Wall clock time and date at job start Tue Mar 31 2020 12:41:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38060 * 119.57756 * 2 1 4 4 C 1.38841 * 119.32700 * 179.71058 * 3 2 1 5 5 C 1.38337 * 118.50634 * 0.55192 * 4 3 2 6 6 N 1.48005 * 120.45102 * 179.71541 * 5 4 3 7 7 O 1.21795 * 119.99641 * 5.43337 * 6 5 4 8 8 O 1.21798 * 119.99689 * 185.44098 * 6 5 4 9 9 C 1.39097 * 119.09737 * 359.73039 * 5 4 3 10 10 N 1.39008 * 119.70125 * 180.02562 * 9 5 4 11 11 C 1.46906 * 110.99615 * 238.43073 * 10 9 5 12 12 C 1.53234 * 109.33891 * 172.74882 * 11 10 9 13 13 H 1.08999 * 109.63055 * 173.54165 * 12 11 10 14 14 C 1.52999 * 109.62882 * 294.12169 * 12 11 10 15 15 N 1.47080 * 108.52171 * 53.82940 * 12 11 10 16 16 C 1.36939 * 120.87948 * 128.79537 * 15 12 11 17 17 H 1.08001 * 119.99992 * 309.98895 * 16 15 12 18 18 C 1.38809 * 119.99854 * 129.99142 * 16 15 12 19 19 N 1.31617 * 119.99799 * 155.54798 * 18 16 15 20 20 Si 1.86794 * 120.00345 * 335.54205 * 18 16 15 21 21 H 1.48500 * 109.47419 * 93.73470 * 20 18 16 22 22 H 1.48502 * 109.47472 * 213.73981 * 20 18 16 23 23 H 1.48502 * 109.47014 * 333.73697 * 20 18 16 24 24 C 1.47076 * 118.23822 * 308.81439 * 15 12 11 25 25 H 1.08997 * 109.63111 * 291.47718 * 24 15 12 26 26 C 1.52997 * 109.62634 * 170.89341 * 24 15 12 27 27 C 1.46892 * 111.00197 * 114.13489 * 10 9 5 28 28 N 1.31941 * 119.56849 * 180.27070 * 2 1 3 29 29 H 1.09003 * 109.47125 * 269.73075 * 1 2 3 30 30 H 1.09000 * 109.47546 * 149.72457 * 1 2 3 31 31 H 1.09007 * 109.46832 * 29.72890 * 1 2 3 32 32 H 1.08004 * 120.33409 * 359.97438 * 3 2 1 33 33 H 1.08000 * 120.74719 * 180.30917 * 4 3 2 34 34 H 1.08996 * 109.49285 * 292.71254 * 11 10 9 35 35 H 1.08999 * 109.49240 * 52.78770 * 11 10 9 36 36 H 1.09003 * 109.47840 * 179.03150 * 14 12 11 37 37 H 1.09007 * 109.47058 * 299.02954 * 14 12 11 38 38 H 1.09000 * 109.47616 * 59.02893 * 14 12 11 39 39 H 0.97002 * 120.00429 * 180.02562 * 19 18 16 40 40 H 1.08995 * 109.47318 * 308.29471 * 26 24 15 41 41 H 1.09003 * 109.47472 * 68.30049 * 26 24 15 42 42 H 1.09010 * 109.47143 * 188.29705 * 26 24 15 43 43 H 1.09002 * 109.49112 * 307.21085 * 27 10 9 44 44 H 1.09005 * 109.49703 * 67.26019 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1885 1.2007 0.0000 4 6 3.5768 1.1946 0.0061 5 6 4.2318 -0.0239 0.0003 6 7 5.7107 -0.0805 0.0001 7 8 6.3594 0.9450 0.1050 8 8 6.2790 -1.1526 -0.1050 9 6 3.4814 -1.1951 -0.0057 10 7 4.1266 -2.4264 -0.0110 11 6 3.7357 -3.2204 -1.1835 12 6 4.5980 -4.4854 -1.2502 13 1 4.2371 -5.1328 -2.0493 14 6 6.0552 -4.1007 -1.5135 15 7 4.4975 -5.1877 0.0382 16 6 4.1847 -6.5199 0.0899 17 1 3.3307 -6.8956 -0.4541 18 6 4.9654 -7.3874 0.8414 19 7 4.4508 -8.5109 1.2945 20 14 6.7462 -6.9604 1.2098 21 1 6.8287 -6.2713 2.5226 22 1 7.5551 -8.2050 1.2523 23 1 7.2706 -6.0654 0.1471 24 6 4.7414 -4.4212 1.2695 25 1 5.7933 -4.1410 1.3241 26 6 4.3679 -5.2705 2.4860 27 6 3.8734 -3.1588 1.2369 28 7 2.1581 -1.1476 -0.0054 29 1 -0.3633 -0.0048 1.0277 30 1 -0.3634 -0.8875 -0.5181 31 1 -0.3633 0.8925 -0.5097 32 1 1.6470 2.1352 -0.0004 33 1 4.1330 2.1204 0.0113 34 1 2.6855 -3.5000 -1.0997 35 1 3.8844 -2.6307 -2.0881 36 1 6.6691 -5.0010 -1.5433 37 1 6.1267 -3.5804 -2.4687 38 1 6.4082 -3.4466 -0.7162 39 1 4.9962 -9.1171 1.8200 40 1 3.3588 -5.6627 2.3594 41 1 5.0704 -6.0986 2.5807 42 1 4.4083 -4.6553 3.3850 43 1 4.1220 -2.5244 2.0878 44 1 2.8212 -3.4389 1.2873 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882518737.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:23 Heat of formation + Delta-G solvation = 72.265332 kcal Electronic energy + Delta-G solvation = -29004.212841 eV Core-core repulsion = 25154.149048 eV Total energy + Delta-G solvation = -3850.063793 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.21851 -41.85081 -40.12302 -37.50903 -36.80666 -34.71416 -34.47578 -33.76784 -32.47386 -30.10665 -29.79233 -27.86113 -27.24702 -25.98561 -25.10498 -23.60993 -23.17289 -22.66116 -20.39414 -20.21972 -19.68251 -18.88422 -18.46501 -18.01854 -17.48426 -17.01207 -16.59987 -16.03057 -15.83008 -15.52211 -15.39096 -15.06233 -14.75033 -14.65334 -14.31078 -14.00048 -13.73132 -13.56623 -13.22413 -13.18939 -13.12654 -12.78141 -12.59009 -12.49302 -12.33759 -12.24603 -12.15061 -12.05293 -11.88859 -11.70065 -11.52981 -11.39194 -11.30864 -11.09128 -10.47065 -10.35032 -9.76904 -8.47214 -8.19868 -5.67004 -1.28747 -0.30561 0.27224 0.45267 1.34794 1.44434 1.59562 2.15202 2.20169 2.45424 2.96218 3.03483 3.28830 3.31287 3.42450 3.55024 3.89751 4.05753 4.08183 4.20140 4.36232 4.41816 4.43584 4.47640 4.50442 4.62893 4.69195 4.70424 4.73200 4.77066 4.85035 4.91216 4.96470 5.10563 5.22200 5.26999 5.32287 5.33843 5.49175 5.65505 5.78636 5.93530 6.02920 6.30984 6.42732 6.69020 7.07316 7.62390 8.21829 8.97826 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.017228 B = 0.004942 C = 0.004312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.828688 B = 5664.713836 C = 6491.559327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.180 3.820 3 C -0.156 4.156 4 C -0.003 4.003 5 C -0.104 4.104 6 N 0.036 4.964 7 O -0.190 6.190 8 O -0.142 6.142 9 C 0.362 3.638 10 N -0.481 5.481 11 C 0.076 3.924 12 C 0.165 3.835 13 H 0.069 0.931 14 C -0.148 4.148 15 N -0.601 5.601 16 C -0.263 4.263 17 H 0.034 0.966 18 C 0.026 3.974 19 N -0.932 5.932 20 Si 0.910 3.090 21 H -0.269 1.269 22 H -0.310 1.310 23 H -0.256 1.256 24 C 0.173 3.827 25 H 0.030 0.970 26 C -0.139 4.139 27 C 0.076 3.924 28 N -0.526 5.526 29 H 0.102 0.898 30 H 0.072 0.928 31 H 0.121 0.879 32 H 0.209 0.791 33 H 0.190 0.810 34 H 0.038 0.962 35 H 0.078 0.922 36 H 0.029 0.971 37 H 0.060 0.940 38 H 0.063 0.937 39 H 0.263 0.737 40 H 0.049 0.951 41 H 0.048 0.952 42 H 0.064 0.936 43 H 0.069 0.931 44 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.817 24.766 -2.373 26.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.041 3.959 3 C -0.175 4.175 4 C -0.029 4.029 5 C -0.192 4.192 6 N 0.552 4.448 7 O -0.398 6.398 8 O -0.362 6.362 9 C 0.131 3.869 10 N -0.204 5.204 11 C -0.052 4.052 12 C 0.059 3.941 13 H 0.087 0.913 14 C -0.207 4.207 15 N -0.326 5.326 16 C -0.393 4.393 17 H 0.051 0.949 18 C -0.174 4.174 19 N -0.574 5.574 20 Si 0.738 3.262 21 H -0.196 1.196 22 H -0.238 1.238 23 H -0.181 1.181 24 C 0.067 3.933 25 H 0.048 0.952 26 C -0.197 4.197 27 C -0.052 4.052 28 N -0.240 5.240 29 H 0.120 0.880 30 H 0.091 0.909 31 H 0.139 0.861 32 H 0.226 0.774 33 H 0.207 0.793 34 H 0.057 0.943 35 H 0.096 0.904 36 H 0.048 0.952 37 H 0.079 0.921 38 H 0.082 0.918 39 H 0.072 0.928 40 H 0.068 0.932 41 H 0.067 0.933 42 H 0.083 0.917 43 H 0.087 0.913 44 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -8.466 23.968 -2.327 25.525 hybrid contribution 1.209 -0.273 0.345 1.287 sum -7.257 23.695 -1.983 24.860 Atomic orbital electron populations 1.21055 0.84857 1.05653 1.05131 1.22457 0.99598 0.87515 0.86305 1.22544 0.91983 1.01473 1.01536 1.21933 0.95891 0.96376 0.88744 1.22165 0.79937 0.97333 1.19799 1.43521 1.03515 1.00264 0.97460 1.94447 1.66119 1.24729 1.54524 1.94690 1.72322 1.17264 1.51946 1.19895 0.87115 0.91219 0.88642 1.60303 1.53605 1.01708 1.04780 1.22388 0.97697 0.94399 0.90704 1.20858 0.94016 0.90750 0.88438 0.91326 1.22109 0.97074 0.99966 1.01556 1.44484 1.82361 1.05660 1.00122 1.18260 1.07329 0.83044 1.30628 0.94869 1.26124 0.99793 0.94318 0.97119 1.70008 1.37104 1.13849 1.36403 0.86610 0.83824 0.76474 0.79284 1.19575 1.23841 1.18052 1.20654 0.95687 0.89667 0.87298 0.95206 1.21991 1.02157 0.99343 0.96215 1.22420 0.98832 0.94734 0.89200 1.68259 1.07557 1.32106 1.16117 0.87976 0.90878 0.86098 0.77446 0.79274 0.94342 0.90410 0.95170 0.92112 0.91765 0.92751 0.93210 0.93292 0.91715 0.91256 0.94095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.93 10.17 71.24 0.72 -0.20 16 2 C 0.18 2.82 6.78 42.50 0.29 3.10 16 3 C -0.16 -1.56 9.73 22.37 0.22 -1.35 16 4 C 0.00 -0.05 9.67 22.44 0.22 0.16 16 5 C -0.10 -2.70 6.88 36.61 0.25 -2.45 16 6 N 0.04 1.13 4.45 -45.92 -0.20 0.93 16 7 O -0.19 -5.74 18.53 18.89 0.35 -5.39 16 8 O -0.14 -5.24 15.74 18.89 0.30 -4.94 16 9 C 0.36 10.58 5.27 133.05 0.70 11.28 16 10 N -0.48 -16.70 2.00 -700.96 -1.41 -18.10 16 11 C 0.08 2.69 4.75 86.38 0.41 3.10 16 12 C 0.17 6.81 3.32 44.96 0.15 6.96 16 13 H 0.07 2.88 7.95 -2.39 -0.02 2.86 16 14 C -0.15 -5.85 9.19 71.98 0.66 -5.19 16 15 N -0.60 -28.67 2.02 -650.68 -1.31 -29.98 16 16 C -0.26 -14.74 8.77 84.03 0.74 -14.01 16 17 H 0.03 2.09 8.06 -2.91 -0.02 2.07 16 18 C 0.03 1.47 3.83 84.86 0.33 1.80 16 19 N -0.93 -56.68 13.97 21.65 0.30 -56.38 16 20 Si 0.91 46.37 24.66 68.60 1.69 48.06 16 21 H -0.27 -13.15 6.32 99.48 0.63 -12.52 16 22 H -0.31 -16.04 7.11 99.48 0.71 -15.33 16 23 H -0.26 -12.92 5.91 99.48 0.59 -12.34 16 24 C 0.17 7.57 2.06 44.96 0.09 7.67 16 25 H 0.03 1.39 6.91 -2.39 -0.02 1.38 16 26 C -0.14 -6.26 7.74 71.98 0.56 -5.70 16 27 C 0.08 2.84 4.74 86.38 0.41 3.25 16 28 N -0.53 -13.46 9.70 -181.34 -1.76 -15.22 16 29 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.12 0.15 8.07 -2.38 -0.02 0.13 16 32 H 0.21 -0.04 8.06 -2.91 -0.02 -0.07 16 33 H 0.19 1.94 7.70 -2.91 -0.02 1.92 16 34 H 0.04 1.44 8.02 -2.39 -0.02 1.42 16 35 H 0.08 2.48 8.09 -2.39 -0.02 2.46 16 36 H 0.03 1.28 6.97 -2.39 -0.02 1.26 16 37 H 0.06 2.05 8.14 -2.38 -0.02 2.03 16 38 H 0.06 2.66 5.61 -2.39 -0.01 2.65 16 39 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 40 H 0.05 2.40 7.67 -2.39 -0.02 2.39 16 41 H 0.05 2.42 3.03 -2.39 -0.01 2.42 16 42 H 0.06 2.42 8.14 -2.38 -0.02 2.40 16 43 H 0.07 2.40 8.09 -2.39 -0.02 2.39 16 44 H 0.04 1.61 8.12 -2.38 -0.02 1.59 16 Total: -1.00 -71.98 346.52 4.52 -67.46 By element: Atomic # 1 Polarization: 4.33 SS G_CDS: 0.82 Total: 5.15 kcal Atomic # 6 Polarization: 2.68 SS G_CDS: 5.74 Total: 8.42 kcal Atomic # 7 Polarization: -114.38 SS G_CDS: -4.38 Total: -118.76 kcal Atomic # 8 Polarization: -10.98 SS G_CDS: 0.65 Total: -10.33 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 1.69 Total: 48.06 kcal Total: -71.98 4.52 -67.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882518737.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.729 kcal (2) G-P(sol) polarization free energy of solvation -71.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds