Wall clock time and date at job start Tue Mar 31 2020 12:33:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 120.00354 * 2 1 4 4 H 1.48496 * 109.47252 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46652 * 299.99908 * 3 2 1 6 6 H 1.48497 * 109.46826 * 59.99616 * 3 2 1 7 7 C 1.37880 * 119.99896 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00022 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99815 * 359.97438 * 7 2 1 10 10 N 1.46495 * 109.47227 * 179.97438 * 9 7 2 11 11 C 1.34970 * 125.97408 * 124.99947 * 10 9 7 12 12 C 1.35250 * 107.85895 * 180.02562 * 11 10 9 13 13 C 1.40402 * 107.86724 * 0.02562 * 12 11 10 14 14 N 1.40188 * 125.97319 * 179.97438 * 13 12 11 15 15 C 1.34771 * 120.00003 * 0.02562 * 14 13 12 16 16 O 1.21592 * 120.00119 * 0.02562 * 15 14 13 17 17 N 1.34781 * 120.00240 * 179.97438 * 15 14 13 18 18 C 1.47214 * 126.70268 * 179.97438 * 17 15 14 19 19 C 1.53778 * 106.37914 * 148.74451 * 18 17 15 20 20 H 1.08995 * 112.38518 * 256.84984 * 19 18 17 21 21 C 1.54320 * 109.06894 * 132.42630 * 19 18 17 22 22 H 1.09005 * 110.53505 * 103.41677 * 21 19 18 23 23 O 1.42904 * 110.53075 * 340.64454 * 21 19 18 24 24 C 1.55053 * 103.94001 * 222.03098 * 21 19 18 25 25 C 1.55059 * 102.10768 * 40.05773 * 24 21 19 26 26 C 1.54321 * 103.93695 * 319.94161 * 25 24 21 27 27 H 1.09005 * 111.69310 * 262.79703 * 26 25 24 28 28 C 1.47215 * 126.69779 * 0.02941 * 17 15 14 29 29 N 1.31214 * 108.05305 * 0.26311 * 13 12 11 30 30 H 0.97001 * 119.99395 * 0.02562 * 1 2 3 31 31 H 1.09007 * 109.46880 * 60.00352 * 9 7 2 32 32 H 1.08996 * 109.47651 * 300.00238 * 9 7 2 33 33 H 1.07998 * 126.07285 * 0.02562 * 11 10 9 34 34 H 1.07991 * 126.06345 * 180.02562 * 12 11 10 35 35 H 0.97006 * 120.00334 * 180.02562 * 14 13 12 36 36 H 1.09002 * 110.07388 * 29.51387 * 18 17 15 37 37 H 1.09001 * 110.07242 * 267.96571 * 18 17 15 38 38 H 0.96702 * 113.99902 * 179.97438 * 23 21 19 39 39 H 1.08996 * 110.90434 * 281.85830 * 24 21 19 40 40 H 1.08999 * 110.93295 * 158.26960 * 24 21 19 41 41 H 1.08996 * 110.53351 * 201.32661 * 25 24 21 42 42 H 1.08994 * 110.65663 * 78.61010 * 25 24 21 43 43 H 1.09002 * 110.07240 * 92.03073 * 28 17 15 44 44 H 1.08999 * 110.07570 * 330.48209 * 28 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0017 10 7 2.2029 -3.6127 0.0015 11 6 2.2425 -4.6220 0.8966 12 6 3.2612 -5.4423 0.5521 13 6 3.8691 -4.9144 -0.5982 14 7 4.9654 -5.4649 -1.2766 15 6 5.5302 -6.6047 -0.8314 16 8 5.0885 -7.1559 0.1584 17 7 6.5839 -7.1344 -1.4839 18 6 7.3104 -8.3647 -1.1295 19 6 7.8137 -8.9674 -2.4517 20 1 7.2138 -9.8180 -2.7750 21 6 9.3024 -9.3442 -2.2997 22 1 9.4132 -10.4211 -2.1724 23 8 9.8864 -8.6451 -1.1986 24 6 9.9420 -8.8859 -3.6358 25 6 9.2237 -7.5361 -3.8941 26 6 7.7631 -7.8063 -3.4756 27 1 7.1368 -8.0507 -4.3336 28 6 7.2338 -6.5948 -2.6897 29 7 3.2356 -3.8123 -0.9236 30 1 -0.4849 0.8401 -0.0004 31 1 0.6240 -2.5574 -0.8881 32 1 0.6246 -2.5563 0.8919 33 1 1.5787 -4.7517 1.7386 34 1 3.5549 -6.3433 1.0698 35 1 5.3176 -5.0255 -2.0665 36 1 6.6400 -9.0645 -0.6305 37 1 8.1542 -8.1274 -0.4815 38 1 10.8219 -8.8452 -1.0573 39 1 9.7297 -9.5981 -4.4331 40 1 11.0162 -8.7395 -3.5233 41 1 9.2762 -7.2711 -4.9500 42 1 9.6573 -6.7464 -3.2807 43 1 8.0595 -5.9410 -2.4088 44 1 6.5093 -6.0461 -3.2914 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000887795673.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:33:17 Heat of formation + Delta-G solvation = 15.814920 kcal Electronic energy + Delta-G solvation = -26588.381785 eV Core-core repulsion = 22735.870118 eV Total energy + Delta-G solvation = -3852.511667 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.00703 -40.32230 -38.98632 -36.45657 -34.65144 -34.27941 -33.27571 -31.08853 -30.29829 -29.40686 -29.17196 -26.61449 -25.82951 -24.20709 -22.81994 -21.48727 -21.10954 -20.20428 -19.59567 -19.14808 -18.10148 -17.46121 -16.61476 -16.50638 -16.38833 -16.11566 -15.32565 -15.16645 -14.70418 -14.20912 -14.16139 -13.82575 -13.73169 -13.37740 -13.08840 -12.74770 -12.65707 -12.56628 -12.26548 -12.13733 -11.75827 -11.65710 -11.34592 -11.16690 -11.06663 -11.01064 -10.93538 -10.84283 -10.35911 -10.31723 -10.22648 -9.98577 -9.59608 -9.42824 -8.73516 -8.60012 -8.02883 -7.33961 -6.21006 -4.25627 2.39095 2.73062 3.17842 3.24549 3.31882 3.38655 3.52352 3.65102 3.83936 3.89947 4.11827 4.26244 4.36996 4.38509 4.68710 4.78190 4.78829 4.92577 5.06005 5.06895 5.14117 5.21867 5.35124 5.37519 5.48469 5.55938 5.61374 5.66246 5.76916 5.88271 5.89903 6.05541 6.09896 6.39114 6.60859 6.76957 6.89561 7.07085 7.18600 7.26052 7.56926 7.74019 7.87173 8.02619 8.12577 8.67705 8.72697 8.85751 9.39816 10.87706 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.023079 B = 0.002426 C = 0.002286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.945338 B =11538.807792 C =12245.538328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.061 3.939 3 Si 0.907 3.093 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.526 4.526 8 H 0.069 0.931 9 C 0.258 3.742 10 N -0.321 5.321 11 C 0.051 3.949 12 C -0.286 4.286 13 C 0.277 3.723 14 N -0.642 5.642 15 C 0.734 3.266 16 O -0.566 6.566 17 N -0.633 5.633 18 C 0.130 3.870 19 C -0.098 4.098 20 H 0.097 0.903 21 C 0.104 3.896 22 H 0.064 0.936 23 O -0.553 6.553 24 C -0.155 4.155 25 C -0.114 4.114 26 C -0.100 4.100 27 H 0.091 0.909 28 C 0.105 3.895 29 N -0.308 5.308 30 H 0.266 0.734 31 H 0.044 0.956 32 H 0.057 0.943 33 H 0.167 0.833 34 H 0.160 0.840 35 H 0.405 0.595 36 H 0.076 0.924 37 H 0.096 0.904 38 H 0.376 0.624 39 H 0.077 0.923 40 H 0.072 0.928 41 H 0.068 0.932 42 H 0.076 0.924 43 H 0.073 0.927 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.020 -19.918 -7.899 29.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.142 4.142 3 Si 0.735 3.265 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.564 4.564 8 H 0.087 0.913 9 C 0.141 3.859 10 N -0.103 5.103 11 C -0.099 4.099 12 C -0.317 4.317 13 C 0.023 3.977 14 N -0.293 5.293 15 C 0.435 3.565 16 O -0.441 6.441 17 N -0.372 5.372 18 C 0.008 3.992 19 C -0.117 4.117 20 H 0.116 0.884 21 C 0.045 3.955 22 H 0.082 0.918 23 O -0.360 6.360 24 C -0.193 4.193 25 C -0.152 4.152 26 C -0.119 4.119 27 H 0.110 0.890 28 C -0.018 4.018 29 N -0.139 5.139 30 H 0.076 0.924 31 H 0.062 0.938 32 H 0.074 0.926 33 H 0.185 0.815 34 H 0.178 0.822 35 H 0.240 0.760 36 H 0.094 0.906 37 H 0.114 0.886 38 H 0.224 0.776 39 H 0.096 0.904 40 H 0.090 0.910 41 H 0.087 0.913 42 H 0.095 0.905 43 H 0.091 0.909 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 18.680 -18.841 -7.872 27.675 hybrid contribution 1.125 0.350 -0.077 1.181 sum 19.805 -18.491 -7.949 28.237 Atomic orbital electron populations 1.69933 1.06030 1.27450 1.50025 1.24953 0.94984 0.99546 0.94689 0.86278 0.80084 0.82502 0.77677 1.19564 1.20727 1.20785 1.21311 0.94049 0.89396 1.51682 0.91253 1.19728 0.85631 0.81333 0.99215 1.49045 1.23105 1.19797 1.18389 1.22548 1.00319 0.90326 0.96719 1.21514 1.02044 1.06481 1.01688 1.18788 0.90633 0.93960 0.94351 1.41394 1.31468 1.25062 1.31329 1.15046 0.78875 0.80185 0.82389 1.90862 1.64126 1.62576 1.26570 1.47505 1.31939 1.27773 1.29971 1.21823 0.96048 0.85142 0.96234 1.22744 0.94631 0.98448 0.95884 0.88447 1.22475 0.92673 0.94633 0.85765 0.91839 1.86522 1.28913 1.70333 1.50193 1.23272 1.00061 0.97954 0.97981 1.22513 0.93575 0.97617 1.01455 1.22617 0.97371 0.94296 0.97618 0.89017 1.22224 0.97437 0.96103 0.86075 1.77318 1.03803 1.16131 1.16697 0.92429 0.93782 0.92550 0.81526 0.82221 0.75980 0.90597 0.88647 0.77597 0.90443 0.90974 0.91310 0.90537 0.90924 0.90999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.68 13.29 55.43 0.74 -24.94 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.91 21.66 29.54 -169.99 -5.02 16.64 16 4 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 5 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.53 -14.91 9.23 -34.44 -0.32 -15.23 16 8 H 0.07 2.05 7.81 -52.49 -0.41 1.64 16 9 C 0.26 6.72 6.26 -5.20 -0.03 6.69 16 10 N -0.32 -7.75 3.67 -62.56 -0.23 -7.98 16 11 C 0.05 1.06 11.44 -17.24 -0.20 0.87 16 12 C -0.29 -6.05 9.61 -39.83 -0.38 -6.43 16 13 C 0.28 5.94 8.11 -154.37 -1.25 4.68 16 14 N -0.64 -11.18 5.42 -15.51 -0.08 -11.26 16 15 C 0.73 12.41 8.49 -86.92 -0.74 11.67 16 16 O -0.57 -11.34 13.70 5.29 0.07 -11.27 16 17 N -0.63 -8.04 3.32 -177.28 -0.59 -8.63 16 18 C 0.13 1.41 6.42 -3.25 -0.02 1.39 16 19 C -0.10 -0.71 3.90 -88.53 -0.35 -1.06 16 20 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 21 C 0.10 0.56 4.12 -24.95 -0.10 0.46 16 22 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 23 O -0.55 -3.53 10.89 -35.23 -0.38 -3.91 16 24 C -0.15 -0.67 6.65 -24.56 -0.16 -0.83 16 25 C -0.11 -0.63 6.29 -24.95 -0.16 -0.78 16 26 C -0.10 -0.69 3.91 -88.51 -0.35 -1.04 16 27 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 28 C 0.11 0.97 6.32 -3.23 -0.02 0.95 16 29 N -0.31 -7.40 12.41 31.44 0.39 -7.01 16 30 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 31 H 0.04 1.20 8.14 -51.92 -0.42 0.78 16 32 H 0.06 1.44 8.07 -51.93 -0.42 1.02 16 33 H 0.17 2.85 8.06 -52.49 -0.42 2.43 16 34 H 0.16 3.34 5.91 -52.49 -0.31 3.03 16 35 H 0.40 5.95 7.23 -40.82 -0.30 5.65 16 36 H 0.08 0.90 7.92 -51.93 -0.41 0.49 16 37 H 0.10 1.10 5.75 -51.93 -0.30 0.81 16 38 H 0.38 0.91 9.12 45.56 0.42 1.33 16 39 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 40 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 41 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.08 0.49 7.18 -51.93 -0.37 0.11 16 43 H 0.07 0.65 7.13 -51.93 -0.37 0.28 16 44 H 0.07 0.62 7.03 -51.93 -0.36 0.25 16 LS Contribution 356.26 15.07 5.37 5.37 Total: -1.00 -34.84 356.26 -9.26 -44.10 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: -5.35 Total: 5.94 kcal Atomic # 6 Polarization: 7.12 SS G_CDS: -4.17 Total: 2.95 kcal Atomic # 7 Polarization: -60.05 SS G_CDS: 0.22 Total: -59.83 kcal Atomic # 8 Polarization: -14.87 SS G_CDS: -0.31 Total: -15.18 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -34.84 -9.26 -44.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887795673.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.919 kcal (2) G-P(sol) polarization free energy of solvation -34.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds