Wall clock time and date at job start Tue Mar 31 2020 12:14:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00187 * 2 1 4 4 H 1.48496 * 109.46785 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47025 * 300.00392 * 3 2 1 6 6 H 1.48498 * 109.46692 * 60.00365 * 3 2 1 7 7 C 1.37879 * 119.99506 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99452 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00258 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47055 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.47127 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47127 * 180.02562 * 11 10 9 13 13 C 1.50696 * 109.47055 * 179.97438 * 12 11 10 14 14 O 1.20827 * 120.00253 * 0.02562 * 13 12 11 15 15 O 1.34237 * 119.99997 * 179.97438 * 13 12 11 16 16 C 1.45198 * 116.99991 * 180.02562 * 15 13 12 17 17 H 1.09005 * 109.25254 * 30.52978 * 16 15 13 18 18 C 1.50633 * 109.25323 * 271.09897 * 16 15 13 19 19 C 1.38914 * 117.74292 * 42.22936 * 18 16 15 20 20 C 1.37932 * 120.53958 * 179.75744 * 19 18 16 21 21 C 1.38262 * 119.77341 * 0.02562 * 20 19 18 22 22 C 1.37929 * 119.77619 * 0.11138 * 21 20 19 23 23 C 1.37658 * 122.57173 * 222.16082 * 18 16 15 24 24 C 1.50637 * 122.56721 * 0.37561 * 23 18 16 25 25 C 1.52736 * 110.59079 * 342.46686 * 24 23 18 26 26 C 1.52734 * 109.25362 * 150.00023 * 16 15 13 27 27 H 1.08999 * 109.68276 * 291.07946 * 26 16 15 28 28 F 1.39899 * 109.68469 * 51.64042 * 26 16 15 29 29 H 0.96999 * 119.99910 * 359.97438 * 1 2 3 30 30 H 1.08996 * 109.47197 * 60.00848 * 9 7 2 31 31 H 1.09001 * 109.47328 * 300.00375 * 9 7 2 32 32 H 1.09001 * 109.47502 * 60.00512 * 10 9 7 33 33 H 1.09001 * 109.47289 * 300.00308 * 10 9 7 34 34 H 1.09001 * 109.47002 * 299.99574 * 11 10 9 35 35 H 1.08993 * 109.46955 * 60.00011 * 11 10 9 36 36 H 1.09001 * 109.47289 * 299.99953 * 12 11 10 37 37 H 1.09004 * 109.47261 * 59.99697 * 12 11 10 38 38 H 1.07991 * 119.72827 * 359.75310 * 19 18 16 39 39 H 1.08004 * 120.11322 * 180.02562 * 20 19 18 40 40 H 1.08001 * 120.11259 * 180.02562 * 21 20 19 41 41 H 1.07997 * 119.73279 * 179.97438 * 22 21 20 42 42 H 1.09005 * 109.25650 * 222.17915 * 24 23 18 43 43 H 1.09004 * 109.22316 * 102.72979 * 24 23 18 44 44 H 1.09007 * 109.68096 * 291.33547 * 25 24 23 45 45 H 1.09001 * 109.71723 * 170.80033 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3462 -0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 6 1.4800 -4.9871 -0.0012 12 6 2.4742 -6.1501 -0.0005 13 6 1.7207 -7.4551 -0.0005 14 8 0.5124 -7.4551 -0.0015 15 8 2.3918 -8.6177 -0.0005 16 6 1.6010 -9.8354 -0.0011 17 1 0.6620 -9.6539 -0.5242 18 6 1.3070 -10.2374 1.4205 19 6 0.9511 -9.2361 2.3152 20 6 0.6649 -9.5402 3.6298 21 6 0.7329 -10.8519 4.0616 22 6 1.0888 -11.8472 3.1755 23 6 1.3778 -11.5429 1.8512 24 6 1.7631 -12.6780 0.9389 25 6 1.6261 -12.2614 -0.5242 26 6 2.3742 -10.9377 -0.7220 27 1 2.4370 -10.7069 -1.7854 28 9 3.6617 -11.0393 -0.1842 29 1 -0.4850 0.8400 0.0004 30 1 0.6240 -2.5568 -0.8903 31 1 0.6245 -2.5571 0.8896 32 1 2.8717 -3.6045 0.8895 33 1 2.8718 -3.6044 -0.8905 34 1 0.8531 -5.0451 0.8886 35 1 0.8537 -5.0446 -0.8913 36 1 3.1015 -6.0923 -0.8901 37 1 3.1003 -6.0924 0.8899 38 1 0.8983 -8.2113 1.9788 39 1 0.3885 -8.7564 4.3195 40 1 0.5095 -11.0963 5.0896 41 1 1.1421 -12.8715 3.5136 42 1 1.1128 -13.5312 1.1321 43 1 2.7968 -12.9621 1.1363 44 1 0.5727 -12.1282 -0.7709 45 1 2.0595 -13.0278 -1.1669 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893720947.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:19 Heat of formation + Delta-G solvation = -155.661504 kcal Electronic energy + Delta-G solvation = -26470.774270 eV Core-core repulsion = 22558.614115 eV Total energy + Delta-G solvation = -3912.160155 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -48.71702 -42.07824 -40.44104 -37.98697 -36.68243 -36.26137 -34.69426 -33.06570 -31.65790 -31.16142 -29.77006 -27.72447 -25.31208 -24.29700 -23.82766 -23.13736 -22.05423 -21.50327 -20.56480 -18.89217 -18.44951 -18.40923 -17.85879 -17.28522 -16.85632 -16.66941 -16.46008 -16.27877 -15.97318 -15.56898 -15.36355 -15.00424 -14.59642 -14.49035 -14.24023 -13.88746 -13.66506 -13.56374 -13.43051 -13.37807 -13.32789 -12.87694 -12.73522 -12.68707 -12.34872 -12.28179 -12.23786 -12.22321 -11.99073 -11.78549 -11.57138 -11.42546 -11.31430 -11.21562 -11.04705 -10.56306 -9.84457 -9.64090 -8.19925 -6.31512 0.20442 0.33854 1.06294 1.40184 1.40712 1.51715 1.54534 2.41270 2.71398 3.13233 3.18844 3.26191 3.40887 3.61792 3.70421 3.87368 3.87547 3.94441 4.02717 4.03815 4.12030 4.17275 4.35236 4.48814 4.50684 4.57765 4.58862 4.73257 4.77683 4.79709 4.83499 4.94060 4.97028 5.03815 5.10926 5.15756 5.22181 5.29545 5.35007 5.44945 5.50267 5.52234 5.55046 5.75986 5.86955 5.97898 6.24523 6.61104 6.87009 7.38135 8.92507 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.023062 B = 0.002281 C = 0.002158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.820212 B =12270.003765 C =12969.576270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.006 4.006 3 Si 0.968 3.032 4 H -0.258 1.258 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.540 4.540 8 H 0.065 0.935 9 C 0.019 3.981 10 C -0.097 4.097 11 C -0.098 4.098 12 C -0.105 4.105 13 C 0.463 3.537 14 O -0.530 6.530 15 O -0.345 6.345 16 C 0.097 3.903 17 H 0.104 0.896 18 C -0.122 4.122 19 C -0.131 4.131 20 C -0.138 4.138 21 C -0.112 4.112 22 C -0.124 4.124 23 C -0.069 4.069 24 C -0.084 4.084 25 C -0.139 4.139 26 C 0.099 3.901 27 H 0.117 0.883 28 F -0.211 7.211 29 H 0.263 0.737 30 H -0.012 1.012 31 H -0.014 1.014 32 H 0.061 0.939 33 H 0.064 0.936 34 H 0.049 0.951 35 H 0.054 0.946 36 H 0.131 0.869 37 H 0.124 0.876 38 H 0.100 0.900 39 H 0.130 0.870 40 H 0.151 0.849 41 H 0.156 0.844 42 H 0.110 0.890 43 H 0.089 0.911 44 H 0.098 0.902 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.270 -31.920 2.161 32.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.203 4.203 3 Si 0.792 3.208 4 H -0.182 1.182 5 H -0.204 1.204 6 H -0.205 1.205 7 C -0.578 4.578 8 H 0.083 0.917 9 C -0.018 4.018 10 C -0.134 4.134 11 C -0.136 4.136 12 C -0.142 4.142 13 C 0.308 3.692 14 O -0.420 6.420 15 O -0.262 6.262 16 C 0.042 3.958 17 H 0.122 0.878 18 C -0.122 4.122 19 C -0.149 4.149 20 C -0.156 4.156 21 C -0.129 4.129 22 C -0.142 4.142 23 C -0.069 4.069 24 C -0.120 4.120 25 C -0.177 4.177 26 C 0.063 3.937 27 H 0.135 0.865 28 F -0.192 7.192 29 H 0.072 0.928 30 H 0.006 0.994 31 H 0.005 0.995 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.068 0.932 35 H 0.073 0.927 36 H 0.149 0.851 37 H 0.142 0.858 38 H 0.118 0.882 39 H 0.148 0.852 40 H 0.168 0.832 41 H 0.173 0.827 42 H 0.128 0.872 43 H 0.107 0.893 44 H 0.116 0.884 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 4.805 -31.857 2.171 32.290 hybrid contribution -0.348 1.609 0.183 1.656 sum 4.457 -30.248 2.354 30.665 Atomic orbital electron populations 1.70129 1.07994 1.27689 1.51977 1.26067 0.95782 1.03661 0.94825 0.85351 0.79184 0.78529 0.77698 1.18211 1.20433 1.20489 1.21776 0.93737 0.92242 1.50089 0.91674 1.19044 0.94626 0.93551 0.94547 1.21444 0.97932 0.92417 1.01607 1.21343 0.97295 0.93009 1.01911 1.21535 0.99030 0.85713 1.07922 1.24368 0.87323 0.86738 0.70732 1.90674 1.16809 1.87993 1.46495 1.86690 1.41284 1.14505 1.83683 1.22281 0.96235 0.82589 0.94725 0.87796 1.19748 1.03257 0.94352 0.94830 1.21353 0.99643 0.98947 0.94946 1.21312 1.00784 0.98240 0.95306 1.21484 0.98178 0.92189 1.01086 1.21524 0.99487 1.00955 0.92239 1.19917 0.97884 0.93162 0.95909 1.20575 1.03547 0.95697 0.92210 1.22251 1.02324 0.94961 0.98115 1.21882 0.78314 0.95110 0.98405 0.86482 1.92814 1.40800 1.97107 1.88448 0.92841 0.99364 0.99526 0.92052 0.91779 0.93166 0.92736 0.85086 0.85835 0.88196 0.85222 0.83161 0.82652 0.87170 0.89309 0.88396 0.86353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.71 13.29 21.45 0.28 -58.43 16 2 C -0.01 -0.36 5.46 84.65 0.46 0.10 16 3 Si 0.97 44.86 29.54 68.60 2.03 46.89 16 4 H -0.26 -11.27 7.11 99.48 0.71 -10.57 16 5 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 6 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 7 C -0.54 -31.23 9.11 25.60 0.23 -31.00 16 8 H 0.07 3.55 7.74 -2.91 -0.02 3.53 16 9 C 0.02 1.05 4.97 29.85 0.15 1.20 16 10 C -0.10 -3.89 5.15 30.60 0.16 -3.73 16 11 C -0.10 -3.42 4.50 30.60 0.14 -3.29 16 12 C -0.10 -2.76 5.81 29.85 0.17 -2.58 16 13 C 0.46 13.43 6.32 71.23 0.45 13.88 16 14 O -0.53 -18.40 13.77 21.96 0.30 -18.10 16 15 O -0.34 -9.14 9.45 -51.49 -0.49 -9.63 16 16 C 0.10 2.19 2.39 29.74 0.07 2.26 16 17 H 0.10 2.42 7.16 -2.38 -0.02 2.40 16 18 C -0.12 -2.91 5.51 -19.86 -0.11 -3.02 16 19 C -0.13 -3.57 9.04 22.36 0.20 -3.37 16 20 C -0.14 -3.17 10.05 22.20 0.22 -2.95 16 21 C -0.11 -1.95 10.05 22.20 0.22 -1.73 16 22 C -0.12 -1.96 9.61 22.36 0.21 -1.74 16 23 C -0.07 -1.25 5.71 -19.86 -0.11 -1.36 16 24 C -0.08 -0.92 5.32 29.74 0.16 -0.76 16 25 C -0.14 -1.32 5.85 30.62 0.18 -1.14 16 26 C 0.10 1.59 3.91 30.62 0.12 1.71 16 27 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 28 F -0.21 -4.49 16.01 44.97 0.72 -3.77 16 29 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 30 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 31 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 32 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 33 H 0.06 2.40 8.14 -2.39 -0.02 2.39 16 34 H 0.05 1.89 8.10 -2.39 -0.02 1.87 16 35 H 0.05 2.02 8.10 -2.39 -0.02 2.00 16 36 H 0.13 2.80 8.14 -2.39 -0.02 2.78 16 37 H 0.12 2.82 8.14 -2.38 -0.02 2.80 16 38 H 0.10 3.13 4.85 -2.92 -0.01 3.12 16 39 H 0.13 2.66 8.06 -2.91 -0.02 2.64 16 40 H 0.15 1.74 8.06 -2.91 -0.02 1.72 16 41 H 0.16 1.39 8.05 -2.91 -0.02 1.37 16 42 H 0.11 0.65 8.13 -2.38 -0.02 0.63 16 43 H 0.09 0.99 7.84 -2.38 -0.02 0.97 16 44 H 0.10 0.78 8.10 -2.38 -0.02 0.76 16 45 H 0.12 0.53 8.14 -2.39 -0.02 0.51 16 Total: -1.00 -75.45 369.77 6.75 -68.70 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: 0.97 Total: 11.86 kcal Atomic # 6 Polarization: -40.45 SS G_CDS: 2.93 Total: -37.52 kcal Atomic # 7 Polarization: -58.71 SS G_CDS: 0.28 Total: -58.43 kcal Atomic # 8 Polarization: -27.54 SS G_CDS: -0.18 Total: -27.72 kcal Atomic # 9 Polarization: -4.49 SS G_CDS: 0.72 Total: -3.77 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -75.45 6.75 -68.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893720947.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.960 kcal (2) G-P(sol) polarization free energy of solvation -75.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds