -3.5804 -2.4687 38 1 6.4082 -3.4466 -0.7162 39 1 4.9962 -9.1171 1.8200 40 1 3.3588 -5.6627 2.3594 41 1 5.0704 -6.0986 2.5807 42 1 4.4083 -4.6553 3.3850 43 1 4.1220 -2.5244 2.0878 44 1 2.8212 -3.4389 1.2873 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882518737.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:24 Heat of formation + Delta-G solvation = 90.430738 kcal Electronic energy + Delta-G solvation = -29003.425130 eV Core-core repulsion = 25154.149048 eV Total energy + Delta-G solvation = -3849.276082 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.10354 -40.78778 -38.68769 -36.26509 -35.35031 -33.76383 -32.88100 -32.04136 -31.13038 -29.12113 -28.16452 -26.25095 -25.87198 -24.83392 -23.59106 -22.41497 -21.95148 -21.08684 -19.24154 -18.69265 -18.37127 -17.39249 -17.29447 -16.52562 -16.36305 -15.43581 -15.18363 -14.89411 -14.49546 -14.19330 -14.14369 -13.84953 -13.30835 -12.99907 -12.84723 -12.73465 -12.68710 -12.34849 -12.14145 -11.53978 -11.42281 -11.33717 -11.12544 -10.98732 -10.80759 -10.79790 -10.62148 -10.47658 -10.43445 -10.22083 -10.12105 -9.79896 -9.58255 -9.45400 -9.36930 -8.48716 -8.28782 -6.53060 -6.01769 -3.51948 -0.26100 0.52964 1.36526 1.52057 3.02725 3.32310 3.40467 3.54189 3.66443 3.82399 4.08617 4.21666 4.50769 4.56862 4.67258 4.90952 5.00490 5.11577 5.17681 5.23291 5.33840 5.43371 5.58168 5.65565 5.73465 5.81702 5.96914 6.01387 6.04991 6.24830 6.35990 6.45686 6.51156 6.56105 6.62647 6.73838 6.96722 7.03795 7.08819 7.24041 7.30062 7.38336 7.43726 7.94786 8.11016 8.51243 9.03946 9.71422 10.26785 11.11923 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.017228 B = 0.004942 C = 0.004312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.828688 B = 5664.713836 C = 6491.559327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.186 3.814 3 C -0.188 4.188 4 C -0.007 4.007 5 C -0.090 4.090 6 N 0.032 4.968 7 O -0.208 6.208 8 O -0.079 6.079 9 C 0.385 3.615 10 N -0.476 5.476 11 C 0.059 3.941 12 C 0.171 3.829 13 H 0.076 0.924 14 C -0.161 4.161 15 N -0.592 5.592 16 C -0.276 4.276 17 H 0.070 0.930 18 C 0.059 3.941 19 N -0.892 5.892 20 Si 0.862 3.138 21 H -0.280 1.280 22 H -0.303 1.303 23 H -0.257 1.257 24 C 0.174 3.826 25 H 0.040 0.960 26 C -0.146 4.146 27 C 0.059 3.941 28 N -0.499 5.499 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.155 0.845 33 H 0.163 0.837 34 H 0.051 0.949 35 H 0.061 0.939 36 H 0.050 0.950 37 H 0.034 0.966 38 H 0.071 0.929 39 H 0.263 0.737 40 H 0.070 0.930 41 H 0.072 0.928 42 H 0.032 0.968 43 H 0.057 0.943 44 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.636 20.153 -2.310 21.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.046 3.954 3 C -0.209 4.209 4 C -0.033 4.033 5 C -0.177 4.177 6 N 0.554 4.446 7 O -0.408 6.408 8 O -0.314 6.314 9 C 0.155 3.845 10 N -0.199 5.199 11 C -0.068 4.068 12 C 0.065 3.935 13 H 0.094 0.906 14 C -0.220 4.220 15 N -0.317 5.317 16 C -0.404 4.404 17 H 0.087 0.913 18 C -0.144 4.144 19 N -0.531 5.531 20 Si 0.690 3.310 21 H -0.207 1.207 22 H -0.231 1.231 23 H -0.181 1.181 24 C 0.068 3.932 25 H 0.058 0.942 26 C -0.203 4.203 27 C -0.068 4.068 28 N -0.213 5.213 29 H 0.108 0.892 30 H 0.105 0.895 31 H 0.102 0.898 32 H 0.173 0.827 33 H 0.180 0.820 34 H 0.069 0.931 35 H 0.079 0.921 36 H 0.069 0.931 37 H 0.053 0.947 38 H 0.090 0.910 39 H 0.073 0.927 40 H 0.089 0.911 41 H 0.091 0.909 42 H 0.051 0.949 43 H 0.076 0.924 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -7.303 19.419 -2.243 20.868 hybrid contribution 1.072 0.904 0.356 1.446 sum -6.231 20.323 -1.888 21.340 Atomic orbital electron populations 1.20899 0.87466 1.04468 1.04099 1.21728 0.97946 0.87879 0.87804 1.21980 0.93004 1.00265 1.05624 1.21472 0.94861 0.97114 0.89889 1.22016 0.81826 0.96081 1.17811 1.43188 1.02364 1.00725 0.98316 1.94496 1.65162 1.24949 1.56185 1.94676 1.71241 1.16828 1.48615 1.20127 0.86260 0.92230 0.85893 1.60510 1.52446 1.01038 1.05934 1.22689 0.99345 0.95342 0.89435 1.20757 0.92910 0.89802 0.90076 0.90601 1.22270 0.98296 1.01006 1.00446 1.44422 1.82255 1.06631 0.98347 1.18471 1.08803 0.81248 1.31877 0.91265 1.25779 0.97350 0.94440 0.96784 1.69925 1.36032 1.12493 1.34604 0.87393 0.87483 0.77118 0.78986 1.20702 1.23110 1.18096 1.20680 0.95647 0.88585 0.88318 0.94226 1.22092 1.04341 0.99547 0.94340 1.22791 1.00608 0.95824 0.87617 1.68317 1.08317 1.29610 1.15089 0.89200 0.89464 0.89823 0.82704 0.81963 0.93105 0.92085 0.93096 0.94670 0.91010 0.92704 0.91070 0.90920 0.94906 0.92444 0.92879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.72 10.17 36.01 0.37 -0.35 16 2 C 0.19 1.84 6.78 -82.61 -0.56 1.28 16 3 C -0.19 -1.50 9.73 -39.42 -0.38 -1.89 16 4 C -0.01 -0.07 9.67 -39.32 -0.38 -0.45 16 5 C -0.09 -1.27 6.88 -79.60 -0.55 -1.82 16 6 N 0.03 0.53 4.45 34.13 0.15 0.68 16 7 O -0.21 -3.36 18.53 -29.46 -0.55 -3.91 16 8 O -0.08 -1.46 15.74 -29.46 -0.46 -1.93 16 9 C 0.39 5.93 5.27 -155.01 -0.82 5.11 16 10 N -0.48 -8.33 2.00 -172.91 -0.35 -8.67 16 11 C 0.06 1.05 4.75 -3.70 -0.02 1.03 16 12 C 0.17 3.45 3.32 -67.49 -0.22 3.23 16 13 H 0.08 1.54 7.95 -51.93 -0.41 1.12 16 14 C -0.16 -3.16 9.19 37.16 0.34 -2.82 16 15 N -0.59 -13.69 2.02 -157.02 -0.32 -14.01 16 16 C -0.28 -7.39 8.77 -15.06 -0.13 -7.52 16 17 H 0.07 2.04 8.06 -52.49 -0.42 1.61 16 18 C 0.06 1.63 3.83 -17.43 -0.07 1.56 16 19 N -0.89 -26.09 13.97 55.49 0.78 -25.32 16 20 Si 0.86 21.81 24.66 -169.99 -4.19 17.62 16 21 H -0.28 -6.91 6.32 56.52 0.36 -6.55 16 22 H -0.30 -7.86 7.11 56.52 0.40 -7.46 16 23 H -0.26 -6.46 5.91 56.52 0.33 -6.12 16 24 C 0.17 3.76 2.06 -67.49 -0.14 3.62 16 25 H 0.04 0.91 6.91 -51.93 -0.36 0.55 16 26 C -0.15 -3.22 7.74 37.16 0.29 -2.93 16 27 C 0.06 1.10 4.74 -3.71 -0.02 1.08 16 28 N -0.50 -6.91 9.70 -8.67 -0.08 -6.99 16 29 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.08 0.31 8.07 -51.93 -0.42 -0.11 16 32 H 0.16 0.64 8.06 -52.48 -0.42 0.21 16 33 H 0.16 1.29 7.70 -52.49 -0.40 0.88 16 34 H 0.05 0.94 8.02 -51.93 -0.42 0.52 16 35 H 0.06 0.99 8.09 -51.93 -0.42 0.57 16 36 H 0.05 1.08 6.97 -51.93 -0.36 0.72 16 37 H 0.03 0.60 8.14 -51.92 -0.42 0.18 16 38 H 0.07 1.47 5.61 -51.93 -0.29 1.18 16 39 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 40 H 0.07 1.67 7.67 -51.93 -0.40 1.27 16 41 H 0.07 1.78 3.03 -51.93 -0.16 1.62 16 42 H 0.03 0.62 8.14 -51.92 -0.42 0.19 16 43 H 0.06 1.01 8.09 -51.93 -0.42 0.59 16 44 H 0.05 1.03 8.12 -51.93 -0.42 0.61 16 LS Contribution 346.52 15.07 5.22 5.22 Total: -1.00 -30.89 346.52 -8.35 -39.25 By element: Atomic # 1 Polarization: 5.20 SS G_CDS: -6.27 Total: -1.07 kcal Atomic # 6 Polarization: 1.42 SS G_CDS: -2.29 Total: -0.87 kcal Atomic # 7 Polarization: -54.49 SS G_CDS: 0.18 Total: -54.31 kcal Atomic # 8 Polarization: -4.83 SS G_CDS: -1.01 Total: -5.84 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.19 Total: 17.62 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.89 -8.35 -39.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882518737.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.680 kcal (2) G-P(sol) polarization free energy of solvation -30.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.249 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds