Wall clock time and date at job start Tue Mar 31 2020 12:14:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 120.00168 * 2 1 4 4 H 1.48507 * 109.47345 * 240.00037 * 3 2 1 5 5 H 1.48502 * 109.47317 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47211 * 120.00274 * 3 2 1 7 7 C 1.37885 * 119.99871 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99776 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99923 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.46969 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.46953 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.46952 * 180.02562 * 11 10 9 13 13 C 1.50696 * 109.47298 * 180.02562 * 12 11 10 14 14 O 1.20833 * 119.99655 * 359.97438 * 13 12 11 15 15 O 1.34222 * 120.00432 * 180.27351 * 13 12 11 16 16 C 1.45201 * 117.00137 * 179.71953 * 15 13 12 17 17 H 1.08998 * 109.25071 * 330.53164 * 16 15 13 18 18 C 1.50631 * 109.24973 * 90.00268 * 16 15 13 19 19 C 1.38910 * 117.75543 * 318.00839 * 18 16 15 20 20 C 1.37932 * 120.54642 * 180.21928 * 19 18 16 21 21 C 1.38265 * 119.77209 * 0.05727 * 20 19 18 22 22 C 1.37932 * 119.77109 * 359.88839 * 21 20 19 23 23 C 1.37667 * 122.56167 * 138.06353 * 18 16 15 24 24 C 1.50631 * 122.56575 * 359.25656 * 23 18 16 25 25 C 1.52727 * 110.58698 * 17.80082 * 24 23 18 26 26 C 1.52738 * 109.25311 * 211.09916 * 16 15 13 27 27 H 1.09001 * 109.68388 * 308.34532 * 26 16 15 28 28 F 1.39901 * 109.67817 * 68.89364 * 26 16 15 29 29 H 0.96999 * 119.99800 * 359.97438 * 1 2 3 30 30 H 1.09008 * 109.46880 * 59.99982 * 9 7 2 31 31 H 1.08998 * 109.47115 * 300.00188 * 9 7 2 32 32 H 1.09000 * 109.47439 * 60.00015 * 10 9 7 33 33 H 1.08998 * 109.47408 * 300.00073 * 10 9 7 34 34 H 1.08994 * 109.47101 * 60.00033 * 11 10 9 35 35 H 1.09006 * 109.46726 * 299.99825 * 11 10 9 36 36 H 1.09000 * 109.47764 * 59.99520 * 12 11 10 37 37 H 1.09006 * 109.46938 * 299.99298 * 12 11 10 38 38 H 1.08001 * 119.72927 * 0.23728 * 19 18 16 39 39 H 1.07999 * 120.11479 * 180.02562 * 20 19 18 40 40 H 1.08002 * 120.11826 * 179.85844 * 21 20 19 41 41 H 1.07998 * 119.73039 * 179.97438 * 22 21 20 42 42 H 1.09003 * 109.25068 * 138.08459 * 24 23 18 43 43 H 1.09001 * 109.25497 * 257.55140 * 24 23 18 44 44 H 1.08999 * 109.68412 * 68.60852 * 25 24 23 45 45 H 1.09004 * 109.68297 * 189.13045 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 6 1.4801 -4.9872 -0.0025 12 6 2.4743 -6.1501 -0.0031 13 6 1.7209 -7.4551 -0.0044 14 8 0.5125 -7.4551 -0.0043 15 8 2.3919 -8.6176 0.0004 16 6 1.6010 -9.8353 0.0052 17 1 0.6538 -9.6466 0.5105 18 6 1.3309 -10.2575 -1.4153 19 6 0.9950 -9.2688 -2.3313 20 6 0.7315 -9.5916 -3.6462 21 6 0.8008 -10.9101 -4.0566 22 6 1.1352 -11.8933 -3.1488 23 6 1.4044 -11.5698 -1.8249 24 6 1.7770 -12.6911 -0.8907 25 6 1.6173 -12.2538 0.5639 26 6 2.3621 -10.9272 0.7545 27 1 3.3720 -11.0122 0.3533 28 9 2.4205 -10.6110 2.1161 29 1 -0.4850 0.8401 0.0004 30 1 0.6239 -2.5567 -0.8904 31 1 0.6247 -2.5571 0.8896 32 1 2.8726 -3.6048 0.8877 33 1 2.8712 -3.6040 -0.8922 34 1 0.8531 -5.0442 -0.8922 35 1 0.8539 -5.0455 0.8878 36 1 3.1011 -6.0928 0.8868 37 1 3.1009 -6.0919 -0.8932 38 1 0.9400 -8.2387 -2.0114 39 1 0.4714 -8.8172 -4.3526 40 1 0.5933 -11.1694 -5.0843 41 1 1.1888 -12.9230 -3.4700 42 1 1.1306 -13.5477 -1.0815 43 1 2.8139 -12.9769 -1.0677 44 1 0.5602 -12.1175 0.7923 45 1 2.0407 -13.0112 1.2236 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893720950.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:25 Heat of formation + Delta-G solvation = -159.250679 kcal Electronic energy + Delta-G solvation = -26341.942398 eV Core-core repulsion = 22429.626605 eV Total energy + Delta-G solvation = -3912.315793 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -48.83545 -42.14386 -40.55278 -38.01941 -36.71123 -36.42692 -34.70085 -33.06055 -31.67117 -31.04782 -29.68533 -27.71693 -25.25966 -24.27633 -23.86468 -23.15216 -22.08562 -21.53617 -20.88426 -18.95693 -18.43321 -18.40459 -17.90761 -17.34621 -16.89672 -16.69395 -16.46681 -16.15264 -15.97408 -15.60613 -15.38042 -15.08934 -14.60073 -14.44331 -14.25700 -13.96272 -13.85365 -13.65748 -13.57675 -13.38058 -13.32119 -12.83198 -12.80038 -12.55358 -12.41051 -12.28175 -12.24065 -12.22501 -11.93976 -11.80659 -11.66366 -11.44413 -11.39807 -11.30377 -11.07083 -10.55195 -9.85337 -9.65427 -8.19681 -6.31677 0.18438 0.33554 1.04107 1.39914 1.43841 1.48395 1.51817 2.41378 2.70558 3.03271 3.13212 3.25804 3.38540 3.52477 3.69914 3.84132 3.84736 3.91660 4.00655 4.02364 4.11251 4.16479 4.38100 4.45760 4.48747 4.55575 4.57947 4.71307 4.75496 4.78644 4.81696 4.92864 4.96961 5.02834 5.09537 5.12762 5.20827 5.28762 5.33599 5.44331 5.49831 5.51883 5.54077 5.75211 5.86322 5.97306 6.23984 6.57835 6.86420 7.37896 8.92392 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.020829 B = 0.002313 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.954694 B =12103.964769 C =13047.847571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.006 4.006 3 Si 0.969 3.031 4 H -0.264 1.264 5 H -0.285 1.285 6 H -0.265 1.265 7 C -0.543 4.543 8 H 0.066 0.934 9 C 0.020 3.980 10 C -0.096 4.096 11 C -0.099 4.099 12 C -0.104 4.104 13 C 0.463 3.537 14 O -0.533 6.533 15 O -0.346 6.346 16 C 0.101 3.899 17 H 0.081 0.919 18 C -0.119 4.119 19 C -0.129 4.129 20 C -0.136 4.136 21 C -0.109 4.109 22 C -0.119 4.119 23 C -0.069 4.069 24 C -0.076 4.076 25 C -0.137 4.137 26 C 0.098 3.902 27 H 0.117 0.883 28 F -0.218 7.218 29 H 0.263 0.737 30 H -0.013 1.013 31 H -0.014 1.014 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.051 0.949 35 H 0.050 0.950 36 H 0.130 0.870 37 H 0.129 0.871 38 H 0.096 0.904 39 H 0.130 0.870 40 H 0.152 0.848 41 H 0.161 0.839 42 H 0.114 0.886 43 H 0.108 0.892 44 H 0.074 0.926 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.101 -32.749 -5.076 33.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.203 4.203 3 Si 0.793 3.207 4 H -0.189 1.189 5 H -0.211 1.211 6 H -0.190 1.190 7 C -0.581 4.581 8 H 0.084 0.916 9 C -0.017 4.017 10 C -0.133 4.133 11 C -0.137 4.137 12 C -0.141 4.141 13 C 0.308 3.692 14 O -0.423 6.423 15 O -0.263 6.263 16 C 0.046 3.954 17 H 0.099 0.901 18 C -0.119 4.119 19 C -0.147 4.147 20 C -0.154 4.154 21 C -0.127 4.127 22 C -0.136 4.136 23 C -0.070 4.070 24 C -0.112 4.112 25 C -0.174 4.174 26 C 0.062 3.938 27 H 0.134 0.866 28 F -0.199 7.199 29 H 0.072 0.928 30 H 0.005 0.995 31 H 0.004 0.996 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.148 0.852 37 H 0.147 0.853 38 H 0.115 0.885 39 H 0.148 0.852 40 H 0.170 0.830 41 H 0.179 0.821 42 H 0.132 0.868 43 H 0.126 0.874 44 H 0.093 0.907 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 6.594 -32.669 -5.034 33.706 hybrid contribution -0.580 1.739 0.182 1.842 sum 6.014 -30.931 -4.852 31.881 Atomic orbital electron populations 1.70120 1.08040 1.27837 1.51807 1.26081 0.95781 1.03706 0.94766 0.85447 0.78186 0.77741 0.79347 1.18897 1.21061 1.18961 1.21723 0.93762 0.92216 1.50382 0.91579 1.19039 0.94626 0.93592 0.94485 1.21439 0.97918 0.92279 1.01684 1.21351 0.97341 0.93149 1.01816 1.21546 0.98995 0.85470 1.08054 1.24416 0.87353 0.86766 0.70672 1.90677 1.17013 1.88008 1.46571 1.86625 1.41335 1.14582 1.83739 1.22137 0.95712 0.82688 0.94869 0.90072 1.19569 1.04149 0.94622 0.93551 1.21287 0.99739 0.98857 0.94852 1.21308 1.00571 0.98291 0.95182 1.21521 0.97844 0.92113 1.01223 1.21542 0.99111 1.01163 0.91803 1.19937 0.98266 0.92664 0.96092 1.20593 1.04752 0.95714 0.90146 1.22194 1.01569 0.94407 0.99246 1.21862 1.02676 0.93728 0.75515 0.86560 1.92830 1.97898 1.94369 1.34797 0.92831 0.99495 0.99559 0.91837 0.91780 0.93027 0.93125 0.85245 0.85266 0.88550 0.85209 0.83023 0.82129 0.86793 0.87417 0.90714 0.86425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.10 13.29 21.45 0.28 -58.81 16 2 C -0.01 -0.36 5.46 84.66 0.46 0.10 16 3 Si 0.97 44.96 29.54 68.60 2.03 46.98 16 4 H -0.26 -11.65 7.11 99.48 0.71 -10.95 16 5 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 6 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 7 C -0.54 -31.52 9.11 25.60 0.23 -31.29 16 8 H 0.07 3.59 7.74 -2.91 -0.02 3.57 16 9 C 0.02 1.08 4.97 29.85 0.15 1.23 16 10 C -0.10 -3.90 5.15 30.59 0.16 -3.74 16 11 C -0.10 -3.54 4.50 30.59 0.14 -3.40 16 12 C -0.10 -2.78 5.81 29.85 0.17 -2.61 16 13 C 0.46 14.06 6.32 71.23 0.45 14.51 16 14 O -0.53 -19.68 13.89 21.94 0.30 -19.37 16 15 O -0.35 -9.36 9.61 -51.34 -0.49 -9.85 16 16 C 0.10 2.43 2.33 29.74 0.07 2.50 16 17 H 0.08 2.31 7.12 -2.39 -0.02 2.29 16 18 C -0.12 -2.65 5.58 -19.86 -0.11 -2.76 16 19 C -0.13 -3.34 9.07 22.36 0.20 -3.13 16 20 C -0.14 -2.83 10.05 22.20 0.22 -2.60 16 21 C -0.11 -1.63 10.05 22.20 0.22 -1.40 16 22 C -0.12 -1.47 9.61 22.36 0.21 -1.26 16 23 C -0.07 -1.05 5.74 -19.86 -0.11 -1.16 16 24 C -0.08 -0.56 5.67 29.74 0.17 -0.39 16 25 C -0.14 -1.42 5.72 30.61 0.18 -1.24 16 26 C 0.10 1.71 3.56 30.62 0.11 1.82 16 27 H 0.12 1.64 8.10 -2.39 -0.02 1.62 16 28 F -0.22 -4.96 17.10 44.97 0.77 -4.20 16 29 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 30 H -0.01 -0.80 8.14 -2.38 -0.02 -0.82 16 31 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 32 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 33 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 34 H 0.05 1.98 8.10 -2.39 -0.02 1.96 16 35 H 0.05 1.96 8.10 -2.38 -0.02 1.94 16 36 H 0.13 2.91 8.14 -2.39 -0.02 2.89 16 37 H 0.13 2.86 8.14 -2.38 -0.02 2.84 16 38 H 0.10 2.95 4.97 -2.91 -0.01 2.93 16 39 H 0.13 2.44 8.06 -2.91 -0.02 2.41 16 40 H 0.15 1.38 8.06 -2.91 -0.02 1.36 16 41 H 0.16 0.84 8.05 -2.91 -0.02 0.81 16 42 H 0.11 0.34 8.13 -2.39 -0.02 0.32 16 43 H 0.11 0.41 8.14 -2.39 -0.02 0.39 16 44 H 0.07 0.91 8.10 -2.39 -0.02 0.89 16 45 H 0.12 0.69 8.14 -2.38 -0.02 0.67 16 Total: -1.00 -76.29 371.41 6.79 -69.50 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: 0.97 Total: 10.59 kcal Atomic # 6 Polarization: -37.77 SS G_CDS: 2.92 Total: -34.84 kcal Atomic # 7 Polarization: -59.10 SS G_CDS: 0.28 Total: -58.81 kcal Atomic # 8 Polarization: -29.03 SS G_CDS: -0.19 Total: -29.22 kcal Atomic # 9 Polarization: -4.96 SS G_CDS: 0.77 Total: -4.20 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.98 kcal Total: -76.29 6.79 -69.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893720950.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.750 kcal (2) G-P(sol) polarization free energy of solvation -76.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds