Wall clock time and date at job start Tue Mar 31 2020 12:14:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 120.00168 * 2 1 4 4 H 1.48507 * 109.47345 * 240.00037 * 3 2 1 5 5 H 1.48502 * 109.47317 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47211 * 120.00274 * 3 2 1 7 7 C 1.37885 * 119.99871 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99776 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99923 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.46969 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.46953 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.46952 * 180.02562 * 11 10 9 13 13 C 1.50696 * 109.47298 * 180.02562 * 12 11 10 14 14 O 1.20833 * 119.99655 * 359.97438 * 13 12 11 15 15 O 1.34222 * 120.00432 * 180.27351 * 13 12 11 16 16 C 1.45201 * 117.00137 * 179.71953 * 15 13 12 17 17 H 1.08998 * 109.25071 * 330.53164 * 16 15 13 18 18 C 1.50631 * 109.24973 * 90.00268 * 16 15 13 19 19 C 1.38910 * 117.75543 * 318.00839 * 18 16 15 20 20 C 1.37932 * 120.54642 * 180.21928 * 19 18 16 21 21 C 1.38265 * 119.77209 * 0.05727 * 20 19 18 22 22 C 1.37932 * 119.77109 * 359.88839 * 21 20 19 23 23 C 1.37667 * 122.56167 * 138.06353 * 18 16 15 24 24 C 1.50631 * 122.56575 * 359.25656 * 23 18 16 25 25 C 1.52727 * 110.58698 * 17.80082 * 24 23 18 26 26 C 1.52738 * 109.25311 * 211.09916 * 16 15 13 27 27 H 1.09001 * 109.68388 * 308.34532 * 26 16 15 28 28 F 1.39901 * 109.67817 * 68.89364 * 26 16 15 29 29 H 0.96999 * 119.99800 * 359.97438 * 1 2 3 30 30 H 1.09008 * 109.46880 * 59.99982 * 9 7 2 31 31 H 1.08998 * 109.47115 * 300.00188 * 9 7 2 32 32 H 1.09000 * 109.47439 * 60.00015 * 10 9 7 33 33 H 1.08998 * 109.47408 * 300.00073 * 10 9 7 34 34 H 1.08994 * 109.47101 * 60.00033 * 11 10 9 35 35 H 1.09006 * 109.46726 * 299.99825 * 11 10 9 36 36 H 1.09000 * 109.47764 * 59.99520 * 12 11 10 37 37 H 1.09006 * 109.46938 * 299.99298 * 12 11 10 38 38 H 1.08001 * 119.72927 * 0.23728 * 19 18 16 39 39 H 1.07999 * 120.11479 * 180.02562 * 20 19 18 40 40 H 1.08002 * 120.11826 * 179.85844 * 21 20 19 41 41 H 1.07998 * 119.73039 * 179.97438 * 22 21 20 42 42 H 1.09003 * 109.25068 * 138.08459 * 24 23 18 43 43 H 1.09001 * 109.25497 * 257.55140 * 24 23 18 44 44 H 1.08999 * 109.68412 * 68.60852 * 25 24 23 45 45 H 1.09004 * 109.68297 * 189.13045 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 6 1.4801 -4.9872 -0.0025 12 6 2.4743 -6.1501 -0.0031 13 6 1.7209 -7.4551 -0.0044 14 8 0.5125 -7.4551 -0.0043 15 8 2.3919 -8.6176 0.0004 16 6 1.6010 -9.8353 0.0052 17 1 0.6538 -9.6466 0.5105 18 6 1.3309 -10.2575 -1.4153 19 6 0.9950 -9.2688 -2.3313 20 6 0.7315 -9.5916 -3.6462 21 6 0.8008 -10.9101 -4.0566 22 6 1.1352 -11.8933 -3.1488 23 6 1.4044 -11.5698 -1.8249 24 6 1.7770 -12.6911 -0.8907 25 6 1.6173 -12.2538 0.5639 26 6 2.3621 -10.9272 0.7545 27 1 3.3720 -11.0122 0.3533 28 9 2.4205 -10.6110 2.1161 29 1 -0.4850 0.8401 0.0004 30 1 0.6239 -2.5567 -0.8904 31 1 0.6247 -2.5571 0.8896 32 1 2.8726 -3.6048 0.8877 33 1 2.8712 -3.6040 -0.8922 34 1 0.8531 -5.0442 -0.8922 35 1 0.8539 -5.0455 0.8878 36 1 3.1011 -6.0928 0.8868 37 1 3.1009 -6.0919 -0.8932 38 1 0.9400 -8.2387 -2.0114 39 1 0.4714 -8.8172 -4.3526 40 1 0.5933 -11.1694 -5.0843 41 1 1.1888 -12.9230 -3.4700 42 1 1.1306 -13.5477 -1.0815 43 1 2.8139 -12.9769 -1.0677 44 1 0.5602 -12.1175 0.7923 45 1 2.0407 -13.0112 1.2236 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893720950.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:26 Heat of formation + Delta-G solvation = -143.127683 kcal Electronic energy + Delta-G solvation = -26341.243253 eV Core-core repulsion = 22429.626605 eV Total energy + Delta-G solvation = -3911.616648 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -48.01335 -41.15323 -39.70775 -36.95433 -35.77557 -34.99770 -32.74939 -32.22959 -30.39977 -29.99923 -28.86264 -25.98015 -24.27834 -23.17697 -22.89861 -22.25355 -20.62469 -20.22070 -20.04084 -17.84218 -17.55599 -16.95230 -16.50470 -16.17895 -15.93301 -15.82787 -15.46021 -14.88192 -14.62236 -14.56641 -14.46871 -14.32072 -13.54369 -13.33051 -13.09301 -13.00129 -12.71549 -12.65450 -12.33636 -12.05373 -11.91009 -11.76881 -11.68929 -11.54096 -11.21260 -11.04959 -10.99667 -10.72534 -10.60044 -10.56908 -10.47173 -10.35989 -9.65574 -9.29435 -9.11696 -9.03539 -8.97813 -8.31457 -5.96413 -3.99059 0.91314 1.04889 2.18870 2.47998 3.35196 3.39570 3.41800 3.42427 3.80783 3.92771 4.09569 4.29247 4.40762 4.46504 4.48521 4.61858 4.68286 4.85732 4.88290 5.00755 5.06463 5.14630 5.24472 5.26104 5.28972 5.37891 5.39037 5.42808 5.55277 5.64823 5.69356 5.74983 6.03824 6.12471 6.16601 6.17900 6.23191 6.31162 6.45460 6.64307 6.75343 6.93272 7.15413 7.70897 7.72021 7.86568 8.04197 8.45902 9.08254 9.64692 11.14911 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.020829 B = 0.002313 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.954694 B =12103.964769 C =13047.847571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.522 4.522 8 H 0.054 0.946 9 C 0.021 3.979 10 C -0.110 4.110 11 C -0.108 4.108 12 C -0.112 4.112 13 C 0.459 3.541 14 O -0.499 6.499 15 O -0.347 6.347 16 C 0.105 3.895 17 H 0.107 0.893 18 C -0.099 4.099 19 C -0.098 4.098 20 C -0.119 4.119 21 C -0.110 4.110 22 C -0.123 4.123 23 C -0.071 4.071 24 C -0.080 4.080 25 C -0.142 4.142 26 C 0.101 3.899 27 H 0.101 0.899 28 F -0.202 7.202 29 H 0.261 0.739 30 H 0.016 0.984 31 H 0.016 0.984 32 H 0.050 0.950 33 H 0.049 0.951 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.106 0.894 37 H 0.104 0.896 38 H 0.124 0.876 39 H 0.127 0.873 40 H 0.125 0.875 41 H 0.125 0.875 42 H 0.087 0.913 43 H 0.085 0.915 44 H 0.082 0.918 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.693 -30.317 -4.326 30.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.560 4.560 8 H 0.073 0.927 9 C -0.017 4.017 10 C -0.148 4.148 11 C -0.146 4.146 12 C -0.150 4.150 13 C 0.303 3.697 14 O -0.386 6.386 15 O -0.264 6.264 16 C 0.050 3.950 17 H 0.125 0.875 18 C -0.099 4.099 19 C -0.116 4.116 20 C -0.137 4.137 21 C -0.128 4.128 22 C -0.141 4.141 23 C -0.071 4.071 24 C -0.116 4.116 25 C -0.180 4.180 26 C 0.064 3.936 27 H 0.119 0.881 28 F -0.183 7.183 29 H 0.070 0.930 30 H 0.034 0.966 31 H 0.035 0.965 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.124 0.876 37 H 0.122 0.878 38 H 0.142 0.858 39 H 0.145 0.855 40 H 0.143 0.857 41 H 0.143 0.857 42 H 0.106 0.894 43 H 0.103 0.897 44 H 0.101 0.899 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 4.161 -30.215 -4.285 30.799 hybrid contribution 0.230 1.046 -0.016 1.071 sum 4.390 -29.168 -4.302 29.809 Atomic orbital electron populations 1.69962 1.06063 1.26670 1.50796 1.25041 0.94848 0.99254 0.95402 0.86661 0.79570 0.83184 0.78584 1.20261 1.21320 1.20254 1.21236 0.92977 0.91146 1.50622 0.92742 1.19089 0.94008 0.91204 0.97350 1.21651 0.99158 0.93493 1.00450 1.21589 0.97055 0.92663 1.03280 1.21658 1.00022 0.87593 1.05705 1.24323 0.87842 0.86001 0.71563 1.90688 1.15496 1.87499 1.44870 1.86668 1.41249 1.14331 1.84178 1.21928 0.96420 0.82806 0.93842 0.87538 1.19521 1.02625 0.93443 0.94331 1.21321 0.97310 0.99627 0.93374 1.21149 0.99919 0.96789 0.95836 1.21164 0.98974 0.93016 0.99658 1.21094 1.00854 0.99613 0.92511 1.19529 0.99674 0.93044 0.94848 1.20472 1.02875 0.96391 0.91911 1.22162 1.02305 0.95703 0.97827 1.21581 1.01740 0.93403 0.76833 0.88133 1.92864 1.97808 1.94131 1.33463 0.92963 0.96569 0.96541 0.93149 0.93192 0.91533 0.91447 0.87629 0.87769 0.85778 0.85494 0.85685 0.85734 0.89429 0.89663 0.89910 0.88885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.43 13.29 55.43 0.74 -26.70 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.52 -14.94 9.11 -34.44 -0.31 -15.26 16 8 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 10 C -0.11 -2.22 5.15 -26.73 -0.14 -2.36 16 11 C -0.11 -1.87 4.50 -26.73 -0.12 -1.99 16 12 C -0.11 -1.52 5.81 -27.89 -0.16 -1.68 16 13 C 0.46 6.67 6.32 36.00 0.23 6.90 16 14 O -0.50 -8.51 13.89 -18.76 -0.26 -8.77 16 15 O -0.35 -4.57 9.61 -39.24 -0.38 -4.95 16 16 C 0.11 1.23 2.33 -28.05 -0.07 1.16 16 17 H 0.11 1.38 7.12 -51.93 -0.37 1.01 16 18 C -0.10 -1.10 5.58 -104.62 -0.58 -1.68 16 19 C -0.10 -1.20 9.07 -39.44 -0.36 -1.56 16 20 C -0.12 -1.22 10.05 -39.68 -0.40 -1.62 16 21 C -0.11 -0.93 10.05 -39.68 -0.40 -1.33 16 22 C -0.12 -0.96 9.61 -39.44 -0.38 -1.34 16 23 C -0.07 -0.61 5.74 -104.61 -0.60 -1.21 16 24 C -0.08 -0.45 5.67 -28.06 -0.16 -0.61 16 25 C -0.14 -0.91 5.72 -26.70 -0.15 -1.06 16 26 C 0.10 0.93 3.56 -26.69 -0.09 0.83 16 27 H 0.10 0.81 8.10 -51.93 -0.42 0.39 16 28 F -0.20 -2.34 17.10 2.25 0.04 -2.30 16 29 H 0.26 7.53 8.31 -40.82 -0.34 7.20 16 30 H 0.02 0.45 8.14 -51.92 -0.42 0.02 16 31 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.07 1.19 8.10 -51.93 -0.42 0.77 16 35 H 0.07 1.23 8.10 -51.93 -0.42 0.81 16 36 H 0.11 1.27 8.14 -51.93 -0.42 0.85 16 37 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.12 1.71 4.97 -52.49 -0.26 1.45 16 39 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 40 H 0.13 0.76 8.06 -52.49 -0.42 0.33 16 41 H 0.12 0.65 8.05 -52.49 -0.42 0.23 16 42 H 0.09 0.35 8.13 -51.93 -0.42 -0.07 16 43 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.08 0.56 8.10 -51.93 -0.42 0.14 16 45 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 371.41 15.07 5.60 5.60 Total: -1.00 -33.25 371.41 -10.15 -43.39 By element: Atomic # 1 Polarization: 4.68 SS G_CDS: -6.93 Total: -2.25 kcal Atomic # 6 Polarization: -16.95 SS G_CDS: -3.93 Total: -20.88 kcal Atomic # 7 Polarization: -27.43 SS G_CDS: 0.74 Total: -26.70 kcal Atomic # 8 Polarization: -13.08 SS G_CDS: -0.64 Total: -13.72 kcal Atomic # 9 Polarization: -2.34 SS G_CDS: 0.04 Total: -2.30 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.25 -10.15 -43.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893720950.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.737 kcal (2) G-P(sol) polarization free energy of solvation -33.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds