Wall clock time and date at job start Tue Mar 31 2020 12:33:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 120.00354 * 2 1 4 4 H 1.48496 * 109.47252 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46652 * 299.99908 * 3 2 1 6 6 H 1.48497 * 109.46826 * 59.99616 * 3 2 1 7 7 C 1.37880 * 119.99896 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00022 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99815 * 359.97438 * 7 2 1 10 10 N 1.46495 * 109.47227 * 179.97438 * 9 7 2 11 11 C 1.34970 * 125.97408 * 124.99947 * 10 9 7 12 12 C 1.35250 * 107.85895 * 180.02562 * 11 10 9 13 13 C 1.40402 * 107.86724 * 0.02562 * 12 11 10 14 14 N 1.40188 * 125.97319 * 179.97438 * 13 12 11 15 15 C 1.34771 * 120.00003 * 0.02562 * 14 13 12 16 16 O 1.21592 * 120.00119 * 0.02562 * 15 14 13 17 17 N 1.34781 * 120.00240 * 179.97438 * 15 14 13 18 18 C 1.47214 * 126.70268 * 179.97438 * 17 15 14 19 19 C 1.53778 * 106.37914 * 148.74451 * 18 17 15 20 20 H 1.08995 * 112.38518 * 256.84984 * 19 18 17 21 21 C 1.54320 * 109.06894 * 132.42630 * 19 18 17 22 22 H 1.09005 * 110.53505 * 103.41677 * 21 19 18 23 23 O 1.42904 * 110.53075 * 340.64454 * 21 19 18 24 24 C 1.55053 * 103.94001 * 222.03098 * 21 19 18 25 25 C 1.55059 * 102.10768 * 40.05773 * 24 21 19 26 26 C 1.54321 * 103.93695 * 319.94161 * 25 24 21 27 27 H 1.09005 * 111.69310 * 262.79703 * 26 25 24 28 28 C 1.47215 * 126.69779 * 0.02941 * 17 15 14 29 29 N 1.31214 * 108.05305 * 0.26311 * 13 12 11 30 30 H 0.97001 * 119.99395 * 0.02562 * 1 2 3 31 31 H 1.09007 * 109.46880 * 60.00352 * 9 7 2 32 32 H 1.08996 * 109.47651 * 300.00238 * 9 7 2 33 33 H 1.07998 * 126.07285 * 0.02562 * 11 10 9 34 34 H 1.07991 * 126.06345 * 180.02562 * 12 11 10 35 35 H 0.97006 * 120.00334 * 180.02562 * 14 13 12 36 36 H 1.09002 * 110.07388 * 29.51387 * 18 17 15 37 37 H 1.09001 * 110.07242 * 267.96571 * 18 17 15 38 38 H 0.96702 * 113.99902 * 179.97438 * 23 21 19 39 39 H 1.08996 * 110.90434 * 281.85830 * 24 21 19 40 40 H 1.08999 * 110.93295 * 158.26960 * 24 21 19 41 41 H 1.08996 * 110.53351 * 201.32661 * 25 24 21 42 42 H 1.08994 * 110.65663 * 78.61010 * 25 24 21 43 43 H 1.09002 * 110.07240 * 92.03073 * 28 17 15 44 44 H 1.08999 * 110.07570 * 330.48209 * 28 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0017 10 7 2.2029 -3.6127 0.0015 11 6 2.2425 -4.6220 0.8966 12 6 3.2612 -5.4423 0.5521 13 6 3.8691 -4.9144 -0.5982 14 7 4.9654 -5.4649 -1.2766 15 6 5.5302 -6.6047 -0.8314 16 8 5.0885 -7.1559 0.1584 17 7 6.5839 -7.1344 -1.4839 18 6 7.3104 -8.3647 -1.1295 19 6 7.8137 -8.9674 -2.4517 20 1 7.2138 -9.8180 -2.7750 21 6 9.3024 -9.3442 -2.2997 22 1 9.4132 -10.4211 -2.1724 23 8 9.8864 -8.6451 -1.1986 24 6 9.9420 -8.8859 -3.6358 25 6 9.2237 -7.5361 -3.8941 26 6 7.7631 -7.8063 -3.4756 27 1 7.1368 -8.0507 -4.3336 28 6 7.2338 -6.5948 -2.6897 29 7 3.2356 -3.8123 -0.9236 30 1 -0.4849 0.8401 -0.0004 31 1 0.6240 -2.5574 -0.8881 32 1 0.6246 -2.5563 0.8919 33 1 1.5787 -4.7517 1.7386 34 1 3.5549 -6.3433 1.0698 35 1 5.3176 -5.0255 -2.0665 36 1 6.6400 -9.0645 -0.6305 37 1 8.1542 -8.1274 -0.4815 38 1 10.8219 -8.8452 -1.0573 39 1 9.7297 -9.5981 -4.4331 40 1 11.0162 -8.7395 -3.5233 41 1 9.2762 -7.2711 -4.9500 42 1 9.6573 -6.7464 -3.2807 43 1 8.0595 -5.9410 -2.4088 44 1 6.5093 -6.0461 -3.2914 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000887795673.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:33:16 Heat of formation + Delta-G solvation = -8.438325 kcal Electronic energy + Delta-G solvation = -26589.433484 eV Core-core repulsion = 22735.870118 eV Total energy + Delta-G solvation = -3853.563366 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.30922 -41.53132 -40.11682 -37.17011 -36.25364 -35.31039 -34.91535 -32.81482 -31.17870 -30.86861 -30.13823 -28.49848 -26.48929 -25.43349 -24.51842 -22.60496 -21.98769 -21.70530 -20.63506 -20.18257 -19.16357 -18.68606 -18.20721 -17.88611 -17.35424 -17.13439 -16.73231 -16.25920 -16.21191 -15.70437 -15.54733 -14.82560 -14.69300 -14.39193 -14.31346 -13.98435 -13.87341 -13.83519 -13.61757 -13.30345 -13.09613 -12.93997 -12.73600 -12.31691 -12.21864 -12.09374 -11.91111 -11.74527 -11.65323 -11.61008 -11.42582 -11.39308 -11.07377 -10.72388 -10.69565 -9.89670 -9.68735 -9.05356 -8.33068 -6.47061 1.02356 1.07423 1.37121 1.38192 1.51698 1.65760 2.02522 2.34913 2.35626 2.86024 2.98439 3.19075 3.32002 3.70643 3.79958 3.95425 4.15714 4.20524 4.25117 4.27946 4.39804 4.46131 4.56482 4.63449 4.71523 4.81494 4.85148 4.89678 4.93017 4.99563 5.02185 5.04642 5.08823 5.17544 5.24067 5.35727 5.39140 5.48886 5.56733 5.76019 5.87189 5.94680 6.28307 6.60193 6.67777 7.02697 7.08026 7.22809 7.34336 8.74720 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.023079 B = 0.002426 C = 0.002286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.945338 B =11538.807792 C =12245.538328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.018 3.982 3 Si 0.973 3.027 4 H -0.275 1.275 5 H -0.272 1.272 6 H -0.270 1.270 7 C -0.547 4.547 8 H 0.051 0.949 9 C 0.272 3.728 10 N -0.344 5.344 11 C 0.059 3.941 12 C -0.294 4.294 13 C 0.283 3.717 14 N -0.636 5.636 15 C 0.728 3.272 16 O -0.602 6.602 17 N -0.627 5.627 18 C 0.126 3.874 19 C -0.096 4.096 20 H 0.109 0.891 21 C 0.106 3.894 22 H 0.079 0.921 23 O -0.575 6.575 24 C -0.147 4.147 25 C -0.112 4.112 26 C -0.095 4.095 27 H 0.104 0.896 28 C 0.096 3.904 29 N -0.346 5.346 30 H 0.273 0.727 31 H 0.022 0.978 32 H 0.060 0.940 33 H 0.203 0.797 34 H 0.164 0.836 35 H 0.417 0.583 36 H 0.059 0.941 37 H 0.089 0.911 38 H 0.392 0.608 39 H 0.090 0.910 40 H 0.083 0.917 41 H 0.080 0.920 42 H 0.066 0.934 43 H 0.077 0.923 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.879 -20.505 -8.873 31.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.182 4.182 3 Si 0.797 3.203 4 H -0.200 1.200 5 H -0.197 1.197 6 H -0.195 1.195 7 C -0.585 4.585 8 H 0.069 0.931 9 C 0.154 3.846 10 N -0.126 5.126 11 C -0.089 4.089 12 C -0.325 4.325 13 C 0.028 3.972 14 N -0.287 5.287 15 C 0.429 3.571 16 O -0.481 6.481 17 N -0.364 5.364 18 C 0.004 3.996 19 C -0.115 4.115 20 H 0.127 0.873 21 C 0.047 3.953 22 H 0.097 0.903 23 O -0.385 6.385 24 C -0.184 4.184 25 C -0.150 4.150 26 C -0.114 4.114 27 H 0.122 0.878 28 C -0.026 4.026 29 N -0.177 5.177 30 H 0.082 0.918 31 H 0.040 0.960 32 H 0.078 0.922 33 H 0.220 0.780 34 H 0.182 0.818 35 H 0.254 0.746 36 H 0.078 0.922 37 H 0.107 0.893 38 H 0.243 0.757 39 H 0.108 0.892 40 H 0.102 0.898 41 H 0.099 0.901 42 H 0.085 0.915 43 H 0.095 0.905 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 20.599 -19.460 -8.886 29.698 hybrid contribution 0.629 0.420 0.231 0.791 sum 21.228 -19.040 -8.656 29.800 Atomic orbital electron populations 1.70003 1.07180 1.28706 1.50030 1.25748 0.95869 1.02728 0.93898 0.85287 0.78344 0.78342 0.78351 1.20015 1.19728 1.19464 1.21421 0.93334 0.90995 1.52719 0.93082 1.19359 0.85640 0.81441 0.98191 1.48845 1.23645 1.20393 1.19727 1.23153 1.00315 0.88812 0.96655 1.21667 1.02293 1.06705 1.01856 1.19078 0.90804 0.93057 0.94257 1.41379 1.30556 1.25293 1.31510 1.15230 0.79647 0.79852 0.82347 1.90819 1.65550 1.63429 1.28261 1.47602 1.30457 1.28044 1.30310 1.21970 0.95090 0.84164 0.98403 1.22814 0.96269 0.98690 0.93716 0.87278 1.22519 0.91187 0.95406 0.86232 0.90267 1.86461 1.30498 1.70819 1.50699 1.23249 1.00494 0.97233 0.97449 1.22501 0.92388 0.98182 1.01916 1.22654 0.98562 0.92760 0.97402 0.87809 1.22532 0.97494 0.97508 0.85042 1.77241 1.04886 1.17726 1.17883 0.91821 0.95969 0.92230 0.77978 0.81848 0.74591 0.92250 0.89307 0.75659 0.89159 0.89813 0.90126 0.91545 0.90528 0.90366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.77 13.29 21.45 0.28 -52.49 16 2 C 0.02 1.00 5.46 84.66 0.46 1.46 16 3 Si 0.97 44.29 29.54 68.60 2.03 46.32 16 4 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 5 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 6 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 7 C -0.55 -31.51 9.23 25.60 0.24 -31.28 16 8 H 0.05 3.08 7.81 -2.91 -0.02 3.05 16 9 C 0.27 14.49 6.26 85.63 0.54 15.03 16 10 N -0.34 -16.86 3.67 -351.84 -1.29 -18.16 16 11 C 0.06 2.47 11.44 83.52 0.96 3.43 16 12 C -0.29 -12.50 9.61 22.11 0.21 -12.29 16 13 C 0.28 12.32 8.11 133.31 1.08 13.40 16 14 N -0.64 -22.27 5.42 -321.24 -1.74 -24.01 16 15 C 0.73 24.82 8.49 179.05 1.52 26.34 16 16 O -0.60 -24.56 13.70 -4.00 -0.05 -24.61 16 17 N -0.63 -15.74 3.32 -833.06 -2.77 -18.51 16 18 C 0.13 2.67 6.42 86.51 0.56 3.23 16 19 C -0.10 -1.22 3.90 -9.44 -0.04 -1.25 16 20 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 21 C 0.11 0.88 4.12 31.75 0.13 1.01 16 22 H 0.08 0.44 8.14 -2.38 -0.02 0.42 16 23 O -0.58 -6.36 10.89 -148.98 -1.62 -7.99 16 24 C -0.15 -0.78 6.65 32.00 0.21 -0.57 16 25 C -0.11 -0.93 6.29 31.75 0.20 -0.74 16 26 C -0.09 -1.10 3.91 -9.43 -0.04 -1.14 16 27 H 0.10 1.00 8.14 -2.38 -0.02 0.98 16 28 C 0.10 1.67 6.32 86.52 0.55 2.22 16 29 N -0.35 -16.96 12.41 -54.44 -0.68 -17.64 16 30 H 0.27 14.55 8.31 -92.71 -0.77 13.78 16 31 H 0.02 1.26 8.14 -2.38 -0.02 1.24 16 32 H 0.06 3.09 8.07 -2.39 -0.02 3.07 16 33 H 0.20 6.66 8.06 -2.91 -0.02 6.64 16 34 H 0.16 6.88 5.91 -2.92 -0.02 6.87 16 35 H 0.42 12.24 7.23 -92.70 -0.67 11.57 16 36 H 0.06 1.44 7.92 -2.39 -0.02 1.42 16 37 H 0.09 2.04 5.75 -2.39 -0.01 2.03 16 38 H 0.39 1.15 9.12 -74.06 -0.68 0.48 16 39 H 0.09 0.30 8.14 -2.39 -0.02 0.28 16 40 H 0.08 0.30 8.14 -2.39 -0.02 0.28 16 41 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 42 H 0.07 0.71 7.18 -2.39 -0.02 0.69 16 43 H 0.08 1.29 7.13 -2.39 -0.02 1.28 16 44 H 0.08 1.25 7.03 -2.39 -0.02 1.23 16 Total: -1.00 -75.86 356.26 0.44 -75.42 By element: Atomic # 1 Polarization: 23.10 SS G_CDS: -0.30 Total: 22.81 kcal Atomic # 6 Polarization: 12.28 SS G_CDS: 6.58 Total: 18.86 kcal Atomic # 7 Polarization: -124.61 SS G_CDS: -6.19 Total: -130.80 kcal Atomic # 8 Polarization: -30.92 SS G_CDS: -1.68 Total: -32.60 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Total: -75.86 0.44 -75.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887795673.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.980 kcal (2) G-P(sol) polarization free energy of solvation -75.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds