Wall clock time and date at job start Tue Mar 31 2020 12:14:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 119.99786 * 2 1 4 4 H 1.48501 * 109.46756 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46933 * 299.99845 * 3 2 1 6 6 H 1.48498 * 109.47326 * 60.00285 * 3 2 1 7 7 C 1.37875 * 119.99944 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99736 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47188 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47131 * 179.97438 * 10 9 7 12 12 C 1.53006 * 109.47127 * 179.97438 * 11 10 9 13 13 C 1.50698 * 109.47184 * 180.02562 * 12 11 10 14 14 O 1.20825 * 119.99963 * 359.97438 * 13 12 11 15 15 O 1.34225 * 119.99990 * 179.97438 * 13 12 11 16 16 C 1.45205 * 116.99943 * 179.97438 * 15 13 12 17 17 H 1.09001 * 109.24723 * 330.53195 * 16 15 13 18 18 C 1.50631 * 109.25187 * 89.99927 * 16 15 13 19 19 C 1.38911 * 117.75359 * 318.00850 * 18 16 15 20 20 C 1.37928 * 120.54268 * 180.21639 * 19 18 16 21 21 C 1.38269 * 119.77457 * 0.06166 * 20 19 18 22 22 C 1.37935 * 119.77000 * 359.88170 * 21 20 19 23 23 C 1.37670 * 122.55987 * 138.06220 * 18 16 15 24 24 C 1.50630 * 122.56379 * 359.25886 * 23 18 16 25 25 C 1.52725 * 110.58938 * 17.80225 * 24 23 18 26 26 C 1.52735 * 109.25245 * 211.10322 * 16 15 13 27 27 H 1.09000 * 109.68426 * 68.89168 * 26 16 15 28 28 F 1.39900 * 109.68041 * 308.34024 * 26 16 15 29 29 H 0.97007 * 119.99867 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.47722 * 59.99169 * 9 7 2 31 31 H 1.09001 * 109.46665 * 299.99501 * 9 7 2 32 32 H 1.08996 * 109.47452 * 59.99830 * 10 9 7 33 33 H 1.09001 * 109.46997 * 299.99404 * 10 9 7 34 34 H 1.09001 * 109.47502 * 60.00153 * 11 10 9 35 35 H 1.09001 * 109.47289 * 299.99950 * 11 10 9 36 36 H 1.09001 * 109.47002 * 299.99574 * 12 11 10 37 37 H 1.08993 * 109.46955 * 60.00011 * 12 11 10 38 38 H 1.07998 * 119.72836 * 0.23813 * 19 18 16 39 39 H 1.08000 * 120.11704 * 180.08682 * 20 19 18 40 40 H 1.07999 * 120.11689 * 179.90897 * 21 20 19 41 41 H 1.07999 * 119.73242 * 179.97438 * 22 21 20 42 42 H 1.09006 * 109.24792 * 138.08619 * 24 23 18 43 43 H 1.08999 * 109.25063 * 257.51187 * 24 23 18 44 44 H 1.08997 * 109.68612 * 68.60886 * 25 24 23 45 45 H 1.08997 * 109.68668 * 189.12552 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6620 0.0005 11 6 1.4802 -4.9870 0.0012 12 6 2.4745 -6.1500 0.0005 13 6 1.7210 -7.4551 0.0005 14 8 0.5128 -7.4551 0.0015 15 8 2.3921 -8.6175 -0.0005 16 6 1.6013 -9.8353 0.0001 17 1 0.6548 -9.6488 0.5075 18 6 1.3291 -10.2515 -1.4217 19 6 0.9919 -9.2588 -2.3330 20 6 0.7266 -9.5761 -3.6489 21 6 0.7954 -10.8929 -4.0650 22 6 1.1312 -11.8799 -3.1618 23 6 1.4021 -11.5620 -1.8370 24 6 1.7761 -12.6872 -0.9080 25 6 1.6183 -12.2561 0.5486 26 6 2.3633 -10.9303 0.7439 27 1 2.4103 -10.6885 1.8057 28 9 3.6588 -11.0372 0.2267 29 1 -0.4850 0.8401 -0.0004 30 1 0.6246 -2.5571 -0.8896 31 1 0.6241 -2.5566 0.8904 32 1 2.8719 -3.6043 0.8905 33 1 2.8718 -3.6043 -0.8895 34 1 0.8533 -5.0451 -0.8886 35 1 0.8539 -5.0445 0.8914 36 1 3.1005 -6.0923 -0.8900 37 1 3.1018 -6.0922 0.8900 38 1 0.9374 -8.2301 -2.0087 39 1 0.4665 -8.7986 -4.3519 40 1 0.5873 -11.1477 -5.0936 41 1 1.1843 -12.9083 -3.4874 42 1 1.1294 -13.5431 -1.1016 43 1 2.8125 -12.9726 -1.0882 44 1 0.5616 -12.1208 0.7791 45 1 2.0426 -13.0162 1.2045 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893720954.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:29 Heat of formation + Delta-G solvation = -139.873680 kcal Electronic energy + Delta-G solvation = -26459.712630 eV Core-core repulsion = 22548.237086 eV Total energy + Delta-G solvation = -3911.475544 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -47.94923 -41.06921 -39.59716 -36.92448 -35.59800 -35.00695 -32.75381 -32.20108 -30.47858 -30.00822 -28.93590 -26.00184 -24.31517 -23.14988 -22.87050 -22.20066 -20.61249 -20.05134 -19.87380 -17.81036 -17.56843 -16.93285 -16.47272 -16.19293 -15.90022 -15.79221 -15.57609 -14.88292 -14.58625 -14.53969 -14.43434 -14.22298 -13.55207 -13.25997 -12.90745 -12.82131 -12.68822 -12.62822 -12.32085 -12.05880 -11.90524 -11.79105 -11.68101 -11.58021 -11.22068 -11.03683 -10.98679 -10.63689 -10.60572 -10.49497 -10.48237 -10.35124 -9.66862 -9.30477 -9.04774 -9.01746 -8.88949 -8.32835 -5.97493 -3.99960 0.99404 1.12866 2.17226 2.48804 3.32377 3.39729 3.43818 3.49734 3.89892 3.95329 4.12182 4.35140 4.43463 4.48045 4.50063 4.64475 4.72235 4.89747 4.93908 4.95566 5.13491 5.18092 5.23940 5.27090 5.35391 5.38208 5.38309 5.45918 5.63399 5.69203 5.72227 5.81778 6.02961 6.15923 6.20008 6.25258 6.27447 6.32557 6.44700 6.72015 6.74468 6.92393 7.14648 7.70206 7.71581 7.85562 8.03290 8.45169 9.07833 9.64050 11.13873 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.023071 B = 0.002277 C = 0.002155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.359213 B =12296.283135 C =12991.574065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.520 4.520 8 H 0.055 0.945 9 C 0.020 3.980 10 C -0.110 4.110 11 C -0.108 4.108 12 C -0.113 4.113 13 C 0.457 3.543 14 O -0.500 6.500 15 O -0.342 6.342 16 C 0.103 3.897 17 H 0.111 0.889 18 C -0.100 4.100 19 C -0.099 4.099 20 C -0.121 4.121 21 C -0.111 4.111 22 C -0.125 4.125 23 C -0.064 4.064 24 C -0.083 4.083 25 C -0.144 4.144 26 C 0.103 3.897 27 H 0.098 0.902 28 F -0.196 7.196 29 H 0.259 0.741 30 H 0.016 0.984 31 H 0.016 0.984 32 H 0.050 0.950 33 H 0.050 0.950 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.105 0.895 37 H 0.105 0.895 38 H 0.123 0.877 39 H 0.126 0.874 40 H 0.124 0.876 41 H 0.123 0.877 42 H 0.083 0.917 43 H 0.087 0.913 44 H 0.089 0.911 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.461 -29.872 -2.191 30.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.558 4.558 8 H 0.074 0.926 9 C -0.017 4.017 10 C -0.148 4.148 11 C -0.146 4.146 12 C -0.150 4.150 13 C 0.301 3.699 14 O -0.387 6.387 15 O -0.259 6.259 16 C 0.048 3.952 17 H 0.129 0.871 18 C -0.101 4.101 19 C -0.117 4.117 20 C -0.139 4.139 21 C -0.129 4.129 22 C -0.143 4.143 23 C -0.064 4.064 24 C -0.120 4.120 25 C -0.182 4.182 26 C 0.066 3.934 27 H 0.116 0.884 28 F -0.176 7.176 29 H 0.069 0.931 30 H 0.034 0.966 31 H 0.035 0.965 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.123 0.877 37 H 0.123 0.877 38 H 0.141 0.859 39 H 0.144 0.856 40 H 0.142 0.858 41 H 0.141 0.859 42 H 0.102 0.898 43 H 0.105 0.895 44 H 0.107 0.893 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 2.973 -29.787 -2.202 30.016 hybrid contribution 0.286 1.023 -0.134 1.070 sum 3.259 -28.764 -2.337 29.042 Atomic orbital electron populations 1.69986 1.06060 1.26438 1.51014 1.25044 0.94847 0.99282 0.95424 0.86549 0.80107 0.83862 0.77557 1.19742 1.21044 1.21036 1.21309 0.93060 0.91118 1.50319 0.92632 1.19098 0.94019 0.91247 0.97351 1.21650 0.99156 0.93491 1.00473 1.21588 0.97040 0.92676 1.03248 1.21657 1.00011 0.87596 1.05747 1.24366 0.87823 0.86132 0.71564 1.90684 1.15492 1.87531 1.45003 1.86729 1.41004 1.14130 1.84079 1.21991 0.96195 0.82776 0.94253 0.87134 1.19559 1.02371 0.93437 0.94706 1.21305 0.97434 0.99495 0.93461 1.21127 1.00218 0.96770 0.95826 1.21142 0.99116 0.93022 0.99578 1.21083 1.01031 0.99547 0.92597 1.19491 0.98964 0.93153 0.94798 1.20459 1.02992 0.96221 0.92342 1.22186 1.01984 0.95995 0.98042 1.21605 0.78976 0.94678 0.98123 0.88417 1.92849 1.38942 1.97000 1.88850 0.93083 0.96558 0.96543 0.93162 0.93169 0.91547 0.91471 0.87732 0.87668 0.85895 0.85603 0.85777 0.85858 0.89814 0.89505 0.89285 0.89074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.34 13.29 55.43 0.74 -26.60 16 2 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 4 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 5 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.52 -14.84 9.11 -34.44 -0.31 -15.16 16 8 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 9 C 0.02 0.52 4.97 -27.89 -0.14 0.38 16 10 C -0.11 -2.21 5.15 -26.73 -0.14 -2.35 16 11 C -0.11 -1.84 4.50 -26.73 -0.12 -1.96 16 12 C -0.11 -1.51 5.81 -27.88 -0.16 -1.67 16 13 C 0.46 6.48 6.32 36.00 0.23 6.70 16 14 O -0.50 -8.23 13.88 -18.75 -0.26 -8.49 16 15 O -0.34 -4.50 9.43 -39.24 -0.37 -4.87 16 16 C 0.10 1.17 2.39 -28.05 -0.07 1.10 16 17 H 0.11 1.24 7.12 -51.93 -0.37 0.87 16 18 C -0.10 -1.19 5.51 -104.61 -0.58 -1.77 16 19 C -0.10 -1.28 9.07 -39.45 -0.36 -1.64 16 20 C -0.12 -1.34 10.05 -39.68 -0.40 -1.74 16 21 C -0.11 -1.04 10.05 -39.68 -0.40 -1.43 16 22 C -0.12 -1.12 9.61 -39.44 -0.38 -1.50 16 23 C -0.06 -0.63 5.71 -104.61 -0.60 -1.23 16 24 C -0.08 -0.58 5.32 -28.06 -0.15 -0.73 16 25 C -0.14 -0.89 5.84 -26.70 -0.16 -1.04 16 26 C 0.10 0.90 3.91 -26.70 -0.10 0.80 16 27 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 28 F -0.20 -2.23 16.02 2.25 0.04 -2.19 16 29 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 30 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 33 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.07 1.18 8.10 -51.93 -0.42 0.76 16 35 H 0.07 1.20 8.10 -51.93 -0.42 0.78 16 36 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.11 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.12 1.75 4.97 -52.49 -0.26 1.49 16 39 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 40 H 0.12 0.86 8.06 -52.49 -0.42 0.43 16 41 H 0.12 0.79 8.05 -52.49 -0.42 0.36 16 42 H 0.08 0.42 8.13 -51.93 -0.42 0.00 16 43 H 0.09 0.61 7.84 -51.93 -0.41 0.21 16 44 H 0.09 0.47 8.10 -51.93 -0.42 0.05 16 45 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 369.98 15.07 5.58 5.58 Total: -1.00 -33.48 369.98 -10.14 -43.62 By element: Atomic # 1 Polarization: 4.80 SS G_CDS: -6.91 Total: -2.11 kcal Atomic # 6 Polarization: -17.81 SS G_CDS: -3.93 Total: -21.73 kcal Atomic # 7 Polarization: -27.34 SS G_CDS: 0.74 Total: -26.60 kcal Atomic # 8 Polarization: -12.73 SS G_CDS: -0.63 Total: -13.36 kcal Atomic # 9 Polarization: -2.23 SS G_CDS: 0.04 Total: -2.19 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.48 -10.14 -43.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893720954.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.252 kcal (2) G-P(sol) polarization free energy of solvation -33.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds